These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10348#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1158 fasta sequence [CGGGCCAGAATTCGGCACGAGG-GTCGCG--AGG--TGAGTCGCCCGCAACCGTAGCTTCTGCAACCCAAAGGTTGGTCCCCAGAAGGCAAACAATAGAAGATGCTTATTCACCACCAG-CGAATTTCTTAGAGATTGACGTGTGCAACCCTCTCACTCACGAGGATGGTAAAGACCGCTTCACAGACTACGAAGTTAGTCTCAGGACAAATTTACCCATATTTGCACACAAAGAGTCATCGGTTCGTCGTAGGTACAGCGATTTCAAATGGCTTCGTGACGAACTGGACCGTGAAAGCAAGATTGTTGTTCCTCGATTACCAAGCAAAGCATGGAAACGCCAATTACCTTTTCGGGCAGATAAAGGTATATTTGATGAGGATTTCATCGAGGAGCGACGAAAAGGACTAGAAAATTTCATTAACAAGGTGGCTGGACATCCATTAGCTCAAAATGAAAAATGTTTACATATGTTTCTTCAAGAAAAAGTAATTGATCGTAATTGTCGACTTGGAAAGTTACGTAACATTTAATTAAAGGAATCAAGTATAATCCAATTTACAAAATCAATTCATTCAATATAATCTGATTGTTGCTGTGAATTGTTTCAAATGAGCTAGAAGATTTATCAAAT-AAACCTGGTGGTGCTTATATATTCACTTATCGCTTTCTTCTTTTACTGTTTTCATTTGTTTTGTCATTAATTGTATATTTTCTTATATATATAATATATCTTTTAGAGTTATATTCATGTGCTTATCCAACCTTTTTCCCCAATATTTCTCTGTTTTTTCCCATGGACACACTACTTCACATTCATAAAACGCTAATATATTGTTAGTCATAGAGAGGATTACTCATTTCTGTCAGTTCTCTATTCATCTCTGTATTAATTTGGTATGGCAACTCGAGCTGATGTACGTACGTACAAAGTTCTACGTTGTGACTGACTGACTGACTGACTGACTATCTATTTAAGAAACTTTTCGTCATATCTCCAAGTATCAATATATTCGTTTGCATACATGTGTGTGTATTCATTTGCCTATCTCTAGGATCATCAGTAAATGTACTAATCATTGTTTATATATATATTAATACTGTGATTCATTGATTACTTTGCTAATAAATATAATTAATGAGATCTAANAAAAAAAAAAAAAA] [+] EMBL CD078162 [CGGGCCAGAATTCGGCACGAGG GTCGCGGTATGCTTGAGTCGCCCGCAACCGTAGCTTCTGCAACCCAAAGGTTGGTCCCCAGAAGGCAAACAATAGAAGATGCTTATTCACCACCAG CGAATTTCTTAGAGATTGACGTGTGCAACCCTCTCACTCACGAGGATGGTAAAGACCGCTTCACAGACTACGAAGTTAGTCTCAGGACAAATTTACCCATATTTGCACACAAAGAGTCATCGGTTCGTCGTAGGTACAGCGATTTCAAATGGCTTCGTGACGAACTGGACCGTGAAAGCAAGATTGTTGTTCCTCGATTACCAAGCAAAGCATGGGAACGCCAATTACCTTTTCGGGCAGAT ] [+] EMBL CD083726 [ aTCGGCACGAGGCGGCACG AGG TGAGTCGCCCGCAACCGTAGCTTCTGCAACCCAAAGGTTGGTCCCCAGAAGGCAAACAATAGAAGATGCTTATTCACCACCAGACGAATTTCTTAGAGATTGACGTGTGCAACCCTCTCACTCACGAGGATGGTAAAGACCGCTTCACAGACTACGAAGTTAGTCTCAGGACAAATTTACCCATATTTGCACACAAAGAGTCATCGGTTCGTCGTAGATACAGCGATTTCAAATGGCTTCGTGACGAACTGGACCGTGAAAGCAAGATTGTTGTTCCTCGATTACCAAGCAAAGCATGGAAACGCCAATTACCTTTTCGGGCAGATAAAGGTATATTTGATGAGGATTTCATCGAGGAGCGACGAAAAGGACTAGAAAATTTCATTAACAAGGTGGCTGGACATCCATTAGCTCAAAATGAAAAATGTTTACATATGTTTCTTCAAGAAAAAGTAATTGATCGTAATTGTCGACTTGGAGAGTTACGTAACATTTAATTAAAGGAATCAAGTATAATCCAATTTACAAA ] [+] EMBL AI977713 [ TGAGTCGCCCGCAACCGTAGCTTCTGCAACCCAAAGGTTGGTCCCCAGAAGGCAAACAATAGAAGATGCTTATTCACCACCAG CGAATTTCTTAGAGATTGACGTGTGCAACCCTCTCACTCACGAGGATGGTAAAGACCGCTTCACAGACTACGAAGTTAGTCTCAGGACAAATTTACCCATATTTGCACACAAAGAGTCATCGGTTCGTCGTAGATACAGCGATTTCAAATGGCTTCGTGACGAACTGGACCGTGAAAGCAAGATTGTTGTTCCTCGATTACCAAGCAAAGCATGGAAACGCCAATTACCTTTTCGGGCAGATAAAGGTATATTTGATGAGGATTTCATCGAGGAGCGACGAAAAGGACTAGAAAATTTCATTAACAAGGTGGCTGGACATCCATTAGCTCAAAATGAAAAATGTTTACATATGTTTCTTCAAGAAAAAGTAATTGATCGTAATTGTCGACTTGGAAAGTTACGTAACATTTAATTAAAGGAATCAAGTATAATCCAATTTACAAAATCAATTCATTCAATATAATCTGATTGGTGCTGTGAATTG TTCAAATGAGCTAG ] [+] EMBL AW017320 [ gct TGAGTCGCCCGCAACCGTAGCTTCTGCAACCCAAAGGTTGGTCCCCAGAAGGCAAACAATAGAAGATGCTTATTCACCACCAG CGAATTTCTTAGAGATTGACGTGTGCAACCCTCTCACTCACGAGGATGGTAAAGACCGCTTCACAGACTACGAAGTTAGTCTCAGGACAAATTTACCCATATTTGCACACAAAGAGTCATCGGTTCGTCGTAGATACAGCGATTTCAAATGGCTTCGTGACGAACTGGACCGTGAAAGCAAGATTGTTGTTCCTCGATTACCAAGCAAAGCATGGAAACGCCAATTACCTTTTCGGGCAGATAAAGGTATATTTGATGAGG ] [+] EMBL CD180887 [ TAGAGATTGACGTGTGCAACCCTCTCACTCACGAGGATGGTAAAGACCGCTTCACAGACTACGAAGTTAGTCTCAGGACAAATTTACCCATATTTGCACACAAAGAGTCATCGGTTCGTCGTAGGTACAGCGATTTCAAATGGCTTCGTGACGAACTGGACCGTGAAAGCAAGATTGTTGTTCCTCGATTACCAAGCAAAGCATGGAAACGCCAATTACCTTTTCGGGCAGATAAAGGTATATTTGATGAGGATTTCATCGAGGAGCGACGAAAAGGACTAGAAAATTTCATTAACAAGGTGGCTGGACATCCATTAGCTCAAAATGAAAAATGTTTACATATGTTTCTTCAAGAAAAAGTAATTGATCGTAATTGTCGACTTGGAAAGTTACGTAACATTTAATTAAAGGAATCAAGTATAATCCAATTTACAAAATCAATTCATTCAATATAATCTGATTGTTGCTGTGAATTGTTTCANATGAGCTAGAAGATTTA ] [+] EMBL CD084255 [ TAGTCTCAGGACAAATTTACCCATATTTGCACACAAAGAGTCATCGGTTCGTCGTAGGTACAGCGATTTCAAATGGCTTCGTGACGAACTGGACCGTGAAAGCAAGATTGTTGTTCCTCGATTACCAAGCAAAGCATGGAAACGCCAATTACCTTTTCGGGCAGATAAAGGTATATTTGATGAGGATTTCATCGAGGAGCGACGAAAAGGACTAGAAAATTTCATTAACAAGGTGGCTGGACATCCATTAGCTCAAAATGAAAAATGTTTACATATGTTTCTTCAAGAAAAAGTAATTGATCGTAATTGTCGACTTGGAAAGTTACGTAACATTTAATTAAAGGAATCAAGTATAATCCAATTTACAAAATCAATTCATTCAATATAATCTGATTGTTGCTGTGAATTGTTTCACATGAGCTAGAAGATat ] [+] EMBL CD083869 [ cacgaggCCATATTTGCACACAAAGAGTCATCGG