These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10258#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 702 fasta sequence [AGATATAACGGAGAAAGAGGTACTCTCAGCTTTTGAGAGGTATGGTTATGTTGAACAAATTGATATTAAGCGTTCTCTGAAACCTGGTGCTCATTCTTATGCATTTGTGCGCTTTCAGAATGTTGATATGGCCAGTCGTGCGAAAATGTCCATGTCTGGTCGTTTTATTAGATCCCTACATTGCAAAATAGGTTATGGTAAGGCAATCCCATCGCACTGTCTGTATATTGGTGGATTAGAATCGTGGACTTCCGTTGATTCACTACAGCGTATGCTCTCTCGTTTCGGACAACTAACTTATCTTGATTGGTCTCCTAGACGTAAATATGCAATCGCCGTTTATGACAGCTGCGAATCAGCACTCGAAGCTAATAGACAATTAAAAAGTCTCTCAGCAACCAGTCGTCCGAATTTAAGACTTCGTGTAGATTTTATAAACCCGGAATTAGTCCAACCAAAGTCACAGATTTTAAACAAGACGGACTCTAACACAGAAGGTGACGGTCAGGACAATCAAATGTCAGAATCACGAAATGCTATAATTAGGTCTGATAATGGGATTCCTGTAACCGCAAATAACTGTCGTATTCGAACAAATGATCATTTTGATGGGGGACCGTACACGACGAACCAGTATTACATAGAAGATCCCGCCGGTGATAAAAATCTCACTACTGTACGACACTTACCTA-TTGCACATNC] [+] EMBL CD194879 [AGATATAACGGAGAAAGAGGTACTCTCAGCTTTTGAGAGGTATGGTTATGTTGAACAAATTGATATTAAGCGTTCTCTGAAACCTGGTGCTCATTCTTATGCATTTGTGCGCTTTCAGAATGTTGATATGGCCAGTCGTGCGAAAATGTCCATGTCTGGTCGTTTTATTAGATCCCTACATTGCAAAATAGGTTATGGTAAGGCAATCCCATCGCACTGTCTGTATATTGGTGGATTAGAATCGTGGACTTCCGTTGATTCACTACAGCGTATGCTCTCTCGTTTCGGACAACTAACTTATCTTGATTGGTCTCCTAGACGTAAATATGCAATCGCCGTTTATGACAGCTGCGAATCAGCACTCGAAGCTAATAGACAGTTAAAAAGTCTCTCAGCAACCAGTCGTCCGAATTTAAGACTTCGTGTAGATTTTATAAACCCGGAATTAGTCCAACCAAAGTCACAGATTTTAAACAAGACGGACTCTAACACAGAAGGTGACGGTCAGGACAATCAAATGTCAGAATCACGAAATGCTANTATTANGTCTGATAATGGGATTCCTGNTACCGC AATAACTGTCGTATTCGAAC AATGATCATTTTGATGGNGGACCGTACACGACGAACCAGTATTACATANAAGATCCCGCCCGTG ] [+] EMBL CD127352 [ CCATCGCACTGTCTGTATATTGGTGGATTAGAATCGTGGACTTCCGTTGATTCACTACAGCGTATGCTCTCTCGTTTCGGACAACTAACTTATCTTGATTGGTCTCCTAGACGTAAATATGCAATCGCCGTTTATGACAGCTGCGAATCAGCACTCGAAGCTAATAGACAATTAAAAAGTCTCTCAGCAACCAGTCGTCCGAATTTAAGACTTCGTGTAGATTTTATAAACCCGGAATTAGTCCAACCAAAGTCACAGATTTTAAACAAGACGGACTCTAACACAGAAGGTGACGGTCAGGACAATCAAATGTCAGAATCACGAAATGCTATAATTAGGTCTGATAATGGGATTCCTGTAACCGCAAATAACTGTCGTATTCGAACAAATGATCATTTTGATGGGGGACCGTACACGACGAACCAGTATTACATAGAAGATCCCGCCGGTGATAAAAATCTCACTACTGTACGACACTTAC ] [+] EMBL CD127462 [ CCATCGCACTGTCTGTATATTGGTGGATTAGAATCGTGGACTTCCGTTGATTCACTACAGCGTATGCTCTCTCGTTTCGGACAACTAACTTATCTTGATTGGTCTCCTAGACGTAAATATGCAATCGCCGTTTATGACAGCTGCGAATCAGCACTCGAAGCTAATAGACAATTAAAAAGTCTCTCAGCAACCAGTCGTCCGAATTTAAGACTTCGTGTAGATTTTATAAACCCGGAATTAGTCCAACCAAAGTCACAGATTTTAAACAAGACGGACTCTAACACAGAAGGTGACGGTCAGGACAATCAAATGTCAGAATCACGAAATGCTATAATTAGGTCTGATAATGGGATTCCTGTAACCGCAAATAACTGTCGTATTCGAACAAATGATCATTTTGATGGGGGACCGTACACGACGAACCAGTATTACATAGAAGATCCCGCCGGTGATAAAAATCTCACT ] [-] EMBL CD127563 [ CATCGCACTGTCTGTATATTGGTGGATTAGAATCGTGGACTTCCGTTGATTCACTACAGCGTATGCTCTCTCGTTTCGGACAACTAACTTATCTTGATTGGTCTCCTAGACGTAAATATGCAATCGCCGTTTATGACAGCTGCGAATCAGCACTCGAAGCTAATAGACAATTAAAAAGTCTCTCAGCAACCAGTCGTCCGAATTTAAGACTTCGTGCAGATTTTATAAACCCGAAATTAGTCCAACCAAAGTCACAGATTTTAAACAAGACGGACTCTAACACAGAAGGTGACGGTCAGGACAATCAAATGTCAGAATCACGAAATGCTATAATTAGGTCTGATAATGGGATTCCTGTAACCGCAAATAACTGTCGTATTCGAACAAATGATCATTTTGATGGGGGACCGTACACGACGAACCAGTATTACATAGAAGATCCCGCCGGTGATAAAAATCTCAAAACTGTACGACACCTA CTATTTGCACATNC] [-] EMBL CD128006 [ CATCGCACTGTCTGTATATTGGTGGATTAGAATCGTGGACTTCCGTTGATTCACTACAGCGTATGCTCTCTCGTTTCGGACAACTAACTTATCTTGATTGGTCTCCTAGACGTAAATATGCAATCGCCGTTTATGACAGCTGCGAATCAGCACTCGAAGCTAATAGACAATTAAAAAGTCTCTCAGCAACCAGTCGTCCGAATTTAAGACTTCGTGTAGATTATATAAACCCGGAATTAGTCCAACCAAAGTCACAGATTTTAAACAAGACGGACTCTAACACAGAAGGTGACGGTCAGGACAATCAAATGTCAGAATCACGAAATGCTATAATTAGGTCTGATAATGGGATTCCTGTAACCGCAAATAACTGTCGTATTCGAACAAATGATCACTTTGATGGGGGACCGTACACGACGAACCAGTATTACATAGAAGATCCCGCCGGTGATAAAAATCTCAATACTGTACGACACCTACCTA TTGGAC ] [-] EMBL CD128095 [ CATCGCACTGTCTGTATATTGGTGGATTAGAATCGTGGACTTCCGTTGATTCACTACAGCGTATGCTCTCTCGTTTCGGACAACTAACTTATCTTGATTGGTCTCCTAGACGTAAATATGCAATCGCCGTTTATGACAGCTGCGAATCAGCACTCGAAGCTAATAGACAATTAAAAAGTCTCTCAGCAACCAGTCGTCCGAATTTAAGACTTCGTGTAGATTTTATAAACCCGGAATTAGTCCAACCAAAGTCACAGATTTTAAACAAGACGGACTCTAACACAGAAGGTGACGGTCAGGACAATCAAATGTCAGAATCACGAAATGCTATAATTAGGTCTGATAATGGGATTCCTGTAACCGCAAATAACTGTCGTATTCGAACAAATGATCATTTTGATGGGGGACCGTACACGACGAACCAGTATTACATAGAAGATCCCGCCGGTGAGATTGATCTCAaaa ] [-] EMBL CD128148 [ CATCGCACTGTCTGTATATTGGTGGATTAGAATCGTGGACTTCCGTTGATTCACTACAGCGTATGCTCTCTCGTTTCGGACAACTAACTTATCTTGATTGGTCTCCTAGACGTAAATATGCAATCGCCGTTTATGACAGCTGCGAATCAGCACTCGAAGCTAATAGACAATTAAAAAGTCTCTCAGCAACCAGTCGTCCGAATTTAAGACTTCGTGTAGATTTTATAAACCCGGAATTAGTCCAACCAAAGTCACAGATTTTAAACAAGACGGACTCTAACACAGAAGGTGACGGTCAGGACAATCAAATGTCAGAATCACGAAATGCTATAATTAGGTCTGATAATGGGATTCCTGTAACCGCAAATAACTGTCGTATTCGAACAAATGATCATTTTGATGGGGGACCGTACACGACGAACCAGTATTACATAGAAGATCCCGCCGGTGATAAAAATCTCACTA ] [-] EMBL CD117712 [ TAAATATGCAATCGCCGTTTATGACAGCTGCGAATCAGCACTCGAAGCTAATAGACAATTAAAAAGTCTCTCAGCAACCAGTCGTCCGAATTTAAGACTTCGTGTAGATTTTATAAACCCGGAATTAGTCCAACCAAAGTCACAGATTTTAAACAAGACGGACTCTAACACAGAAGGTGACGGTCAGGACAATCAAATGTCAGAATCACGAAATGCTATAATTAGGTCTGATAATGGGATTCCTGTAACCGCAAATAACTGTCGTATTCGAACAAATGATCATTTTGATGGGGGACCGTACACGACGAACCAGTATTACATAGAAGATCCCGCCGGTGATAAAAATCTCACTACTGT ] [-] EMBL CD117625 [ TAAATATGCAATCGCCGTTTATGACAGCTGCGAATCAGCACTCGAAGCTAATAGACAATTAAAAAGTCTCTCAGCAACCAGTCGTCCGAATTTAAGACTTCGTGTAGATTTTATAAACCCGGAATTAGTCCAACCAAAGTCACAGATTTTAAACAAGACGGACTCTAACACAGAAGGTGACGGTCAGGACAATCAAATGTCAGAATCACGAAATGCTATAATTAGGTCTGATAATGGGATTCCTGTAACCGCAAATAACTGTCGTATTCGAACAAATGATCATTTTGATGGGGGACCGTACACGACGAACCAGTATTACATAGAAGATCCCGCCGGTGATAAAAATCTCACTACTGT ] [+] EMBL CD127714 [ ATCGCCGTTTATGACAGCTGCGAATCATCACTCGAAGCTAATAGACAATTAAAAAGTCTCTCAGCAACCAGTCGTCCGAATTTAAGACTTCGTGTAGATTTTATAAACCCGGAATTAGTCCAACCAAAGTCACAGATTTTAAACAAGACGGACTCTAACACAGAAGGTGACGGTCAGGACAATCAAATGTCAGAATCACGAAATGCTATAATTAGGTCTGATAATGGGATTCCTGTAACCGCAAATAACTGTCGTATTCGAACAAATGATCATTTTGATGGGGGACCGTACACCACGAACCAGTATTACATAGAAGATCCCGCCGGTGATAAAAATCTCACTACTGTACGACACTTACCTA ] consensusID : consensus_10258#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 683 fasta sequence [GTAACCGCAAATAACTGTCGTATTCGAACAAATGATCATTTTGATGGGGGACCGTACACGACGAACCAGTATTACATAGAAGATCCCGCCGGTGATAAAAATCTCACTACTGTACGACACTTACCTTATGTAAAACCACCTTTTCATATATCTAATCGATATCACACATATAATCGGAACACATCTCGCTACTCGGACAACCACGGTATACTCAGTCCAGTAGAAGATATTCCATGTAACCTGAAATCGATTGTCACCCTTCAAGAACTGGACCAGTATCTACAACCGGATTTGTGGAAAGGAAAGTTCTTATTGAAAAATAACCATTTTTATTTTCGCTGTTTGATGTTAATCGGTAATAAAGATATTAGTCAAGATTTACTGGATTATAAAGACAATAACAGTAATTCCGAACAACTAACTAGTCCAACTTTACGTATTTCACGCCGGGGCACTCTTGACGCTTCATGGATGGCCGAAGCTACGCATCGTATTCATAATGTACTATCTACAGCACGTCATAACTTATGCCTCATGCTAATATTACCCGATACGGAGCAAACTAATAAGTATCTGCACAAGGAATCTAAACTGAATAATCAGTCGAACACTGAAATTACGAATGTAAAATCAACAATAAATGATTGTTTTTCACTACACGCTTTAATTGCTTATTTAAAATT] [+] EMBL CD089953 [GTAACCGCAAATAACTGTCGTATTCGAACAAATGATCATTTTGATGGGGGACCGTACACGACGAACCAGTATTACATAGAAGATCCCGCCGGTGATAAAAATCTCACTACTGTACGACACTTACCTTATGTAAAACCACCTTTTCATATATCTAATCGATATCACACATATAATCGGAACACATCTCGCTACTCGGACAACCACGGTATACTCAGTCCAGTAGAAGATATTCCATGTAACCTGAAATCGATTGTCACCCTTCAAGAACTGGACCAGTATCTACAACCGGATTTGTGGAAAGGAAAGTTCTTATCGAAAAATAACCATTTTTATTTTCGCTGTTTGATGTTAATCGGTAATAAAGATATTAGTCAAGATTTACTGGATTATAAAGACAATAACAGTAATTCCGAACAACTAACTAG ] [+] EMBL CD136531 [ TTACATAGAAGATCCCGCCGGTGATAAAAATCTCACTACTGTACGACACTTACCTTATGTAAAACCACCTTTTCATATATCTAATCGATATCACACATATAATCGGAACACATCTCGCTACTCGGACAACCACGGTATACTCAGTCCAGTAGAAGATATTCCGTGTAACCTGAAATCGATCGTCACCCTTCAAGAACTGGACCAGTATCTACAACCGGATTTGTGGAAAGGAAAGTTCTTATTGAAAAATAACCATTTTTATTTTCGCTGTTTGATGTTAATCGGNAATAAAGATATTAGTCAA ] [+] EMBL CD146865 [ TCGGAACACATCTCGCTACTCGGACAACCACGGTATACTCAGTCCAGTAGAAGATATTCCATGTAACCTGAAATCGATTGTCACCCTTCAAGAACTGGACCAGTATCTACAACCGGATTTGTGGAAAGGAAAGTTCTTATTGAAAAATAACCATTTTTATTTTCGCTGTTTGATGTTAATCGGTAATAAAGATATTAGTCAAGATTTACTGGATTATAAAGACAATAACAGTAATTCCGAACAACTAACTAGTCCAACTTTACGTATTTCACGCCGGGGCACTCTTGACGCTTCATGGATGGCCGAAGCTACGCATCGTATTCATAATGTACTATCTACAGCACGTCATAACTTATGCCTCATGCTAATATTACCCGATACGGAGCAAACTAATAAGTATCTGCACAAGGAATCTAAACTGAATAATCAGTCGAACACTGAAATTACGAATGTAAAATCAACAATAAATGATTGTTTTTCACTACACGCTTTAATTGCTTATTTAAAATT] [+] EMBL CD190615 [ GGAACACATCTCGCTACTCGGACAACCACGGTATACTCAGTCCAGTAGAAGATATTCCATGTAACCTGAAATCGATTGTCACCCTTCAAGAACTGGACCAGTATCTACAACCGGATTTGTGGAAAGGAAAGTTCTTATTGAAAAATAACCATTTTTATTTTCGCTGTTTGATGTTAATCGGTAATAAAGATATTAGTCAAGATTTACTGGATTATAAAGACAATAACAGTAATTCCGAACAACTAACTAGTCCAACTTTACGTATTTCACGCCGGGGCACTCTTGATGCTTCATGGATGGCCGAAGCTACGCATCGTATTCATAATGTACTATCTACAGCACGTCATAACTTATGCCTCATGCTAATATTACCCGATACGGAGCAAACTAATAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10258#0 AGATATAACGGAGAAAGAGGTACTCTCAGCTTTTGAGAGGTATGGTTATGTT-GAACAAA 59 consensus_10258#1 ----------------------------GTAACCGCAAATAACTGTCGTATTCGAACAAA 32 * * * * ** * ** ******* consensus_10258#0 T--TGATATTAAGCGTTCTCTGAAACCTGGTGCTCATTCTTATGCATTTGTGCGCTTTCA 117 consensus_10258#1 TGATCATTTTGATGGGGGACCGTACACGACGAACCAGTATTACATAGAAGATCCCGCCGG 92 * * ** ** * * * * * * ** * *** * * * * consensus_10258#0 