These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10339#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 783 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTACATTTGAATATAATTATTTGAAAATCTGGTTTTCAGCCCACATTTGACTTCACATAAAATCACAGGTCCTCGTCACCTTCATCCGGAAGAGGAGCCTCGGCAGCCATCTGAATTTCTTGCTCATATTGCCGAACCAAGTAGGGGTCGATTTGGATTTCTGGAGGCTGCATTGCAGGCATTTCTACGAACTCGAGGTTTGGGTCACCGACGAGTTTACGAAATAGCCAGAGGAATGGCTTTTCGAAATTGTAGTTGGACTTAGCGGATATGTCATAATATTGTAGG-TTTTTTTT-CCTGTGAAAAGTTATTGACTTTGCCTTCACTTTCCT-ATCTTGTATGTCAACTTTG-TTTCCACACAAA-ACAATCGGTATATTTTCGCAGACGCGAACCAAATCCCTATGCCAATTAGGCACGTTTTTGTACGTGACACGACTTGTCACATCGAACATAATTATTGCACACCGTCCCTGAATGTAATAACCATCCCTTAAACCGCCAAACTTTTCTTGGCCTGCTGTATCCCACACATTGAAGCGCATTTTACCACGTGTTGTGTGGAAATCAAGAGGGTGAACTTCAACACCCAATGTGGCGACATATTTCTTTTCAAACTCTCCAGTAATATGTCGTTTCACGAATGTTGTCTTTCCTGTACCACCATCTCCAACAAGAACTAGTTTGAAAGCTGCCACTGGTGGTTGGTCTGCCATGCCTACAGCGAATGAAGATAGGCTAAGTCCGAGTTTAAGACCAGCACTT] [+] EMBL AI395043 [TTTTTTTTTTTTTTTTTTTTTTTACATTTGAATATAATTATTTGAAAATCTGGTTTTCAGCCCACATTTGACTTCACATAAAATCACAGGTCCTCGTCACCTTCATCCGGAAGAGGAGCCTCGGCAGCCATCTGAATTTCTTGCTCATATTGCCGAACCAAGTAGGGGTCGATTTGGATTTCTGGAGGCTGCATTGCAGGCATTTCTACGAACTCGAGGTTTGGGTCACCGACGAGTTTACGAAATAGCCAGAGGAATGGCTTTTCGAAATTGTAGTTGGACTTAGCGGATATGTCATAATATTGTAGG TTTTTTTTCCCTGTGAAAAGTTATTGACTTTGCCTTCACTTTCCT ATCTTGTATGTCAACTTTGTTTTCCACACAAA ACAATCGGTA ATT ] [+] EMBL AI395466 [ TTTTTTTTTTTTTTTTACATTTGAATATAATTATTTGAAAATCTGGTTTTCAGCCCACATTTGACTTCACATAAAATCACAGGTCCTCGTCACCTTCATCCGGAAGAGGAGCCTCGGCAGCCATCTGAATTTCTTGCTCATATTGCCGAACCAAGTAGGGGTCGATTTGGATTTCTGGAGGCTGCATTGCAGGCATTTCTACGAACTCGAGGTTTGGGTCACCGACGAGTTTACGAAATAGCCAGAGGAATGGCTTTTCGAAATTGTAGTTGGACTTAGCGGATATGTCATAATATTGTAGG TTTTTTTTCCCTGTGAAAAGTTATTGACTTTGCCTTCACTTTCCT ATCTTGTATGTCAACTTTG TT ] [-] EMBL CD157944 [ CAAGTAGGGGTCGATTTGGATTTCTGGAGGCTGCATTGCAGGCATATCTACGAACTCGAGGTTTGGGTCACCGACGAGTTTACGAAATAGCCAGAGGAATGGCTTTTCGAAATTGTAGTTCGACTTAGCGGATATGTCATAATATTGTAGG TTATATT CCTGTGAAAAGTTATTGACTTTGCCTTCACTTTCCT ATCTTGTATGTCAACTTTG TTTCCACACAAA ACAATCGGTATATTTTCGCAGACGCGAACCAAATCCCTATGCCAATTAGGCACGTTTTTGTACGTGACACGACTTGTCACATCGAACATAATTATTGCA ] [-] EMBL CD179361 [ CTGGAGGCTGCATTGCAGGCATTTCTACGAACTCGAGGTTTGGGTCACCGACGAGTTTACGAAATAGCCAGAGGAATGGCTTTTCGAAATTGTAGTTGGACTTAGCGGATATGTCATAATATTGTAGG TTTTTTT CCTGTGAAAAGTTATTGACTTTGCCTTCACTTTCCT ATCTTGTATGTCAACTTTG TTTCCACACAAA ACAATCGGTATATTTTCGCAG ] [-] EMBL CD179380 [ CTGGAGGCTGCATTGCAGGCATTTCTACGAACTCGAGGTTTGGGTCACCGACGAGTTTACGAAATAGCCAGAGGAATGGCTTTTCGAAATTGTAGTTGGACTTAGCGGATATGTCATAATATTGTAGG TTTTTTT CCTGTGAAAAGTTATTGACTTTGCCTTCACTTTCCT ATCTTGTATGTCAACTTTG TTTCCACACAAA ACAATCGGTATATTTTCGCAG ] [+] EMBL CD133134 [ tctgtcCTGGAGGCTGCATTGCAGGCATTTCTACGAACTCGAGGTTTGGGTCACCGACGAGTTTACGAAATAGCCAGAGGAATGGCTTTTCGAAATTGTAGTTGGACTTAGCGGATATGTCATATTATTGT ] [+] EMBL CD063296 [ GCAGGCATTTCTACGAACTCGAGGTTTGGGTCACCGACGAGTTTACGAAATAGCCAGAGGAATGGCTTTTCGAAATTGTAGTTCGACTTAGCGGATATGTCATAATATTGTAGGTTTTTTTTT CCTGTGAAAAGTTATTGACTTTGCCTTCACTTTCCT ATCTTGTATGTCAACTTTG TTTCCACACAAA ACAATCGGTATATTTTCGCAGACGCGAACCAAATCCCTATGCCAATTAGGCACGTTTTTGTACGTGACACG ] [+] EMBL CD150636 [ atGGCATTTCTACGAACTCGAGGTTTGGGTCACCGACGAGTTTACGAAATAGCCAGAGGAATGGCTTTTCGAAATTGTAGTTCGACTTAGCGGATATGTCATAATATTGTAGG TTTTTTT CCTGTGAAAAGTTATTGACTTTGCCTTCACTTTCCTAATCTTGTATGTCAACTTTG TTTCCACACAAATACAATCGGTATATTTTCGCAGACGCGAAC ] [-] EMBL CD130533 [ anGGCATTTCTACGAACTCGAGGTTTGGGTCACCGACGAGTTTACGAAATAGCCAGAGGAATGGCTTTTCGAAATTGTAGTTGGACTTAGCGGATATGTCATAATATTGTAGG TTTTTTTT CCTGTGAAAAGTTATTGACTTTGCCTTCACTTTCCT ATCTTGTATGTCAACTTTG TTTCCACACAAA ACAATCGGTATATTTTCGCAGACGCGAACCAAATCCCTATGCCAATTAGGCACGTTTTTGTACGTGACACGACCTGTCACATCGAACATAATTATTGCA ] [+] EMBL CD177699 [ GCATTTCTACGAACTCGAGGTTTGGGTCACCGACGAGTTTACGAAATAGCCAGAGGAATGGCTTTTCGAAATTGTAGTTCGACTTAGCGGATATGTCATAATATTGTAGG TTTTTTTT CCTGTGAAAAGTTATTGACTTTGCCTTCACTTTCCC ATCTTGTATGTCAACTTTG TTTCCACACAAA ACAATCGGTATATTTTCGCAGACGCGAACCAAATCCCTATGCCAATTAGGCACGTTTTTGTACGTGACACGACTTGTCACATCGAACATAATTATTGCA ] [+] EMBL CD063563 [ TACGAACTCGAGG TTGGGTCACCGACGAGTTTACGAAATAGCCAGAGGAATGGCTTTTCGAAATTGTAGTTCGACTTAGCGGATATGTCATAATATTGTAGG TTTTTTTT CCTGTGAAAAGTTATTGACTTTGCCTTCACTTTCCT ATCTTGTATGTCAACTTTG TTTCCACACAAA ACAATCGGTATATTTTCGCAGACGCGAACCAAATCCCTATGCCAATTAGGCACGTTTTTGTACGTGACACGACTTGTCACATCGAACATAATTATTGCACACCGTCCCTGAATGTAATAACCATCCCTTAAACCGCCAAACTTTTCTTGGCCTGCTGTATCCCACACATTGAAGCGCATTTTACCACGTGTTGTGTGGAAATCAAGAGGGTGAACTTCAACACCCAATGTGGCGACATATNTCTTTTCAAACTCTCCAGTAATATGTCGTTTCACGAATGTTGTCTTTCCTGTACCACCATC ] [-] EMBL CD113076 [ CGTGACACGACTTGTCACATCGAACATAATTATTGCACACCGTCCCTGAATGTAATAACCATCCCTTAAACCGCCAAACTTTTCTTGGCCTGCTGTATCCCACACATTGAAGCGCATTTTACCACGTGTTGTGTGGAAACCAAGAGGGTGAACTTCAACACCCAATGTGGCGACATATTTCTTTTCAAACTCTCCAGTAATATGTCGTTTCACGAATGTTGTCTTTCCTGTACCACCATCTCCAACAAGAACTAGTTTGAAAGCTGCCACTGG ] [-] EMBL CD071770 [ CGTGACACGACTTGTCACATCGAACATAATTATTGCACACCGTCCCTGAATGTAATAACCATCCCTTAAACCGCCAAACTTTTCTTGGCCTGCTGTATCCCACACATTGAAGCGCATTTTACCACGTGTTGTGTGGATATCAAGAGGGTGAACTTCAACACCCAATGTGGCGACATATTTCTTTTCAAACTCTCCAGTAATATGTCGTTTCACGAATGTTGTCTTTCCTGTACCACCATCTCCAACAAGAACTAGTTTGAAAGCTGCCACTGG ] [+] EMBL CD199392 [ GTGTTGTGTGGAAATCAAGAGGGTGAACTTCAACACCCAATGTGGCGACATATTTCTTTTCAAACTCTCCAGTAATATGTCGTTTCACGAATGTTGTCTTTCCTGTACCACCATCTCCAACAAGAACTAGTTTGAAAGCTGCCACTGGTGGTTGGTCTGCCATGCCTACAGCGAATGAAGATAGGCTAAGTCCGAGTTTAAGACCAGCACTT] consensusID : consensus_10339#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 215 fasta sequence [CGTGACACGACTTGTCACATCGAACATAATTATTGCACACCGTCCCTGAATGTAATAACCATCCCTTAAACCGCCAAACTTTTCTTGGCCACGTGTTGTGTGGAAATCAAGAGGGTGAACTTCAACACCCAATGTGGCGACATATTTCTTTTCAAACTCTCCAGTAATATTCGTTTCACGAATGTTTCTTTCCTTACCACCTTCCTTCTTTCTCT] [-] EMBL