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Schistosoma mansoni
cluster # 10312 cluster # 10312       Sequences # 15       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10312#0 length = 648 sequences # 3  
consensus_10312#1 length = 502 sequences # 12  

consensusID : consensus_10312#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 648
fasta sequence
                              [TGTATTAGTTTTTACAAGGAAACAAATTGATTATACTATTTTCGGCGAAAGATACATATAAAACAAAGAAAAACCAACGGAACATGGAGAGAGAGAGAAAGGGAGAGAAAAGGACAAGAGGACAAATGTTAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAAATCA-AAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATATTAGTAGAAAATAAG-AAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGACAATAAAACATATTTAGTCAGTAATGTTGGTGGCGGTATTGATGATGATGACGATTTAATTTTTGAAGATTTCGCTCGTCTACGTTTAAAATCATATGAATCTGATAAACGTATGGATATAGCCGATTCATCTACAGCTGATCCAACAGTGACAATG]

[+] EMBL CD147092             [TGTATTAGTTTTTACAAGGAAACAAATTGATTATACTATTTTCGGCGAAAGATACATATAAAACAAAGAAAAACCAACGGAACATGGAGAGAGAGAGAAAGGGAGAGAAAAGGACAAGAGGACAAATGTTAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAAATCA AAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATATTAGTAGAAAATAAG AAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGACAATAAAACATATTTAGTCAGTAATGTTGGTGGCGGTATTGAT                                                                                                                  ]
[+] EMBL CD141564             [                                                                                                     GGAGAGAAAAGGACAAGAGGACAAATGTTAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAAATCA AAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAA                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CD147179             [                                                                                                                                                                                                                                               AATCAGCAATTATTTAATTACAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATATTAGTAGAAAATAAGCCAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGGCAATAAACCATATTTAGTCAGTAATGTTGGTGGCGGTATTGATGATGATGACGATTTAATTTTTGAAGATTTCGCTCGTCTACGTTTAAAATCATATGAATCTGATAAACGTATGGATATAGCCGATTCATCTACAGCTGATCCAACAGTGACAATG]


>consensus_10312#0 TGTATTAGTTTTTACAAGGAAACAAATTGATTATACTATTTTCGGCGAAAGATACATATA AAACAAAGAAAAACCAACGGAACATGGAGAGAGAGAGAAAGGGAGAGAAAAGGACAAGAG GACAAATGTTAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTG ACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAA ATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTG AATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTC ATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATA TTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGA TGGAGAAATGACAATAAAACATATTTAGTCAGTAATGTTGGTGGCGGTATTGATGATGAT GACGATTTAATTTTTGAAGATTTCGCTCGTCTACGTTTAAAATCATATGAATCTGATAAA CGTATGGATATAGCCGATTCATCTACAGCTGATCCAACAGTGACAATG



consensusID : consensus_10312#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 502
fasta sequence
                              [GGACAAGAGGACAAATGTTAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAAATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATATTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGACAGCGTTAGGTGTATCGAGATTCATTGTCACTGTTGGATCAGCTGTAGATGAATCGGCTATATCCATACGTTTATCAGATTCATATGATTTTAAACGTAGACGAGCGAAATCTTCAAAAATT]