TCGTCGTATGTACAGCGATTTCAAATGGCTTCGTGACGAACTGGACCGTGAAAGCAAGATTGTTGTTCCTCGATTACCAAGCAAAGCATGGAAACGCCAATTACCTTTTCGGGCAGATAAAGGTATATTTGATGAGGATTTCATCGAGGAGCGACGAAGAGGACTAGAAAATTTCATTAACAAGGTGGCTGGACATCCATTAGCTCAAAATGAAAAATGTTTACATATGTTTCTTCAAGAAAAAGTAATTGATCGTAATTGTCGACTTGGAAAGTTACGTAACATTTAATTAAAGGAATCAAGTATAATCCAATTTACAAAATCAATTCATTCAATATAATCTGATTGTTGCTGTGAATTGTTTCAAATGAGCTAGAAGATTTATCAAAT AAACCTGGTGGTGCTTATATATTCACTTATCGC ] [-] EMBL CD115048 [ AAGCATGGAAACGCCAATTACCTTTTCGGGCAGATAAAGGTATATTTGATGAGGATTTCATCGAGGAGCGACGAAAAGGACTAGAAAATTTCATTAACAAGGTGGCTGGACATCCATTAGCTCAAAATGAAAAATGTTTACATATGTTTCTTCAAGAAAAAGTAATTGATCGTAATTGTCGACTTGGAAAGTTACGTAACATTTAATTAAAGGAATCAAGTATAATCCAATTTACAGAATCAATTCATTCAATATAATCTGATTGTTGCTGTGAATTGTTTCAAATGAGCTAGAAGATTTATCAAAT AAACCTGGTGGTGCTTATATATTCACTTATCGCTCTCTTCTTTTACTGTTTTCATTTGTTTTGTCATTAATTGTATATTTTCTTATATATATAATATATCTTTTAGAGTTATATTCATGTGCTTATCCAACCTTTTTCCCCAATATTTCTCTGTTTTTTCCCATGGACACACTACTTCACATTCATAAAACGCTAATATATTGTTAGTCATAGAGAGGATTACTCATTTCTGTCAGTTC ] [+] EMBL AA999218 [ TTCGGGCAGATAAAGGTATATTTGATGAGGATTTCATCGAGGAGCGACGAAAAGGACTAGAAAATTTCATTAACAAGGTGGCTGGACATCCATTAGCTCAAAATG AAAATGTTTACATATGTTTCTTCAAGAAAAAGTAATTGATCGTAATTGTCGACTTGGAAAGTTACGTAACATTTAATTAAAGGAATCAAGTATAATCCAATTTACAAAATCAATTCATTCAATATAATCTGATTGTTGCTGTGAATTGTTTCAAATGAGCTAGAAGATTTATCAAAT AAACCTGGTGGTGCTTATATATTCACTTATCGCTTTCTTCTTTTACTGTTTTCATTTGTTTTGCCAATAATTGGATATTTTCTTATATATATAATATATCTTTTAGAGTTATATTCATGTGCCCATCCAACTTTTTT ] [+] EMBL SMAA43874 [ AGATAAAGGTATATTTGATGAGGATTTCATCGAGGAGCGACGAAAAGGACTAGAAAATTTCATTAACAAGGTGGCTGGACATCCATTAGCTCAAAATGAAAAATGTTTACATATGTTTCTTCAAGAAAAAGTAATTGATCGTAATTGTCGACTTGGAAAGTTACGTAACATTTAATTAAAGGAATCAAGTATAATCCAATTTACAAAATCAATTCATTCAATATAATCTGATTGTTGCTGTGAATTGTTTCAAATGAGCTAGAAGATTTATCAAAT AAACCTGGTGGTGCTTATATATTCACTTATCGCTTTCTTCTTTTACTGGTTTCATTTGGTTTGGCATTAATTGAATATTTTCTTATATATATAATATCTCTTTTAGAGTTATATTCATGTGCTca ] [-] EMBL BG932837 [ ACAAGGTGGCTGGACATCCATTAGCTCAAAATGAAAAATGTTTACATATGTTTCTTCAAGAAAAAGTGATTGATCGTAATTGTCGACTTGGAAAGTTACGTAACATTTAATTAAAGGAATCAAGTATAATCCAATTTACAAAATCAATTCATTCAATATAATCTGATTGTTGCTGTGAATTGTTTCAAATGAGCTAGAAGATTTATCAAAT A ] [-] EMBL AI394758 [ GATTATTCAAATAAAACCTGGTGGTGCTTATATATTCACTTATCGCTGTCTTCTTTTACTGTTTTCATTTGTTTTGTCATTAATGGTATATTTTCTTATATATATAATATATCTTTTAGAGTTATATTCATGTGCTTATCCAACCTTTTTCCCCAATATTTCTCTGTTTTTTCCCATGGACACACTACTTCACATTCATAAAACGCTAATATATTGTTAGTCATAGAGAGGATTACTCATTTCTGTCAGTTCTCTATTCATCTCTGTATTAATTTGGTATGGCAACTCGAGCTGATGTACGTACGTACAAAGTTCTACGTTGTGACTGACTGACTGACTGACTGACTATCTATTTAAGAAACTTTTCGTCATATCTCCAAGTATCAATATATTCGTTTGCATACATGTGTGTGTATTCATTTGCCTATCTCTAGGATCATCAGTAAATGTACTAATCATTGTTTATATATATATTAATACTGTGATTCATTGATTACTTTGCTAATAAATATAATTAATGAGATCTAANAAAAAAAAAAAAAA] [+] EMBL SM702 [ GAGGATTACTCATTTCTGTCAGTTCTCTATTCATCTCTGTATTAATTTGGTATGGCAACTCGAGCTGATGTACGTACGTACAAAGTTCTACGTTGTGACTGACTGACTGACTGACTGACTATCTATTTAAGAAACTTTTCGTCATATCTCCAAGTATCAATATATTCGNTTGCATACATGTGTGTGTATTCATTTGCCTATCTCTAGGATCATCAGTAAATGTACTAATCATTGTTTATATATATATTAATACTGTGATTCATGGATTACTTNGNTAATAAATATAATn ] consensusID : consensus_10348#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 574 fasta sequence [CCCTCCGAGCCAANAATTCGGCACGAGGTGATTGTTGCTGTGAATTGTTTCAAATGAGCTAGAAGATTTATCAAATAAACCTGGTGGTGCTTATATATTCACTTATCGCTTTCTTCTTTTACTGTTTTCATTTGTTTTGTCATTAATTGTATATTTTCTTATATATATAATATATCTTTTAGAGTTATATTCATGTGCTTATCCAACCTTTTTCCCCAATATTTCTCTGTTTTTTCCCATGGACAAACTACTTCACATTCATAAAACGCTAATATATTGTTAGTCATAGAGAGGATTACTCATTTCTGTCAGTTCTCTATTCATCTCTGTATTAATTTGGTATGGCAACTCGAGCTGATGTACGTACGTACAAAGTTCTACGTTGTGACTGACTGACTGACTGACTGACTATCTATTTAAGAAACTTTTCGTCATATCTCCAAGTATCAATATATTCGTTTGCATACATGTGTGTGTATTCATTTGCCTATCTCTAGGATCATCAGTAAATGTACTAATCATTGTTTATATATATATTAATACTGTGATTCATTGATTACTTTGCTAATAAATA] [+] EMBL CD082049 [CCCTCCGAGCCAANAATTCGGCACGAGGTGATTGTTGCTGTGAATTGTTTCAAATGAGCTAGAAGATTTATCAAATAAACCTGGTGGTGCTTATATATTCACTTATCGCTTTCTTCTTTTACTGTTTTCATTTGTTTTGTCATTAATTGTATATTTTCTTATATATATAATATATCTTTTAGAGTTATATTCATGTGCTTATCCAACCTTTTTCCCCAATATTTCTCTGTTTTTTCCCATGGACAAACTACTTCACATTCATAAAACGCTAATATATTGTTAGTCATAGAGAGGATTACTCATTTCTGTCAGTTCTCTATTCATCTCTGTATTAATTTGGTATGGCAACTCGAGCTGATGTACGTACGTACAAAGTTCTACGTTGTGACTGACTGACTGACTGACTGACTATCTATTTAAGAAACTTTTCGTCATATCTCCAAGTATCAATATATTCGTTTGCATACATGTGTGTGTATTCATTTGCCTATCTCTAGGATCATCAGTAAATGTACTAATCATTGTTTATATATATATTAATACTGTGATTCATTGATTACTTTGCTAATAAAT ] [-] EMBL CD075662 [ GATTGTTGCTGTGAATTGTTTCAAATGAGCTAGAAGATTTATCAAATAAACCTGGTGGTGCTTATATATTCACTTATCGCTTTCTTCTTTTACTGTTTTCATTTGTTTTGTCATTAATTGTATATTTTCTTATATATATAATATATCTTTTAGAGTTATATTCATGTGCTTATCCAACCTTTTTCCCCAATATTTCTCTGTTTTTTCCCATGGACAAACTACTTCACATTCATAAAACGCTAATATATTGTTAGTCATAGAGAGGATTACTCATTTCTGTCAGTTCTCTATTCATCTCTGTATTAATTTGGTATGGCAACTCGAGCTGATGTACGTACGTACAAAGTTTTACGTTGTGACTGACTGACTGACTGACTGACTATCTATTTAAGAAACTTTTCGTCATATCTCCAAGTATCAATATATTCGTTTGCATACATGTGTGTGTATTCATTTGCCTATCTCTAGGATCATCAGTAAATGTACTAATCATTGTTTATATATATATTAATACTGTGATTCATTGATTACTTTGCTAATAAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10348#0 CGGGCCAGAATTCGGCACGAGGGTCGCGAGGTGAGTCGCCCGCAACCGTAGCTTCTGCAA 60 consensus_10348#1 ------------------------------------------------------------ consensus_10348#0 CCCAAAGGTTGGTCCCCAGAAGGCAAACAATAGAAGATGCTTATTCACCACCAGCGAATT 120 consensus_10348#1 ------------------------------------------------------------ consensus_10348#0 TCTTAGAGATTGACGTGTGCAACCCTCTCACTCACGAGGATGGTAAAGACCGCTTCACAG 180 consensus_10348#1 ------------------------------------------------------------ consensus_10348#0 ACTACGAAGTTAGTCTCAGGACAAATTTACCCATATTTGCACACAAAGAGTCATCGGTTC 240 consensus_10348#1 ------------------------------------------------------------ consensus_10348#0 GTCGTAGGTACAGCGATTTCAAATGGCTTCGTGACGAACTGGACCGTGAAAGCAAGATTG 300 consensus_10348#1 ------------------------------------------------------------ consensus_10348#0 TTGTTCCTCGATTACCAAGCAAAGCATGGAAACGCCAATTACCTTTTCGGGCAGATAAAG 360 consensus_10348#1 ------------------------------------------------------------ consensus_10348#0 GTATATTTGATGAGGATTTCATCGAGGAGCGACGAAAAGGACTAGAAAATTTCATTAACA 420 consensus_10348#1 ------------------------------------------------------------ consensus_10348#0 AGGTGGCTGGACATCCATTAGCTCAAAATGAAAAATGTTTACATATGTTTCTTCAAGAAA 480 consensus_10348#1 ------------------------------------------------------------ consensus_10348#0 AAGTAATTGATCGTAATTGTCGACTTGGAAAGTTACGTAACATTTAATTAAAGGAATCAA 540 consensus_10348#1 ------------------------------------------------------------ consensus_10348#0 GTATAATCCAATTTACAAAATCAATTCATTCAATATAATCTGATTGTTGCTGTGAATTGT 600 consensus_10348#1 -----------CCCTCCGAGCCAANA-ATTCGGCACGAGGTGATTGTTGCTGTGAATTGT 48 * * *** **** * * ******************** consensus_10348#0 