CD144499 [CGTGACACGACTTGTCACATCGAACATAATTATTGCACACCGTCCCTGAATGTAATAACCATCCCTTAAACCGCCAAACTTTTCTTGGCCACGTGTTGTGTGGAAATCAAGAGGGTGAACTTCAACACCCAATGTGGCGACATATTTCTTTTCAAACTCTCCAGTAATATTCGTTTCACGAATGTTTCTTTCCTTACCACCTTCCTTCTTTCTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10339#0 TTTTTTTTTTTTTTTTTTTTTTTACATTTGAATATAATTATTTGAAAATCTGGTTTTCAG 60 consensus_10339#1 ------------------------------------------------------------ consensus_10339#0 CCCACATTTGACTTCACATAAAATCACAGGTCCTCGTCACCTTCATCCGGAAGAGGAGCC 120 consensus_10339#1 ------------------------------------------------------------ consensus_10339#0 TCGGCAGCCATCTGAATTTCTTGCTCATATTGCCGAACCAAGTAGGGGTCGATTTGGATT 180 consensus_10339#1 ------------------------------------------------------------ consensus_10339#0 TCTGGAGGCTGCATTGCAGGCATTTCTACGAACTCGAGGTTTGGGTCACCGACGAGTTTA 240 consensus_10339#1 ------------------------------------------------------------ consensus_10339#0 CGAAATAGCCAGAGGAATGGCTTTTCGAAATTGTAGTTGGACTTAGCGGATATGTCATAA 300 consensus_10339#1 ------------------------------------------------------------ consensus_10339#0 TATTGTAGGTTTTTTTTCCTGTGAAAAGTTATTGACTTTGCCTTCACTTTCCTATCTTGT 360 consensus_10339#1 ------------------------------------------------------------ consensus_10339#0 ATGTCAACTTTGTTTCCACACAAAACAATCGGTATATTTTCGCAGACGCGAACCAAATCC 420 consensus_10339#1 ------------------------------------------------------------ consensus_10339#0 CTATGCCAATTAGGCACGTTTTTGTACGTGACACGACTTGTCACATCGAACATAATTATT 480 consensus_10339#1 --------------------------CGTGACACGACTTGTCACATCGAACATAATTATT 34 ********************************** consensus_10339#0 GCACACCGTCCCTGAATGTAATAACCATCCCTTAAACCGCCAAACTTTTCTTGGCCTGCT 540 consensus_10339#1 GCACACCGTCCCTGAATGTAATAACCATCCCTTAAACCGCCAAACTTTTCTTGGCC---- 90 ******************************************************** consensus_10339#0 GTATCCCACACATTGAAGCGCATTTTACCACGTGTTGTGTGGAAATCAAGAGGGTGAACT 600 consensus_10339#1 -----------------------------ACGTGTTGTGTGGAAATCAAGAGGGTGAACT 121 ******************************* consensus_10339#0 TCAACACCCAATGTGGCGACATATTTCTTTTCAAACTCTCCAGTAATATGTCGTTTCACG 660 consensus_10339#1 TCAACACCCAATGTGGCGACATATTTCTTTTCAAACTCTCCAGTAATAT-TCGTTTCACG 180 ************************************************* ********** consensus_10339#0 AATGTTGTCTTTCCTGTACCACCATCTCCAACAAGAACTAGTTTGAAAGCTGCCACTGGT 720 consensus_10339#1 AATGTT-TCTTTCCT-TACCACC--TTCCTTCTTTCTCT--------------------- 215 ****** ******** ******* *** * ** consensus_10339#0 GGTTGGTCTGCCATGCCTACAGCGAATGAAGATAGGCTAAGTCCGAGTTTAAGACCAGCA 780 consensus_10339#1 ------------------------------------------------------------ consensus_10339#0 CTT 783 consensus_10339#1 --- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||