These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10351#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1144 fasta sequence [GAGGCCANAATTTGGCACGAGGCGCACACTGAATTTAGTGATGAACCTTTACTGAAACTTAATGATTCTGCGTCTGGCAGTTCACCAAAAGCTGTGACTAGATATGAAACAAGCTTGTCAGAAGCAGCATCTAATTGCAAGAAAAACTCCAAATTTGACTTCTTGGATCTTTTGACAACATTTACTAAGTCAAATCAATGTATGCTTGGAATTGATGAAGCTGGTAGAGGTCCAGTCCTTGGCCCTATGGTATATGCATGTGCCTTGTCACCAATAAGCCAGTTGAATGAATTAGAAACTATTGGACTTGCTGATTCAAAGACATTAAATGAAAATCAACGGGAGAAACTTCTTAAAGAAATGTTGAATAAATGTGATTGGATATCAGCGGTCGTCCATGTCATTAGTCCTGTATACATTACCGAGAAAATGCTAGATAAGTCGAAAACTAGTCTAAATGTTATATCTCATGATTCAGCCATACAGCTTATTCAATCAGTTCTTGACAGTGGAGTAAATTTAGTTGAGGTTTACGTTGATACTGTTGGCAAAGCTGAACATTATGAAACTAAACTGCAAAATCTTTTTCCTCAATTAAAAATACGTGTTGAAAGCAAAGCTGATGATACTTATCCAATTGTGAGTGCTGCTAGTATCTTTGCAAAAGTTACTCGTGATCGAGTTCTTCAAATGTGGCCTAAAGAAGAACGTGGTAGTGTACCCGAAGGCACTGGTCTTGGTTCTGGCTATCCAGGTGATCCCGTTACTAAAAGTTATTTACGTGCATGTATGGATCCAGTTTTTGGCTTCCCATCTCTTGTGAGATCTAGTTGGTCAACCTCATCTTCTCTATTAGACCAACATGGTGTATCAGTTAGGTGGGAAGATGACGAAACACACGAAGAAGTGCTTCAAGCTAAAAAACTTGCACGAAAACGCGAACATTCAAAAGGTACTTGCAAACTATCGAATTTTTTCAATAATGCTCAATCGAAATCATCCACACCTGATGCATTACAGAGACAACCATTTTTTGTACGAACTGGTCTTGTGCATGTTCAAACTATCACGTAAATTATATGAAATATATTATGTATAATTTTTTTGTATAGATGTTTCATCATATTTCT-CTAATAAAATCGAT] [+] EMBL CD081059 [GAGGCCANAATTTGGCACGAGGCGCACACTGAATTTAGTGATGAACCTTTACTGAAACTTAATGATTCTGCGTCTGGCAGTTCACCAAAAGCTGTGACTAGATATGAAACAAGCTTGTCAGAAGCAGCATCTAATTGCAAGAAAAACTCCAAATTTGACTTCTTGGATCTTTTGACAACATTTACTAAGTCAAATCAATGTATGCTTGGAATTGATGAAGCTGGTAGAGGTCCAGTCCTTGGCCCTATGGTATATGCATGTGCCTTGTCACCAATAAGCCAGTTGAATGAATTAGAAACTATTGGACTTGCTGATTCAAAGACATTAAATGAAAATCAACGGGAGAAACTTCTTAAAGAAATGTTGAATAAATGTGATTGGATATCAGCGGTCGTCCATGTCATTAGTCCTGTATACATTACCGAGAAAATGCTAGATAAGTCGAAAACTAGTCTAAATGTTATATCTCATGATTCAGCCATACAGCTTATTCAATCAGTTCTTGACAGTGGAGTAAATTTAGTTGAGGTTTACGTTGATACTGTTGGCAAAGCTGAACATTATGAAACTAAACTGCAAAATCTTTTTCCTCAATTAAAAATACGTGTTGAAAGCAAAGCTGATGATACTTATCCAATTGTGAGTGCTGCTAGTATCTTTGCAAAAGTTACTCGTGATCGAGTTCTTC AATGTGGCCTAAAGAAG ACGTGGTAGTGTACCCGAAGGCACTG ] [+] EMBL CD082338 [ tnacatCGGACACTGTATTTAGTGATGAACCTTTACTGAAACTTAATGACCCTGCGTCTGGCAGTTCACCAAAAGCTGTGACTAGATATGAAACAAGCTTGTCAGTAGCAGCATCTAATTGCAAGAAAAACTCCAAATTTGACTTCTTGGATCTTTTGACAACATTTACTAAGTCAAATCAATGTATGCTTGGAATTGATGAAGCTGGTAGAGGTCCAGTCCTTGGCCCTATGGTATATGCATGTGCCTTGTCACCAATAAGCCAGTTGAATGAATTAGAAACTATTGGACTTGCTGATTCAAAGACATTAAATGAAAATCAACGGGAGAAACTTCTTAAAGAAATGTTGAATAAATGTGATTGGATATCAGCGGTCGTCCATGTCATTAGTCCTGTATACATTACCGAGAAAATGCTAGATAAGTCGAAAACTAGTCTAAATGTTATATCTCATGATTCAGCCATACAGCTTATTCAATCAGTTCTTGACAGTGGAGTAAATTTAGTTGAGGTTTACGTTGATACTGTTGGCAAAGCTGAACATTATGAAACTAAACTGCAAAATCTTTCTCCTCAATTAANAATACGTGTTGAAAGCAGAGCTGATGATACTTATCCAATTGT ] [-] EMBL CD073992 [ ACTAGTCTAAATGTTATATCTCATGATTCAGCCATACAGCTTATTCAATCAGTTCTTGACAGTGGAGTAAATTTAGTTGAGGTTTACGTTGATACTGTTGGCAAAGCTGAACATTATGAAACTAAACTGCAAAATCTTTTTCCTCAATTAAAAATACGTGTTGAAAGCAAAGCTGATGATACTTATCCAATTGTGAGTGCTGCTAGTATCTTTGCAAAAGTTACTCGTGATCGAGTTCTTCAAATGTGGCCTAAAGAAGAACGTGGTAGTGTACCCGAAGGCACTGGTCTTGGTTCTGGCTATCCAGGTGATCCCGTTACTAAAAGTTATTTACGTGCATGTATGGATCCAGTTTTTGGCTTCCCATCTCTTGTGAGATCTAGTTGGTCAACCTCATCTTCTCTATTAGACCAACATGGTGTATCAGTTAGGTGGGAAGATGACGAAACACACGAAGAAGTGCTTCAAGCTAAAAAACTTGCACGAAAACGCGAACATTCAAAAGGTACTTGCAAACTATCGAATTTTTTCAATAATGCTCAATCGAAATCATCCACACCTGATGCATTACAGAGACAACCATTTTTTGTACGAACTGGTCTTGTGCATGTTCAAACTATCACGTAAATTATATGAAATATATTATGTATAATTTTTTTGTATAGATGTTTCATCATATTTCT CTAATAAAATCGAT] [-] EMBL CD074882 [ TATCTCATGATTCAGCCATACAGCTTATTCAATCAGTTCTTGACAGTGGAGTAAATTTAGTTGAGGTTTACGTTGATACTGTTGGCAAAGCTGAACATTATGAAACTAAACTGCAAAATCTTTTTCCTCAATTAAAAATACGTGTTGAAAGCAAAGCTGATGATACTTATCCAATTGTGAGTGCTGCTAGTATCTTTGCAAAAGTTACTCGTGATCGAGTTCTTCAAATGTGGCCTAAAGAAGAACGTGGTAGTGTACCCGAAGGCACTGGTCTTGGTTCTGGCTATCCAGGTGATCCCGTTACTAAAAGTTATTTACGTGCATGTATGGATCCAGTTTTTGGCTTCCCATCTCTTGTGAGATCTAGTTGGTCAACCTCATCTTCTCTATTAGACCAACATGGTGTATCAGTTAGGTGGGAAGATGACGAAACACACGAAGAAGTGCTTCAAGCTAAAAAACTTGCACGAAAACGCGAACATTCAAAAGGTACTTGCAAACTATCGAATTTTTTCAATAATGCTCAATCGAAATCATCCACACCTGATGCATTACAGAGACAACCATTTTTTGTACGAACTGGTCTTGTGCATGTTCAAACTATCACGTAAATTATATGAAATATATTATGTATAATTTTTTTGTATAGATGTTTCATCATATTTCT CTAATAAAATCGAT] [-] EMBL CD075210 [ ATCTCATGATTCAGCCATACAGCTTATTCAATCAGTTCTTGACAGTGGAGTAAATTTAGTTGAGGTTTACGTTGATACTGTTGGCAAAGCTGAACATTATGAAACTAAACTGCAAAATCTTTTTCCTCAATTAAAAATACGTGTTGAAAGCAAAGCTGATGATACTTATCCAATTGTGAGTGCTGCTAGTATCTTTGCAAAAGTTACTCGTGATCGAGTTCTTCAAATGTGGCCTAAAGAAGAACGTGGTAGTGTACCCGAAGGCACTGGTCTTGGTTCTGGCTATCCAGGTGATCCCGTTACTAAAAGTTATTTACGTGCATGTATGGATCCAGTTTTTGGCTTCCCATCTCTTGTGAGATCTAGTTGGTCAACCTCATCTTCTCTATTAGACCAACATGGTGTATCAGTTAGGTGGGAAGATGACGAAACACACGAAGAAGTGCTTCAAGCTAAAAAACTTGCACGAAAACGCGAACATTCAAAAGGTACTTGCAAACTATCGAATTTTTTCAATAATGCTCAATCGAAATCATCCACACCTGATGCATTACAGAGACAACCATTTTTTGTACGAACTGGTCTTGTGCATGTTCAAACTATCACGTAAATTATATGAAATATATTATGTATAATT ] [-] EMBL CD076636 [ AATC TTTTCCTCAATTAAAAATACGTG TGAAAGCAAAGCTGATGATACTTATCCAATTGTGAGTGCTGCTAGTATCTTTGCAAAAGTTACTCGTGATCGAGTTCTTCAAATGTGGCCTAAAGAAGAACGTGGTAGTGTACCCGAAGGCACTGGTCTTGGTTCTGGCTATCCAGGTGATCCCGTTACTAAAAGTTATTTACGTGCATGTATGGATCCAGTTTTTGGCTTCCCATCTCTTGTGAGATCTAGTTGGTCAACCTCATCTTCTCTATTAGACCAACATGGTGTATCAGTTAGGTGGGAAGATGACGAAACACACGAAGAAGTGCTTCAAGCTAAAAAACTTGCACGAAAACGCGAACATTCAAAAGGTACTTGCAAACTATCGAATTTTTTCAATAATGCTCAATCGAAATCATCCACACCTGATGCATTACAGAGACAACCATTTTTTGTACGAACTGGTCTTGTGCATGTTCAAACTATCACGTAAATTATATGAAATATATTATGTATAATTTTTTTGTATAGATGTTTCATCATATTTCT CTAATAAAATCGAT] [-] EMBL CD077185 [ ATCTTTTTCCTCAATTAAAAATACGTGTTGAAAGCAAAGCTGATGATACTTATCCAATTGTGAGTGCTGCTAGTATCTTTGCAAAAGTTACTCGTGATCGAGTTCTTCAAATGTGGCCTAAAGAAGAACGTGGTAGTGTACCCGAAGGCACTGGTCTTGGTTCTGGCTATCCAGGTGATCCCGTTACTAAAAGTTATTTACGTGCATGTATGGATCCAGTTTTTGGCTTCCCATCTCTTGTGAGATCTAGTTGGTCAACCTCATCTTCTCTATTAGACCAACATGGTGTATCAGTTAGGTGGGAAGATGACGAAACACACGAAGAAGTGCTTCAAGCTAAAAAACTTGCACGAAAACGCGAACATTCAAAAGGTACTTGCAAACTATCGAATTTTTTCAATAATGCTCAATCGAAATCATCCACACCTGATGCATTACAGAGACAACCATTTTTTGTACGAACTGGTCTTGTGCATGTTCAAACTATCACGTAAATTATATGAAATATATTATGTATAATTTTTTTGTATAGATGTTTCATCATATTTCT CTAATAAAATCGAT] [-] EMBL CD075937 [ AAGAACGTGGTAGTGTACCCGAAGGCACTGGTCTTGGTTCTGGCTATCCAGGTGATCCCGTTACTAAAAGTTATTTACGTGCATGTATGGATCCAGTTTTTGGCTTCCCATCTCTTGTGAGATCTAGTTGGTCAACCTCATCTTCTCTATTAGACCAACATGGTGTATCAGTTAGGTGGGAAGATGACGAAACACACGAAGAAGTGCTTCAAGCTAAAAAACTTGCACGAAAACGCGAACATTCAAAAGGTACTTGCAAACTATCGAATTTTTTCAATAATGCTCAATCGAAATCATCCACACCTGATGCATTACAGAGACAACCATTTTTTGTACGAACTGGTCTTGTGCATGTTCAAACTATCACGTAAATTATATGAAATATATTATGTATAATTTTTTTGTATAGATGTTTCATCATATTTCTAATAATAAAATCGAT] [-] EMBL CD117143 [ CTATTAGACCAACATGGTGTATCAGTTAGGTGGGAAGATGACGAAACACACGAAGAAGTGCTTCAAGCTAAAAAACTTGCACGAAAACGCGAACATTCAAAAGGTACTTGCAAACTATCGAATTTTTTCAATAATGCTCAATCGAA ] consensusID : consensus_10351#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 793 fasta sequence [TACGGGCCAANAATTTGGCACGAGGATTTTCGGAACCTTTGTGGCCAGTTGCTTCTGTGTTAGCATATTCATAATAATCGCTTTTTTGCCTTCCTAACAGTCATCTGTCTGTATTTTAGGAGACATCGGACACTGAATTTAGTGATGAACCTTTACTGAAACTTAATGATTCTGCGTCTGGCAGTTCACCAAAAGCTGTGACTAGATATGAAACAAGCTTGTCAGAAGCAGCATCTAATTGCAAGAAAAACTCCAAATTTGACTTCTTGGATCTTTTGACAACATTTACTAAGTCAAATCAATGTATGCTTGGAATTGATGAAGCTGGTAGAGGTCCAGTCCTTGGCCCTATGGGTATATGCATGGTGCCTTGTCACCAATAAGCCAGTTGGAATGGATTAGAAACTATTGGACTTGCTGATTCAAAGACATTAAATGGAAAATCAACGGGGAGAAAACTTCTTAAAAGAAAAGGTGAATAAATGTGATTGGATATCAGCGGTCGTCCATGTCATTAGTCCTGTATACATTACCGAGAAAATGCTAGATAAGTCGAAAACTAGTCTAAATGTTATATCTCATGATTCAGCCATACAGCTTATTCAATCAGTTCTTGACAGTGGAGTAAATTTAGTTGAGGTTTACGTTGATACTGTTGGCAAAGCTGAACATTATGAAACTAAACTGCAAAATCTTTTTCCTCAATTAAAAATACGTGTTGAAAGCAAAGCTGATGATACTTATCCAATTGTGAGTGCTGCTAGTATCTTTGCAAAAGTTACTCGTGATCGAG] [+] EMBL CD079735 [TACGGGCCAANAATTTGGCACGAGGATTTTCGGAACCTTTGTGGCCAGTTGCTTCTGTGTTAGCATATTCATAATAATCGCTTTTTTGCCTTCCTAACAGTCATCTGTCTGTATTTTAGGAGACATCGGACACTGAATTTAGTGATGAACCTTTACTGAAACTTAATGATTCTGCGTCTGGCAGTTCACCAAAAGCTGTGACTAGATATGAAACAAGCTTGTCAGAAGCAGCATCTAATTGCAAGAAAAACTCCAAATTTGACTTCTTGGATCTTTTGACAACATTTACTAAGTCAAATCAATGTATGCTTGGAATTGATGAAGCTGGTAGAGGTCCAGTCCTTGGCCCTATGGGTATATGCATGGTGCCTTGTCACCAATAAGCCAGTTGGAATGGATTAGAAACTATTGGACTTGCTGATTCAAAGACATTAAATGGAAAATCAACGGGGAGAAAACTTCTTAAAAGAAAAGG ] [+] EMBL CD081376 [ gagGGAGACATCGGACACTGAATTTAGTGATGAACCTTTACTGAAACTTAATGATTCTGCGTCTGGCAGTTCACCAAAAGCTGTGACTAGATATGAAACAAGCTTGTCAGAAGCAGCATCTAATTGCAAGAAAAACTCCAAATTTGACTTCTTGGATCTTTTGACAACATTTACTAAGTCAAATCAATGTATGCTTGGAATTGATGAAGCTGGTAGAGGTCCAGTCCTTGGCCCTAT GGTATATGCAT GTGCCTTGTCACCAATAAGCCAGTT GAATGAATTAGAAACTATTGGACTTGCTGATTCAAAGACATTAAAT GAAAATCAAC GGGAG AAACTTCTT AAAGAAATGTTGAATAAATGTGATTGGATATCAGCGGTCGTCCATGTCATTAGTCCTGTATACATTACCGAGAAAATGCTAGATAAGTCGAAAACTAGTCTAAATGTTATATCTCATGATTCAGCCATACAGCTTATTCAATCAGTTCTTGACAGTGGAGTAAATTTAGTTGAGGTTTACGTTGATACTGTTGGCAAAGCTGAACATTATGAAACTAAACTGCAAAATCTTTTTCCTCAATTAAAAATACGTGTTGAAAGCAAAGCTGATGATACTTATCCAATTGTGAGTGCTGCTAGTATCTTTGCAAAAGTTACTCGTGATCGAG] consensusID : consensus_10351#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 646 fasta sequence [CTCGAGGCCAATAATTCGGCACGAGGGAGACATCGGACACTGAATTTAGTGATGAACCTTTACTGAAACTTAATGATTCTGCGTCTGGCAGTTCACCAAAAGCTGTGACTAGATATGAAACAAGCTTGTCAGAAGCAGCATCTAATTGCAAGAAAAACTCCAAATTTGACTTCTTGGATCTTTTGACAACATTTACTAAGTCAAATCAATGTATGCTTGGAATTGATGAAGCTGGTAGAGGTCCAGTCCTTGGCCCTATGGTATATGCATGTGCCTTGTCACCAATAAGCCAGTTGAATGAATTAGAAACTATTGGACTTGCTGTATCATCCATATTTATTAATTTTTAATTATTTAGTTCCACCTTTCTGTTTCACTGAAATACAGATTCAAAGACATTAAATGAAAATCAACGGGAGAAACTTCTTAAAGAAATGTTGAATAAATGTGATTGGATATCAGCGGTCGTCCATGTCATTAGTCCTGTATACATTACCGAGAAAATGCTAGATAAGTCGAAAACTAGTCTAAATGTTATATCTCATGATTCAGCCATACAGCTTATTCAATCAGTTCTTGACAGTGGAGTAAATTTAGTTGAGGTTTACGTTGATACTGTTGGGCAAGCTGAACATTATGAAACTAA] [+] EMBL