GAATGTTGATATGGCCAGTCGTGCGAAAATGTCC--ATGTCTGGTCGTTTTATTAGATCC 175 consensus_10258#1 TGATAAAAATCTCACTACT-GTACGACACTTACCTTATGTAAAACCACCTTTTCATATAT 151 ** ** * * * * ** *** * * ** **** * ** * * ** consensus_10258#0 CTA--CATTGCAAAATAGGTTATGGTAAGGCAATCCCATCGCACTGTCTGTATATTGGTG 233 consensus_10258#1 CTAATCGATATCACACATATAATCGGAACACA-TCTCGCTACTCGGACAAC-CACGGTAT 209 *** * * * * * * ** * ** ** ** * * * * * * * consensus_10258#0 GATTAGAATCGTGGACTTCCGTTGATTCACTACAGCGTATGCTCTCTCGTTTCGGACAAC 293 consensus_10258#1 ACTCAGTCCAGTAGAAGATATTCCATGTAACCTGAAATCGATTGTCACCCTTCAAGAACT 269 * ** ** ** * ** * * * ** * *** * consensus_10258#0 TAACT--TATCT-TGATTGGTCTCCTAGACGTAAATATGCAATCGCCGTTTATGACAGCT 350 consensus_10258#1 GGACCAGTATCTACAACCGGATTTGTGGAAAGGAAAGTTCT-TATTGAAAAATAACCATT 328 ** ***** * ** * * ** ** * * * ** ** * consensus_10258#0 GCGAAT--CAGCACTCGAAGCTAATAGACAATTAAAAAGTCTCTCAGCAACCAGTCGTCC 408 consensus_10258#1 TTTATTTTCGCTGTTTGATGTTAATCGGTAATAAAGA----TATTAGTCAAGATTTACTG 384 * * * * ** * **** * *** ** * * * ** * * * consensus_10258#0 GAATTTAAGACTTCGTGTAGATTTTATAAACCCGGAATTAGTCCAACCAAAGTCACAGAT 468 consensus_10258#1 GATTATAAAGACAATAACAGTAATTCCGAACAACTAACTAGTCCAACT----TTACGTAT 440 ** * *** ** ** *** ** ********* * ** ** consensus_10258#0 TTTAAACAAGACGGACTCTAACACAGAAGGTGACGGTCAGGACAATCAAATGTCAGAATC 528 consensus_10258#1 TTCACGCCGGGGCACTCTTGACGCTTCATG-GATGGCCGAAGC---TACGCATCGTATTC 496 ** * * * * ** * * * ** ** * * * ** * ** consensus_10258#0 ACGAAATGCTATAATTAGGTC-TGATAATGGGATTCCTGTAACCGCAAATAACTGTCGTA 587 consensus_10258#1 ATAATGTACTATCTACAGCACGTCATAACTT-ATGCCTCATGCTAATATTACCCGATACG 555 * * * **** ** * * **** ** *** * * ** * * consensus_10258#0 TT-CGAACAAATGATCATTTTGATGGGGGACCGTACACGACGAACCAGTATTACATAGAA 646 consensus_10258#1 GAGCAAACTAATAAGTATCTGCACAAGGAATCTAAACTGAATAATCAGTCGAACACTGAA 615 * *** *** * ** * * ** * * * ** ** **** *** *** consensus_10258#0 GATCCCGCCG-GTGATAAAAATCTCACTACTGT-----ACGACACTTACCTATTGCACAT 700 consensus_10258#1 ATTACGAATGTAAAATCAACAATAAATGATTGTTTTTCACTACACGCTTTAATTGCTTAT 675 * * * ** ** * * * *** ** **** ***** ** consensus_10258#0 NC------ 702 consensus_10258#1 TTAAAATT 683 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||