TTCAAATGAGCTAGAAGATTTATCAAATAAACCTGGTGGTGCTTATATATTCACTTATCG 660 consensus_10348#1 TTCAAATGAGCTAGAAGATTTATCAAATAAACCTGGTGGTGCTTATATATTCACTTATCG 108 ************************************************************ consensus_10348#0 CTTTCTTCTTTTACTGTTTTCATTTGTTTTGTCATTAATTGTATATTTTCTTATATATAT 720 consensus_10348#1 CTTTCTTCTTTTACTGTTTTCATTTGTTTTGTCATTAATTGTATATTTTCTTATATATAT 168 ************************************************************ consensus_10348#0 AATATATCTTTTAGAGTTATATTCATGTGCTTATCCAACCTTTTTCCCCAATATTTCTCT 780 consensus_10348#1 AATATATCTTTTAGAGTTATATTCATGTGCTTATCCAACCTTTTTCCCCAATATTTCTCT 228 ************************************************************ consensus_10348#0 GTTTTTTCCCATGGACACACTACTTCACATTCATAAAACGCTAATATATTGTTAGTCATA 840 consensus_10348#1 GTTTTTTCCCATGGACAAACTACTTCACATTCATAAAACGCTAATATATTGTTAGTCATA 288 ***************** ****************************************** consensus_10348#0 GAGAGGATTACTCATTTCTGTCAGTTCTCTATTCATCTCTGTATTAATTTGGTATGGCAA 900 consensus_10348#1 GAGAGGATTACTCATTTCTGTCAGTTCTCTATTCATCTCTGTATTAATTTGGTATGGCAA 348 ************************************************************ consensus_10348#0 CTCGAGCTGATGTACGTACGTACAAAGTTCTACGTTGTGACTGACTGACTGACTGACTGA 960 consensus_10348#1 CTCGAGCTGATGTACGTACGTACAAAGTTCTACGTTGTGACTGACTGACTGACTGACTGA 408 ************************************************************ consensus_10348#0 CTATCTATTTAAGAAACTTTTCGTCATATCTCCAAGTATCAATATATTCGTTTGCATACA 1020 consensus_10348#1 CTATCTATTTAAGAAACTTTTCGTCATATCTCCAAGTATCAATATATTCGTTTGCATACA 468 ************************************************************ consensus_10348#0 TGTGTGTGTATTCATTTGCCTATCTCTAGGATCATCAGTAAATGTACTAATCATTGTTTA 1080 consensus_10348#1 TGTGTGTGTATTCATTTGCCTATCTCTAGGATCATCAGTAAATGTACTAATCATTGTTTA 528 ************************************************************ consensus_10348#0 TATATATATTAATACTGTGATTCATTGATTACTTTGCTAATAAATATAATTAATGAGATC 1140 consensus_10348#1 TATATATATTAATACTGTGATTCATTGATTACTTTGCTAATAAATA-------------- 574 ********************************************** consensus_10348#0 TAANAAAAAAAAAAAAAA 1158 consensus_10348#1 ------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||