CD082835 [CTCGAGGCCAATAATTCGGCACGAGGGAGACATCGGACACTGAATTTAGTGATGAACCTTTACTGAAACTTAATGATTCTGCGTCTGGCAGTTCACCAAAAGCTGTGACTAGATATGAAACAAGCTTGTCAGAAGCAGCATCTAATTGCAAGAAAAACTCCAAATTTGACTTCTTGGATCTTTTGACAACATTTACTAAGTCAAATCAATGTATGCTTGGAATTGATGAAGCTGGTAGAGGTCCAGTCCTTGGCCCTATGGTATATGCATGTGCCTTGTCACCAATAAGCCAGTTGAATGAATTAGAAACTATTGGACTTGCTGTATCATCCATATTTATTAATTTTTAATTATTTAGTTCCACCTTTCTGTTTCACTGAAATACAGATTCAAAGACATTAAATGAAAATCAACGGGAGAAACTTCTTAAAGAAATGTTGAATAAATGTGATTGGATATCAGCGGTCGTCCATGTCATTAGTCCTGTATACATTACCGAGAAAATGCTAGATAAGTCGAAAACTAGTCTAAATGTTATATCTCATGATTCAGCCATACAGCTTATTCAATCAGTTCTTGACAGTGGAGTAAATTTAGTTGAGGTTTACGTTGATACTGTTGGGCAAGCTGAACATTATGAAACTAA] consensusID : consensus_10351#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 628 fasta sequence [CCGGGCCAAAAATTCGGCACGAGGCGATTTGTTGCATGGAGACATCGGACACTGAATTTAGTGATGAACCTTTACTGAAACTTAATGATTCTGCGTCTGGCAGTTCACCAAAAGCTGTGACTAGATATGAAACAAGCTTGTCAGAAGCAGCATCTAATTGCAAGAAAAACTCCAAATTTGACTTCTTGGATCTTTTGACAACATTTACTAAGTCAAATCAATGTATGCTTGGAATTGATGAAGCTGGTAGAGGTCCAGTCCTTGGCCCTATGGTATATGCATGTGCCTTGTCACCAATAAGCCAGTTGAATGAATTAGAAACTATTGGACTTGCTGATTCAAAGACATTAAATGAAAATCAACGGGAGAAACTTCTTAAAGAAATGTTGAATAAATGTGATTGGATATCAGCGGTCGTCCATGTCATTAGTCCTGTATACATTACCGAGAAAATGCTAGATAAGTCGAAAACTAGTCTAAATGTTATATCTCATGATTCAGCCATACAGCTTATTCAATCAGTTCTTGACAGTGGAGTAAATTTAGTTGAGGTTTACGTTGATACTGTTGGCNAAGCTGAACATTATGAAACTAAACTGNCAAATCTTTTTCCTCAATTAAAAATACG] [+] EMBL CD083064 [CCGGGCCAAAAATTCGGCACGAGGCGATTTGTTGCATGGAGACATCGGACACTGAATTTAGTGATGAACCTTTACTGAAACTTAATGATTCTGCGTCTGGCAGTTCACCAAAAGCTGTGACTAGATATGAAACAAGCTTGTCAGAAGCAGCATCTAATTGCAAGAAAAACTCCAAATTTGACTTCTTGGATCTTTTGACAACATTTACTAAGTCAAATCAATGTATGCTTGGAATTGATGAAGCTGGTAGAGGTCCAGTCCTTGGCCCTATGGTATATGCATGTGCCTTGTCACCAATAAGCCAGTTGAATGAATTAGAAACTATTGGACTTGCTGATTCAAAGACATTAAATGAAAATCAACGGGAGAAACTTCTTAAAGAAATGTTGAATAAATGTGATTGGATATCAGCGGTCGTCCATGTCATTAGTCCTGTATACATTACCGAGAAAATGCTAGATAAGTCGAAAACTAGTCTAAATGTTATATCTCATGATTCAGCCATACAGCTTATTCAATCAGTTCTTGACAGTGGAGTAAATTTAGTTGAGGTTTACGTTGATACTGTTGGCNAAGCTGAACATTATGAAACTAAACTGNCAAATCTTTTTCCTCAATTAAAAATACG] consensusID : consensus_10351#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence [TTCTATAGTGTTGTCTTATGCTTAAATATTGTTGCACCTCTATATAATGCGAATCTGACTTTCATCTACCACCACTCGAATTACTCATTTATTTGGCTTAGAATAAATTGGTACTCGTTATTTAGACATTATATGAATAATTATAGCGTGGAACTAAAAAAGGCGTTTTTTGATAGTCTAAATAATATTTCAATGAATTCAGGTTACTCGTGATCGAGTTCTTCAAATGTGGCCTAAGGAAGAACGTGGTAGTGTACCCGAAGGCACTGGTCTTGGTTCTGGCTATCCAGGTGATCCCGTTACTAAAAGTTATTTACGTGCATGTATGGATCCAGTTTTTGGCTTCCCATCTCTTGTGAGATCTAGTTGGTCAACCTCATCTTCTCTATTAGACCAACATGGTGTATCAGTTAGGTGGGAAGATGACG] [-] EMBL CD165434 [TTCTATAGTGTTGTCTTATGCTTAAATATTGTTGCACCTCTATATAATGCGAATCTGACTTTCATCTACCACCACTCGAATTACTCATTTATTTGGCTTAGAATAAATTGGTACTCGTTATTTAGACATTATATGAATAATTATAGCGTGGAACTAAAAAAGGCGTTTTTTGATAGTCTAAATAATATTTCAATGAATTCAGGTTACTCGTGATCGAGTTCTTCAAATGTGGCCTAAGGAAGAACGTGGTAGTGTACCCGAAGGCACTGGTCTTGGTTCTGGCTATCCAGGTGATCCCGTTACTAAAAGTTATTTACGTGCATGTATGGATCCAGTTTTTGGCTTCCCATCTCTTGTGAGATCTAGTTGGTCAACCTCATCTTCTCTATTAGACCAACATGGTGTATCAGTTAGGTGGGAAGATGACG] consensusID : consensus_10351#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 297 fasta sequence [TCGCAGGCAAGAATTCGTCACGAGGCTTTTTCAAAGCTGTTGGGCGATTAATAAAAGTACTTCGTCATGATGTATATTATTGAGAAATGGGAACGTCCACGACAAAGAACGTATACATACGAAACAAGAGCAACGAAAAATGCCTTCTTTGGTACCACCTACAATATTAGTTTAAAGTATTTGTATTTTGTTTTAATAGGTTTGCTGTTATTCTGAAATTCATGTGATTTTTTTTCGAAATTTTTACTCAGATCCCGTTACTAAAAGTTATTTACGTGCATGTATGGATCCAGTTTT] [+] EMBL CD078143 [TCGCAGGCAAGAATTCGTCACGAGGCTTTTTCAAAGCTGTTGGGCGATTAATAAAAGTACTTCGTCATGATGTATATTATTGAGAAATGGGAACGTCCACGACAAAGAACGTATACATACGAAACAAGAGCAACGAAAAATGCCTTCTTTGGTACCACCTACAATATTAGTTTAAAGTATTTGTATTTTGTTTTAATAGGTTTGCTGTTATTCTGAAATTCATGTGATTTTTTTTCGAAATTTTTACTCAGATCCCGTTACTAAAAGTTATTTACGTGCATGTATGGATCCAGTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10351#1 TACGGGCCAANAATTTGGCACGAGGATTTTCGGAACCTTTGTGGCCAGTTGCTTCTGTGT 60 consensus_10351#3 ------------------------------------------------------------ consensus_10351#2 ------------------------------------------------------------ consensus_10351#0 ------------------------------------------------------------ consensus_10351#4 ------------------------------------------------------------ consensus_10351#5 ------------------------------------------------------------ consensus_10351#1 TAGCATATTCATAATAATCGCTTTTTTGCCTTCCTAACAGTCATCTGTCTGTATTTTAGG 120 consensus_10351#3 -----------------CCGGGCCAAAAATTCGGCACGAGGCGATTTGTTGCAT----GG 39 consensus_10351#2 -----------------------------CTCGAGGCCAATAATTCGGCACGAG----GG 27 consensus_10351#0 --------------------------------------------GAGGCCANAATTTGGC 16 consensus_10351#4 ------------------------------------------------------------ consensus_10351#5 ------------------------------------------------------------ consensus_10351#1 AGACATCGGACACTGAATTTAGTGATGAACCTTTACTGAAACTTAATGATTCTGCGTCTG 180 consensus_10351#3 AGACATCGGACACTGAATTTAGTGATGAACCTTTACTGAAACTTAATGATTCTGCGTCTG 99 consensus_10351#2 AGACATCGGACACTGAATTTAGTGATGAACCTTTACTGAAACTTAATGATTCTGCGTCTG 87 consensus_10351#0 ACGAGGCGCACACTGAATTTAGTGATGAACCTTTACTGAAACTTAATGATTCTGCGTCTG 76 consensus_10351#4 ------------------------------------------------------------ consensus_10351#5 ------------------------------------------------------------ consensus_10351#1 GCAGTTCACCAAAAGCTGTGACTAGATATGAAACAAGCTTGTCAGAAGCAGCATCTAATT 240 consensus_10351#3 GCAGTTCACCAAAAGCTGTGACTAGATATGAAACAAGCTTGTCAGAAGCAGCATCTAATT 159 consensus_10351#2 GCAGTTCACCAAAAGCTGTGACTAGATATGAAACAAGCTTGTCAGAAGCAGCATCTAATT 147 consensus_10351#0 GCAGTTCACCAAAAGCTGTGACTAGATATGAAACAAGCTTGTCAGAAGCAGCATCTAATT 136 consensus_10351#4 ----------------------------------------TTCTATAGTGTTGTCTTATG 20 consensus_10351#5 -----------------------------------------------------TCGCA-G 6 ** * consensus_10351#1 