[+] EMBL CD122378             [GGACAAGAGGACAAATGTTAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAAATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATATTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGACAGCGTT                                                                                                                   ]
[+] EMBL CD122392             [GGACAAGAGGACAAATGTTAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAAATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATATTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGACAGCGTTAGGTGTATCGAGATTCATTGTCACTGTTGGATCAGCTGTAGATGAATCGGCTATATCCATACGTTTATCAGATTCATATGATTTTAAACGTAGACGAGCGAAATCTTCAAAAAT ]
[+] EMBL CD122340             [GGACAAGAGGACAAATGTTAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAAATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATATTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGACAGCGTTAGGTGTATCGAGATTCATTGTCACTGTTGGATCAGCTGTAGATGAATCGGCTATATCCATACGTTTATCAGATTCATATGATTTTAAACGTAGACGAGCGAAATCTTCAAAAAT ]
[+] EMBL CD122412             [GGACAAGAGGACAAATGTTAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTCTAATAAATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATATTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGACAGCGTTAGGTGTATCGAGATACATTGTCACTGTTGGATCAGCTGTAGATGAATCGGCTATATCCATACGTNTATCAGATTCATATGATTTTAAACGTAGACGAGCGAAATCTTCAAAAAT ]
[+] EMBL CD122376             [GGACAAGAGGACAAATGTTAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAAATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTGAGTATTCAAGAAAGAATATTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGACAGCGTTAGGTGTATCGAGATTCATTGTCACTGTTGGATCAGCTGTAGATGAATCGGCTATATCCATACGTTTATCAGATTCATATGATTTTAAACGTAGACGAGCGAAATCTTCAAAAAT ]
[+] EMBL CD122268             [GGACAAGAGGACAAATGTTAAACAGTCAAAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAAATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATATTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGACAGCGTTAGGTGTATCGAGATTCATTGTCACTGTTGGATCAGCTGTAGATGACTCGGCTATATCCATACGTNTATCAGATTCATATGATTTTAAACGTAGACGAGCGAAATCTTCAAAAAT ]
[-] EMBL CD122401             [ GACAAGAGGACAAATGTTAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAAATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATATTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGACAGCGTTAGGTGTATCGAGATTCATTGTCACTGTTGGATCAGCTGTAGATGAATCGGCTATATCCATACGTTTATCAGATTCATATGATTTTAAACGTAGACGAGCGAAATCTTCAAAAATT]
[-] EMBL CD122348             [ GACAAGAGGACAAATGTTAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAAATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCAT AAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATATTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGACAGCGTTAGGTGTATCGAGATTCATTGTCACTGTTGGATCAGCTGTAGATGAATCGGCTATATCCATACGTTTATCAGATTCATATGATTTTAAACGTAGACGAGCGAAATCTTCAAAAATT]
[-] EMBL CD122414             [ GACAAGAGGACAAATGTTANATAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGGCTGACTTTAATAAATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATATTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGACAGCGTTAGGTGTATCGAGATTCATTGTCACTGTTGGATCAGCTGTAGATGAATCGGCTATATCCATACGTTTATCAGATTCATATGATTTTAAACGTAGACGAGCGAAATCTTCAAAAATT]
[+] EMBL CD197226             [                  TAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAAATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTNAGTATTCCAGAAAGAATATTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTAT                                                                                                                                                ]
[-] EMBL CD122405             [                      CAGTCAGAATNATCTATGTTTA TTTTCCAGTTTTAAAGTTAAGCTGACCCAACAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAAATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATATTAGTAGAAAATAAGAAACTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGACAGCGTTAGGTGTATCGAGATTCATTGTCACTGTTGGATCAGCTGTAGATGAATCGGCTATATCCATACGTTTATCAGATTCATATGATTTTAAACGTAGACGAGCGAAATCTTCAAAAATT]
[-] EMBL CD122294             [                                                                                            ACCTGAACAATAATTAAGAAATGACTGACTTTAATAAATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATATTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGACAGCGTTAGGTGTATCGAGATTCATTGTCACTGTTGGATCAGCTGTAGATGAATCGGCTATATCCATACGTTTATTAGATTCATATGATTTTAAACGTAGACGAGCGAAATCTTCAAAAATT]


>consensus_10312#1 GGACAAGAGGACAAATGTTAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAA GTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGA CTTTAATAAATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTA AAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAA ATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAA GAAAGAATATTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTATGG TGATGATGATGGAGAAATGACAGCGTTAGGTGTATCGAGATTCATTGTCACTGTTGGATC AGCTGTAGATGAATCGGCTATATCCATACGTTTATCAGATTCATATGATTTTAAACGTAG ACGAGCGAAATCTTCAAAAATT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10312#0      TGTATTAGTTTTTACAAGGAAACAAATTGATTATACTATTTTCGGCGAAAGATACATATA 60
consensus_10312#1      ------------------------------------------------------------
                                                                                   

consensus_10312#0      AAACAAAGAAAAACCAACGGAACATGGAGAGAGAGAGAAAGGGAGAGAAAAGGACAAGAG 120
consensus_10312#1      ---------------------------------------------------GGACAAGAG 9
                                                                          *********

consensus_10312#0      GACAAATGTTAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTG 180
consensus_10312#1      GACAAATGTTAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTG 69
                       ************************************************************

consensus_10312#0      ACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAA 240
consensus_10312#1      ACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAA 129
                       ************************************************************

consensus_10312#0      ATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTG 300
consensus_10312#1      ATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTG 189
                       ************************************************************

consensus_10312#0      AATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTC 360
consensus_10312#1      AATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTC 249
                       ************************************************************

consensus_10312#0      ATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATA 420
consensus_10312#1      ATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATA 309
                       ************************************************************

consensus_10312#0      TTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGA 480
consensus_10312#1      TTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGA 369
                       ************************************************************

consensus_10312#0      TGGAGAAATGACAATAAAACATATTTAGTCAGTAATGTTGGTGGCGGTATTGATGATGAT 540
consensus_10312#1      TGGAGAAATGACAGCGTTAGGTGTATCGAGATTCATTGTCACTGTTGGATCAGC--TGTA 427
                       *************     *  * * * *  * * **  *    *  * **      **  

consensus_10312#0      GACGATTTAATTTTTGAAGATTTCGCTCGTCTACGTTTAAAATCATATGAATCTGATAAA 600
consensus_10312#1      GATGAATCGGCTATA------TCCATACGTTTA---TCAGATTCATATGATTTT---AAA 475
                       ** ** *    * *       * *   *** **   * * * ******** * *   ***

consensus_10312#0      CGTATGGATATAGCCGATTCATCTACAGCTGATCCAACAGTGACAATG 648
consensus_10312#1      CGTA--GACG-AGCGAAATCTTCAAAAATT------------------ 502
                       ****  **   ***  * ** ** * *  *                  




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)