These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10312#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 648 fasta sequence [TGTATTAGTTTTTACAAGGAAACAAATTGATTATACTATTTTCGGCGAAAGATACATATAAAACAAAGAAAAACCAACGGAACATGGAGAGAGAGAGAAAGGGAGAGAAAAGGACAAGAGGACAAATGTTAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAAATCA-AAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATATTAGTAGAAAATAAG-AAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGACAATAAAACATATTTAGTCAGTAATGTTGGTGGCGGTATTGATGATGATGACGATTTAATTTTTGAAGATTTCGCTCGTCTACGTTTAAAATCATATGAATCTGATAAACGTATGGATATAGCCGATTCATCTACAGCTGATCCAACAGTGACAATG] [+] EMBL CD147092 [TGTATTAGTTTTTACAAGGAAACAAATTGATTATACTATTTTCGGCGAAAGATACATATAAAACAAAGAAAAACCAACGGAACATGGAGAGAGAGAGAAAGGGAGAGAAAAGGACAAGAGGACAAATGTTAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAAATCA AAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATATTAGTAGAAAATAAG AAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGACAATAAAACATATTTAGTCAGTAATGTTGGTGGCGGTATTGAT ] [+] EMBL CD141564 [ GGAGAGAAAAGGACAAGAGGACAAATGTTAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAAATCA AAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAA ] [-] EMBL CD147179 [ AATCAGCAATTATTTAATTACAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATATTAGTAGAAAATAAGCCAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGGCAATAAACCATATTTAGTCAGTAATGTTGGTGGCGGTATTGATGATGATGACGATTTAATTTTTGAAGATTTCGCTCGTCTACGTTTAAAATCATATGAATCTGATAAACGTATGGATATAGCCGATTCATCTACAGCTGATCCAACAGTGACAATG] consensusID : consensus_10312#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 502 fasta sequence [GGACAAGAGGACAAATGTTAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAAATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATATTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGACAGCGTTAGGTGTATCGAGATTCATTGTCACTGTTGGATCAGCTGTAGATGAATCGGCTATATCCATACGTTTATCAGATTCATATGATTTTAAACGTAGACGAGCGAAATCTTCAAAAATT] [+] EMBL CD122378 [GGACAAGAGGACAAATGTTAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAAATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATATTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGACAGCGTT ] [+] EMBL CD122392 [GGACAAGAGGACAAATGTTAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAAATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATATTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGACAGCGTTAGGTGTATCGAGATTCATTGTCACTGTTGGATCAGCTGTAGATGAATCGGCTATATCCATACGTTTATCAGATTCATATGATTTTAAACGTAGACGAGCGAAATCTTCAAAAAT ] [+] EMBL CD122340 [GGACAAGAGGACAAATGTTAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAAATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATATTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGACAGCGTTAGGTGTATCGAGATTCATTGTCACTGTTGGATCAGCTGTAGATGAATCGGCTATATCCATACGTTTATCAGATTCATATGATTTTAAACGTAGACGAGCGAAATCTTCAAAAAT ] [+] EMBL CD122412 [GGACAAGAGGACAAATGTTAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTCTAATAAATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATATTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGACAGCGTTAGGTGTATCGAGATACATTGTCACTGTTGGATCAGCTGTAGATGAATCGGCTATATCCATACGTNTATCAGATTCATATGATTTTAAACGTAGACGAGCGAAATCTTCAAAAAT ] [+] EMBL CD122376 [GGACAAGAGGACAAATGTTAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAAATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTGAGTATTCAAGAAAGAATATTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGACAGCGTTAGGTGTATCGAGATTCATTGTCACTGTTGGATCAGCTGTAGATGAATCGGCTATATCCATACGTTTATCAGATTCATATGATTTTAAACGTAGACGAGCGAAATCTTCAAAAAT ] [+] EMBL CD122268 [GGACAAGAGGACAAATGTTAAACAGTCAAAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAAATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATATTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGACAGCGTTAGGTGTATCGAGATTCATTGTCACTGTTGGATCAGCTGTAGATGACTCGGCTATATCCATACGTNTATCAGATTCATATGATTTTAAACGTAGACGAGCGAAATCTTCAAAAAT ] [-] EMBL CD122401 [ GACAAGAGGACAAATGTTAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAAATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATATTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGACAGCGTTAGGTGTATCGAGATTCATTGTCACTGTTGGATCAGCTGTAGATGAATCGGCTATATCCATACGTTTATCAGATTCATATGATTTTAAACGTAGACGAGCGAAATCTTCAAAAATT] [-] EMBL