GCAAGAAAAACTCCAAATTTGACTTCTTGGATCTTTTGACAACATTTACTA--AGTCAAA 298 consensus_10351#3 GCAAGAAAAACTCCAAATTTGACTTCTTGGATCTTTTGACAACATTTACTA--AGTCAAA 217 consensus_10351#2 GCAAGAAAAACTCCAAATTTGACTTCTTGGATCTTTTGACAACATTTACTA--AGTCAAA 205 consensus_10351#0 GCAAGAAAAACTCCAAATTTGACTTCTTGGATCTTTTGACAACATTTACTA--AGTCAAA 194 consensus_10351#4 CTTAAATATTGTTGCACCTCTATATAATGCGAATCTGACTTTCATCTACCACCACTCGAA 80 consensus_10351#5 GCAAGAATTCGTCACGAGGCTTTTTCAAAGCTGTTGGGCGATTAATAAAAGTACTTCGTC 66 * * * * * * * ** consensus_10351#1 TCAAT-GTATGCTTGGAATTGATGAAGCTGGTAGAGGTCCAGTCCTTGGCCCTATGGGTA 357 consensus_10351#3 TCAAT-GTATGCTTGGAATTGATGAAGCTGGTAGAGGTCCAGTCCTTGGCCCTATGG-TA 275 consensus_10351#2 TCAAT-GTATGCTTGGAATTGATGAAGCTGGTAGAGGTCCAGTCCTTGGCCCTATGG-TA 263 consensus_10351#0 TCAAT-GTATGCTTGGAATTGATGAAGCTGGTAGAGGTCCAGTCCTTGGCCCTATGG-TA 252 consensus_10351#4 TTACTCATTTATTTGGCTTAGAATAAATTGGTA----CTCGTTATTTAGACAT-----TA 131 consensus_10351#5 ATGAT-GTATATT----ATTGAG-AAATGGGAAC--GTCCACGACAAAGAAC-------G 111 * * * * * ** ** ** * * * consensus_10351#1 TATGCATGGTGCCTTGTCACCAATAAGCCAGTTGGAATGGATTAGAAACTATTGGACTTG 417 consensus_10351#3 TATGCATG-TGCCTTGTCACCAATAAGCCAGTTG-AATGAATTAGAAACTATTGGACTTG 333 consensus_10351#2 TATGCATG-TGCCTTGTCACCAATAAGCCAGTTG-AATGAATTAGAAACTATTGGACTTG 321 consensus_10351#0 TATGCATG-TGCCTTGTCACCAATAAGCCAGTTG-AATGAATTAGAAACTATTGGACTTG 310 consensus_10351#4 TATGAATA----ATTATAGC----------GTGGAACTAAAAAAGGCGTTTTTTGATAGT 177 consensus_10351#5 TATACATA------CGAAAC---------AAGAGCAACGAAAAATGCCTTCTTTGGTA-- 154 *** ** * * * * * * ** * consensus_10351#1 CTG--------------------------------------------------------- 420 consensus_10351#3 CTG--------------------------------------------------------- 336 consensus_10351#2 CTGTATCATCCATATTTATTAATTTTTAATTATTTAGTTCCACCTTTCTGTTTCACTGAA 381 consensus_10351#0 CTG--------------------------------------------------------- 313 consensus_10351#4 CTA--------------------------------------------------------- 180 consensus_10351#5 CCA--------------------------------------------------------- 157 * consensus_10351#1 ------ATTCAAAGACATTAAATGGAAAATCAACGGGGAGAAAACTTCTTAAAAGAAAAG 474 consensus_10351#3 ------ATTCAAAGACATTAAATG-AAAATCAACGGGAG--AAACTTCTTAAA-GAAATG 386 consensus_10351#2 ATACAGATTCAAAGACATTAAATG-AAAATCAACGGGAG--AAACTTCTTAAA-GAAATG 437 consensus_10351#0 ------ATTCAAAGACATTAAATG-AAAATCAACGGGAG--AAACTTCTTAAA-GAAATG 363 consensus_10351#4 -----AATAATATTTCAATGAATT-CAGGTTACTCGTGATCGAGTTCTTCAAATGTGGCC 234 consensus_10351#5 --------CCTACAATATTAGTTT--AAAGTATTTGTATT----TTGTTTTAA------- 196 * * * * * * * * * ** consensus_10351#1 GT-GAATAAATGTGATTGGATATCAGCGGTCGTCCATGTCATTAGTCCTGTATACATTAC 533 consensus_10351#3 TT-GAATAAATGTGATTGGATATCAGCGGTCGTCCATGTCATTAGTCCTGTATACATTAC 445 consensus_10351#2 TT-GAATAAATGTGATTGGATATCAGCGGTCGTCCATGTCATTAGTCCTGTATACATTAC 496 consensus_10351#0 TT-GAATAAATGTGATTGGATATCAGCGGTCGTCCATGTCATTAGTCCTGTATACATTAC 422 consensus_10351#4 TAAGGAAGAACGTGGTAGTGTACCCGAAGGCAC---TGGTCTTGGTTCTG-----GCTAT 286 consensus_10351#5 ------TAGGTTTGCTGTTATTCTGAAATTCAT--GTGATTTTTTTTCGAAAT-TTTTAC 