CD122348 [ GACAAGAGGACAAATGTTAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAAATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCAT AAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATATTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGACAGCGTTAGGTGTATCGAGATTCATTGTCACTGTTGGATCAGCTGTAGATGAATCGGCTATATCCATACGTTTATCAGATTCATATGATTTTAAACGTAGACGAGCGAAATCTTCAAAAATT] [-] EMBL CD122414 [ GACAAGAGGACAAATGTTANATAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGGCTGACTTTAATAAATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATATTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGACAGCGTTAGGTGTATCGAGATTCATTGTCACTGTTGGATCAGCTGTAGATGAATCGGCTATATCCATACGTTTATCAGATTCATATGATTTTAAACGTAGACGAGCGAAATCTTCAAAAATT] [+] EMBL CD197226 [ TAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTGACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAAATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTNAGTATTCCAGAAAGAATATTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTAT ] [-] EMBL CD122405 [ CAGTCAGAATNATCTATGTTTA TTTTCCAGTTTTAAAGTTAAGCTGACCCAACAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAAATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATATTAGTAGAAAATAAGAAACTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGACAGCGTTAGGTGTATCGAGATTCATTGTCACTGTTGGATCAGCTGTAGATGAATCGGCTATATCCATACGTTTATCAGATTCATATGATTTTAAACGTAGACGAGCGAAATCTTCAAAAATT] [-] EMBL CD122294 [ ACCTGAACAATAATTAAGAAATGACTGACTTTAATAAATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTGAATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTCATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATATTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGATGGAGAAATGACAGCGTTAGGTGTATCGAGATTCATTGTCACTGTTGGATCAGCTGTAGATGAATCGGCTATATCCATACGTTTATTAGATTCATATGATTTTAAACGTAGACGAGCGAAATCTTCAAAAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10312#0 TGTATTAGTTTTTACAAGGAAACAAATTGATTATACTATTTTCGGCGAAAGATACATATA 60 consensus_10312#1 ------------------------------------------------------------ consensus_10312#0 AAACAAAGAAAAACCAACGGAACATGGAGAGAGAGAGAAAGGGAGAGAAAAGGACAAGAG 120 consensus_10312#1 ---------------------------------------------------GGACAAGAG 9 ********* consensus_10312#0 GACAAATGTTAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTG 180 consensus_10312#1 GACAAATGTTAAACAGTCAGAATAATCTATGTTTATTTTTCCAGTTTTAAAGTTAAGCTG 69 ************************************************************ consensus_10312#0 ACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAA 240 consensus_10312#1 ACCCAAAAAATCACAATCCATCAACCTGAACAATAATTAAGAAATGACTGACTTTAATAA 129 ************************************************************ consensus_10312#0 ATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTG 300 consensus_10312#1 ATCAAAATTATTTAATTAAAATTTGTTTGAAATAAACAAACGTATTAGTTAAAAGCATTG 189 ************************************************************ consensus_10312#0 AATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTC 360 consensus_10312#1 AATATCAGTAGTATTCAGTGGTAATAGTAGTAGTGTTCATAAAAAATACAAATAATCCTC 249 ************************************************************ consensus_10312#0 ATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATA 420 consensus_10312#1 ATAGTTATATATTATAGTGAAAGCAAAAGAAAAAACCATGTAAGTATTCAAGAAAGAATA 309 ************************************************************ consensus_10312#0 TTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGA 480 consensus_10312#1 TTAGTAGAAAATAAGAAATTATACATTTTTTTTTAAAAATTACTGTTATGGTGATGATGA 369 ************************************************************ consensus_10312#0 TGGAGAAATGACAATAAAACATATTTAGTCAGTAATGTTGGTGGCGGTATTGATGATGAT 540 consensus_10312#1 TGGAGAAATGACAGCGTTAGGTGTATCGAGATTCATTGTCACTGTTGGATCAGC--TGTA 427 ************* * * * * * * * ** * * * ** ** consensus_10312#0 GACGATTTAATTTTTGAAGATTTCGCTCGTCTACGTTTAAAATCATATGAATCTGATAAA 600 consensus_10312#1 GATGAATCGGCTATA------TCCATACGTTTA---TCAGATTCATATGATTTT---AAA 475 ** ** * * * * * *** ** * * * ******** * * *** consensus_10312#0 CGTATGGATATAGCCGATTCATCTACAGCTGATCCAACAGTGACAATG 648 consensus_10312#1 CGTA--GACG-AGCGAAATCTTCAAAAATT------------------ 502 **** ** *** * ** ** * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||