247 ** * * * ** ** * * ** consensus_10351#1 CGAGAAAATGCTAGATAAGTCGAAAACTAGTCTAAATGT---TATATCTCATGATTCAGC 590 consensus_10351#3 CGAGAAAATGCTAGATAAGTCGAAAACTAGTCTAAATGT---TATATCTCATGATTCAGC 502 consensus_10351#2 CGAGAAAATGCTAGATAAGTCGAAAACTAGTCTAAATGT---TATATCTCATGATTCAGC 553 consensus_10351#0 CGAGAAAATGCTAGATAAGTCGAAAACTAGTCTAAATGT---TATATCTCATGATTCAGC 479 consensus_10351#4 CCAGGTGAT-CCCGTTA---CTAAAAGTTATTTACGTGCATGTATGGATCCAGTTTTTGG 342 consensus_10351#5 TCAGAT----CCCGTTA---CTAAAAGTTATTTACGTGCATGTATGGATCCAGTTTT--- 297 ** * * ** * **** * * ** ** *** ** * ** consensus_10351#1 CATACAGCTTATTCAATCAGTTCTTGACAGTGGAGTAAATTTAGTTGAGGTTTACGTTGA 650 consensus_10351#3 CATACAGCTTATTCAATCAGTTCTTGACAGTGGAGTAAATTTAGTTGAGGTTTACGTTGA 562 consensus_10351#2 CATACAGCTTATTCAATCAGTTCTTGACAGTGGAGTAAATTTAGTTGAGGTTTACGTTGA 613 consensus_10351#0 CATACAGCTTATTCAATCAGTTCTTGACAGTGGAGTAAATTTAGTTGAGGTTTACGTTGA 539 consensus_10351#4 CTTCCCATCTCTT--GTGAGATCTAGTTGGTCAACCTCATCTTCTCTA---TTAGACCAA 397 consensus_10351#5 ------------------------------------------------------------ consensus_10351#1 TACTGTTGGCAAAGCTGAACATTATGAAACTAAACTGCAAAATCTTTTTCCTCAATTAAA 710 consensus_10351#3 TACTGTTGGCNAAGCTGAACATTATGAAACTAAACTGNCAAATCTTTTTCCTCAATTAAA 622 consensus_10351#2 TACTGTTGGGCAAGCTGAACATTATGAAACTAA--------------------------- 646 consensus_10351#0 TACTGTTGGCAAAGCTGAACATTATGAAACTAAACTGCAAAATCTTTTTCCTCAATTAAA 599 consensus_10351#4 CA-TGGTGTATCAGTTAGGTGGGAAGATGACG---------------------------- 428 consensus_10351#5 ------------------------------------------------------------ consensus_10351#1 AATACGTGTTGAAAGCAAAGCTGATGATACTTATCCAATTGTGAGTGCTGCTAGTATCTT 770 consensus_10351#3 AATACG------------------------------------------------------ 628 consensus_10351#2 ------------------------------------------------------------ consensus_10351#0 AATACGTGTTGAAAGCAAAGCTGATGATACTTATCCAATTGTGAGTGCTGCTAGTATCTT 659 consensus_10351#4 ------------------------------------------------------------ consensus_10351#5 ------------------------------------------------------------ consensus_10351#1 TGCAAAAGTTACTCGTGATCGAG------------------------------------- 793 consensus_10351#3 ------------------------------------------------------------ consensus_10351#2 ------------------------------------------------------------ consensus_10351#0 TGCAAAAGTTACTCGTGATCGAGTTCTTCAAATGTGGCCTAAAGAAGAACGTGGTAGTGT 719 consensus_10351#4 ------------------------------------------------------------ consensus_10351#5 ------------------------------------------------------------ consensus_10351#1 ------------------------------------------------------------ consensus_10351#3 ------------------------------------------------------------ consensus_10351#2 ------------------------------------------------------------ consensus_10351#0 ACCCGAAGGCACTGGTCTTGGTTCTGGCTATCCAGGTGATCCCGTTACTAAAAGTTATTT 779 consensus_10351#4 ------------------------------------------------------------ consensus_10351#5 ------------------------------------------------------------ consensus_10351#1 ------------------------------------------------------------ consensus_10351#3 ------------------------------------------------------------ consensus_10351#2 ------------------------------------------------------------ consensus_10351#0 ACGTGCATGTATGGATCCAGTTTTTGGCTTCCCATCTCTTGTGAGATCTAGTTGGTCAAC 839 consensus_10351#4 ------------------------------------------------------------ consensus_10351#5 ------------------------------------------------------------ consensus_10351#1 ------------------------------------------------------------ consensus_10351#3 ------------------------------------------------------------ consensus_10351#2 ------------------------------------------------------------ consensus_10351#0 CTCATCTTCTCTATTAGACCAACATGGTGTATCAGTTAGGTGGGAAGATGACGAAACACA 899 consensus_10351#4 ------------------------------------------------------------ consensus_10351#5 ------------------------------------------------------------ consensus_10351#1 ------------------------------------------------------------ consensus_10351#3 ------------------------------------------------------------ consensus_10351#2 ------------------------------------------------------------ consensus_10351#0 CGAAGAAGTGCTTCAAGCTAAAAAACTTGCACGAAAACGCGAACATTCAAAAGGTACTTG 959 consensus_10351#4 ------------------------------------------------------------ consensus_10351#5 ------------------------------------------------------------ consensus_10351#1 ------------------------------------------------------------ consensus_10351#3 ------------------------------------------------------------ consensus_10351#2 ------------------------------------------------------------ consensus_10351#0 CAAACTATCGAATTTTTTCAATAATGCTCAATCGAAATCATCCACACCTGATGCATTACA 1019 consensus_10351#4 ------------------------------------------------------------ consensus_10351#5 ------------------------------------------------------------ consensus_10351#1 ------------------------------------------------------------ consensus_10351#3 ------------------------------------------------------------ consensus_10351#2 ------------------------------------------------------------ consensus_10351#0 GAGACAACCATTTTTTGTACGAACTGGTCTTGTGCATGTTCAAACTATCACGTAAATTAT 1079 consensus_10351#4 ------------------------------------------------------------ consensus_10351#5 ------------------------------------------------------------ consensus_10351#1 ------------------------------------------------------------ consensus_10351#3 ------------------------------------------------------------ consensus_10351#2 ------------------------------------------------------------ consensus_10351#0 ATGAAATATATTATGTATAATTTTTTTGTATAGATGTTTCATCATATTTCTCTAATAAAA 1139 consensus_10351#4 ------------------------------------------------------------ consensus_10351#5 ------------------------------------------------------------ consensus_10351#1 ----- consensus_10351#3 ----- consensus_10351#2 ----- consensus_10351#0 TCGAT 1144 consensus_10351#4 ----- consensus_10351#5 ----- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||