These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10364#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 918 fasta sequence [TCGGTACGAGGATTGAACTTGAAGAGATACGCGAACAGTATCATTTACATTCACGTGTAAACCTATTAGGAAGTTTACAGCCTCATGAAGTTCGACCTCTTTTAATACAAGGTGATATCTTTTTAAATACTTCTCTTACTGAGGCGTTTTGTATAGCCATTCTTGAAGCAGTCTCATGTGGCTTAATGGTTATCAGTACAGCTGTTGGGGGACTTCCGGAAGTTCTACCCGAGCATTTTATTAGACTTGCACCAGCAAACGCTTCAGAATTAGCCACTATTGTTGCAGATTCCATTATTCAAGTTCGGCAGCAACGTGAAGATTCGAAACTTACAGCTCATGAACAAAAAGCTATGGATAATTTGACTTCAAACAAGCTGGACATATGTACCTCACCTCCAAATCCTCTTTGTCGATTTTCATTGATCGCCGATTCATCTACACATTTTGATGGTACTGAATTTAATTGTAATTCACTTACTGATCATTGTTGGCATATGCATAAATGGATTCGTAGTATGTATTGTTGGCCTCTAGTTGCTAAACGTACGGAAAAAGTCTATTCTGCTGCTATGTCTAAACCACCTGTTTCACTACAAGACAGAATCTCAAGATTATACCAACTTGGTCCACTTACTGGGAAAATGACATGTTTTGCCG-CTATTTTACACTGGCTTCTTCTTC-ATTTATTTCGTGGCTTAAACCTG-ACAGATGATCGATATAATGCCATCACTTGAANCACCTATAGAATATTTCAGTGATAGCGAATGTGAGGATTTTTNCTG-TGATTCACAC-AATAATATTC-AATGATGAATACAGNNTTC-ATATCACGTTTATTNNTGA-TGNATNGAACT-AT-ACTGNATAAATCT-CTGGGCATAA-TTNTA-TTATTNCGT--AAACG-NATCATATTTCTTTAAAAGA] [+] EMBL CD082176 [TCGGTACGAGGATTGAACTTGAAGAGATACGCGAACAGTATCATTTACATTCACGTGTAAACCTATTAGGAAGTTTACAGCCTCATGAAGTTCGACCTCTTTTAATACAAGGTGATATCTTTTTAAATACTTCTCTTACTGAGGCGTTTTGTATAGCCATTCTTGAAGCAGTCTCATGTGGCTTAATGGTTATCAGTACAGCTGTTGGGGGACTTCCGGAAGTTCTACCCGAGCATTTTATTAGACTTGCACCAGCAAACGCTTCAGAATTAGCCACTATTGTTGCAGATTCCATTATTCAAGTTCGGCAGCAACGTGAAGATTCGAAACTTACAGCTCATGAACAAAAAGCTATGGATAATTTGACTTCAAACAAGCTGGACATATGTACCTCACCTCCAAATCCTCTTTGTCGATTTTCATTGATCGCCGATTCATCTACACATTTTGATGGTACTGAATTTAATTGTAATTCACTTACTGATCATTGTTGGCATATGCATAAATGGATTCGTAGTATGTATTGTTGGCCTCTAGTTGCTAAACGTACGGAAAAAGTCTATTCTGCTGCTATGTCTAAACCACCTGTTTCACTANCAGACAGAATCTCAAGATTATACCAACTTGGTCCACTTACTGNGAAAATGACATGTTNTGCCG CTATTNTACACTGGCTTCTTCTTC ATNTATTTCGTGGCTTAAACCTG ACAGATGATCGATATAATGCCATCACTTGAANCACCTATAGAATATTTCAGTGATAGCGAATGTGAGGATTTTTNCTG TGATTCACAC AATAATATTC AATGATGAATACAGNNTTC ATATCACGTTTATTNNTGA TGNATNGAACT AT ACTGNATAAATCT CTGGGCATAA TTNTA TTATTNCGT AAACG NATCATATTTCTTTAA ] [+] EMBL CD147492 [ CAGATTCCATTATTCAAGTTCGGCAGCAACGTGAAGATTCGAAACTTACAGCTCATGAACAAAAAGCTATGGATAATTTGACTTCAAACAAGCTGGACATATGTACCTCACCTCCAAATCCTCTTTGTCGATTTTCATTGATCGCCGATTCATCTACACATTTTGATGGTACTGAATTTAATTGTAATTCACTTACTGATCATTGTTGGCATATGCATAAATGGATTCGTAGTATGTATTGTTGGCCTCTAGTTGCTAAACGTACGGAAAAAGTCTATTCTGCTGCTATGTCTAAACCACCTGTTTCACTACAAGACAGAATCTCAAGATTATACCAACTTGGTCCACTTACTGGGAAAATGACATGTTTTGCCG C ] [+] EMBL CD147685 [ CAGATTCCATTATTCAAGTTCGGCAGCAACGTGAAGATTCGAAACTTACAGCTCATGAACAAAAAGCTATGGATAATTTGACTTCAAACAAGCTGGACATATGTACCTCACCTCCAAATCCTCTTTGTCGATTTTCATTGATCGCCGATTCATCTACACATTTTGACGGTACTGAATTTAATTGTAATTCACTTACTGATCATTGTTGGCATATGCATAAATGGATTCGTAGTATGTATTGTTGGCCTCTAGTTGCTAAACGTACGGAAAAAGTCTATTCTGCTGCTATGTCTAAACCACCTGTTTCACTACAAGACAGAATCTCAAGATTATACCAACTTGGTCCACTTACTGGGAAAATGACATGTTTTGCCG C ] [+] EMBL CD147340 [ CAGATTCCATTATTCAAGTTCGGCAGCAACGTGAAGATTCGAAACTTACAGCTCATGAACAAAAAGCTATGGATAATTTGACTTCAAACAAGCTGGACATATGTACCTCACCTCCAAATCCTCTTTGTCGATTTTCATTGATCGCCGATTCATCTACACATTTTGATGGTACTGAATTTAATTGTAATTCACTTACTGATCATTGTTGGCATATGCATAAATGGATTCGTAGTATGTATCGTTGGCCTCTAGTTGCTAAACGTACGGAAAAAGTCTATTCTGCTGCTACGTCTAAACCACCTGTTTCACTACAAGACAGAATCTCAAGATTATACCAACTTGGTCCACTTACTGGGAAAATGACATGTTTTGCCG C ] [-] EMBL CD147846 [ AGATTCCATTATTCAAGTTCGGCAGCAACGTGAAGATTCGAAACTTACAGCTCATGAACAAAAAGCTATGGATAATTTGACTTCAAACAAGCTGGACATATGTACCTCACCTCCAAATCCTCTTTGTCGATTTTCATTGATCGCTGATTCATCTACACATTTTGATGGTACTGAATTTAATTGTAATTCACTTACTGATCATTGTTGGCATATGCATAAATGGATTCGTAGTATGTATTGTTGGCCTCTAGTTGCTAAACGTACGGAAAAAGTCTATTCTGCTGCTATGTCTAAACCACCTGTTTCACTACAAGACAGAATCTCAAGATTATACCAACTTGGTCCACTTATTGGGAAAATGGCATGTTTTGCCG CT ] [-] EMBL CD147919 [ AGATTCCATTATTCAAGTTCGGCAGCAACGTGAAGATTCGAAACTTACAGCTCATGAACAAAAAGCTATGGATAATTTGACTTCAAACAAGCTGGACATATGTACCTCACCTCCAAATCCTCTTTGTCGATTTTCATTGATCGCCGATTCATCTACACATTTTGATGGTACTGAATTTAATTGTAATTCACTTACTGATCATTGCTGGCATATGCATAAATGGATTCGTAGTATGTATTGTTGGCCTCTAGTTGCTAAACGTACGGAAAAAGTCTATTCTGCTGCTATGTCT AACCACCTGTTTCACTACAAGACAGAATCTCAAGATTATACCAACTTGGTCCACTTACTGGGAAAATGACATGTTTTGCCG CT ] [-] EMBL CD072159 [ TTGACTTCAAACAAGCTGGACATATGTACCTCACCTCCAAATCCTCTTTGTCGATTTTCATTGATCGCCGATTCATCTACACATTTTGATGGTACTGAATTTAATTGTAATTCACTTACTGATCATTGTTGGCATATGCATAAATGGATTCGTAGTATGTATTGTTGGCCTCTAGTTGCTAAACGTACGGAAAAAGTCTATTCTGCTGCTATGTCTAAACCACCTGTTTCACTACAAGACAGAATCTCAAGATTATACCAACTTGGTCCACTTACTGGGAAAATGACATGTTTTGCCGAATATTTTACACTGGCTTCTTCTTC Aat ] [-] EMBL CD075792 [ CAAATCCTCTTTGTCGATTTTCATTGATCGCCGATTCATCTACACATTTTGATGGTACTGAATTTAATTGTAATTCACTTACTGATCATTGTTGGCATATGCATAAATGGATTCGTAGTATGTATTGTTGGCCTCTAGTTGCTAAACGTACGGAAAAAGTCTATTCTGCTGCTATGTCTAAACCACCTGTTTCACTACAAGACAGAATCTCAAGATTATACCAACTTGGTCCACTTACTGGGAAAATGACATGTTTTGCCG CTATTTTACACTGGCTTCTTCTTCAATTTATTTCGTGGCTTAGACCTGAACAGATGATCGATATAATGCCATCACTTGAAACACCTATAGAATATTTCAGTGATAGCGAATGTGAGGATTTTT CTGTTGATTCACACAAATAATATTCAAATGATGAATACAGTTTTCAATATCACGTTTATT TTGATTGTATTGAACTAATAACTGTATAATTCTCCTGTGCATAATTTTTATTTATT CGTTAAAACGTAATCATTATTCTTTTAAAGA] consensusID : consensus_10364#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 391 fasta sequence [AGATTCCATTATTCAAGTTCGGCAGCAACGTGAAGATTCGAAACTTACAG-CTCATGAACAAAAAGCTATGGATAATTTGACTTCAAACAAGGTGATTTTTATACATCTGGACATATGTACCTCACCTCCAAATCCTCTTTGTCGATTTTCATTGATCGCCGATTCATCTACACATTTTGATGGTACTGAATTTAATTGTAATTCACTTACTGATCATTGTTGGCATATGCATAAATGGATTCGTAGTATGTATTGTTGGCCTCTAGTTGCTAAACGTACGGAAAAAGTCTATTCTGCTGCTATGTCTAAACCACCTGTTTCACTACAAGACAGAATCTCAAGATTATACCAACTTGGTCCACTTACTGGGAAAATGACATGTTTTGCCGCT] [-] EMBL CD097397 [AGATTCCATTATTCAAGTTCGGCAGCAACGTGAAGATTCGAAACTTACAG CTCATGAACAAAAAGCTATGGATAATTTGACTTCAAACAAGGTGATTTTTATACATCTGGACATATGTACCTCACCTCCAAATCCTCTTTGTCGATTTTCATTGATCGCCGATTCATCTACACATTTTGATGGTACTGAATTTAATTGTAATTCACTTACTGATCATTGTTGGCATATGCATAAATGGATTCGTAGTATGTATTGTTGGCCTCTAGTTGCTAAACGTACGGAAAAAGTCTATTCTGCTGCTATGTCTAAACCACCTGTTTCACTACAAGACAGAATCTCAAGATTATACCAACTTGGTCCACTTACTGGGAAAATGACATGTTTTGCCGCT] [-] EMBL CD097398 [AGATTCCATTATTCAAGTTCGGCAGCAACGTGAAGATTCGAAACTTACAG CTCATGAACAAAAAGCTATGGATAATTTGACTTCAAACAAGGTGATTTTTATACATCTGGACATATGTACCTCACCTCCAAATCCTCTTTGTCGATTTTCATTGATCGCCGATTCATCTACACATTTTGATGGTACTGAATTTAATTGTAATTCACTTACTGATCATTGTTGGCATATGCATAAATGGATTCGTAGTATGTATTGTTGGCCTCTAGTTGCTAAACGTACGGAAAAAGTCTATTCTGCTGCTATGTCTAAACCACCTGTTTCACTACAAGACAGAATCTCAAGATTATACCAACTTGGTCCACTTACTGGGAAAATGACATGTTTTGCCGCT] [-] EMBL CD147313 [AGATTCCATTATTCAAGTTCGGCAGCAACGTGAAGATTCGAAACTTACAG CTCATGAACAAAAAGCTATGGATAATTTGACTTCAAACAAGGTGATTTTTATACATCTGGACATATGTACCTCACCTCCAAATCCTCTTTGTCGATTTTCATTGATCGCCGATTCATCTACACATTTTGATGGTACTGAATTTAATTGTAATTCACTTACTGATCATTGTTGGCATATGCATAAATGGATTCGTAGTATGTATTGTTGGCCTCTAGTTGCTAAACGTACGGAAAAAGTCTATTCTGCTGCTATGTCTAAACCACCTGTTTCACTACAAGACAGAATCTCAAGATTATACCAACTTGGTCCACTTACTGGGAAAATGACATGTTTTGCCGCT] [+] EMBL CD112044 [ AACTTACAGTCTCATGAACAAAAAGCTATGGATTATTTGACTTCAAACAAGGTGATTTTTATACATCTGGACATATGTACCTCACCTCCAAATCCTCTTTGTCGATTTTCATTGATCGCCGATTCATCTACACATTTTGATGGTACTGAATTTAATTGTAATTCACTTACTGATCATTGTTGGCATATGCATAAATGGATTCGTAGTATGTATTGTTGGCCTCTAGTTGCTAAACGTACGGAAAAAGTCTATTCTGCTGCTATGTCTAAACCAGCTGTTTCACTACAAGACAGAATCTCAAGATTATACCAACTTGGTCCACTTACTGGGAAA ] [+] EMBL CD155495 [ CTTTGTCGATTTTCATCGATCGCCGATTCATCTACACATTTTGACGGTACTGAATTTAATTGTAATTCACTTACTGATCATTGTTGGCATATGCATAAATGGATTCGTAGTATGTATCGTTGGCCTCTACTTGCTA ] consensusID : consensus_10364#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 232 fasta sequence [TCTGTTTCCAGAATTAAGATTTCTTATAGGTGGTGATGGACCTAAAAGACTTGAACTTGAAGAGATACGCGAACAGTATCAGTTACATTCACGTGTAAACTTATTAGGAAGTTTACAGCCTCATGAAGTTCGACCTCTTTTAATACAAGGTGATATCTTTTTAAATACTTCTCTTACTGAGGCGTTTTGTATAGCCATTCTTGAAGCAGTCTCATGTGGCTTAATGGGTATC] [+] EMBL CD078084 [TCTGTTTCCAGAATTAAGATTTCTTATAGGTGGTGATGGACCTAAAAGACTTGAACTTGAAGAGATACGCGAACAGTATCAGTTACATTCACGTGTAAACTTATTAGGAAGTTTACAGCCTCATGAAGTTCGACCTCTTTTAATACAAGGTGATATCTTTTTAAATACTTCTCTTACTGAGGCGTTTTGTATAGCCATTCTTGAAGCAGTCTCATGTGGCTTAATGGGTATC] consensusID : consensus_10364#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 208 fasta sequence [GGCTCGTGGGNAATTCGATTGCACTGAGGCGTACTAGGAAGATTCGAAACTTACAGCTCATGAACAAAAAGCTATGGATAATTTGACTTCAAACAAGATTATACCAACTTGGTCCACTTACTGGGAAAATGACATGTTTTGCCGCTATTTTACACTGGCTTCTTCTTCAATTTATTTCGTGGCTTAGACCTGAACAGATGATCGATAT] [+] EMBL CD191226 [GGCTCGTGGGNAATTCGATTGCACTGAGGCGTACTAGGAAGATTCGAAACTTACAGCTCATGAACAAAAAGCTATGGATAATTTGACTTCAAACAAGATTATACCAACTTGGTCCACTTACTGGGAAAATGACATGTTTTGCCGCTATTTTACACTGGCTTCTTCTTCAATTTATTTCGTGGCTTAGACCTGAACAGATGATCGATAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10364#1 ------------------------------------------------------------ consensus_10364#3 ------------------------------------------------------------ consensus_10364#0 TCGGTACGAGGATTGAACTTGAAGAGATACGCGAACAGTATCATTTACATTCACGTGTAA 60 consensus_10364#2 ------------------------------------------------------------ consensus_10364#1 ------------------------------------------------------------ consensus_10364#3 ------------------------------------------------------------ consensus_10364#0 ACCTATTAGGAAGTTTACAGCCTCATGAAGTTCGACCTCTTTTAATACAAGGTGATATCT 120 consensus_10364#2 ------------------------------------------------------------ consensus_10364#1 ------------------------------------------------------------ consensus_10364#3 ------------------------------------------------------------ consensus_10364#0 TTTTAAATACTTCTCTTACTGAGGCGTTTTGTATAGCCATTCTTGAAGCAGTCTCATGTG 180 consensus_10364#2 ------------------------------------------------------------ consensus_10364#1 ------------------------------------------------------------ consensus_10364#3 ------------------------------------------------------------ consensus_10364#0 GCTTAATGGTTATCAGTACAGCTGTTGGGGGACTTCCGGAAGTTCTACCCGAGCATTTTA 240 consensus_10364#2 ------------------------------------------------------------ consensus_10364#1 ----------------------------------------------AGATTCCATTATTC 14 consensus_10364#3 ---------------------------------------GGCTCGTGGGNAATTCGATTG 21 consensus_10364#0 TTAGACTTGCACCAGCAAACGCTTCAGAATTAGCCACTATTGTTGCAGATTCCATTATTC 300 consensus_10364#2 --------------------------------------TCTGTTTCCAGAATTAAGATTT 22 *** consensus_10364#1 AAGTTCGGCAGCAACGTG-----AAGATTCGAAACTTACAG--CTCATGAACAAAA--AG 65 consensus_10364#3 CACTGAGGC-GTACTAGG-----AAGATTCGAAACTTACAG--CTCATGAACAAAA--AG 71 consensus_10364#0 AAGTTCGGCAGCAACGTG-----AAGATTCGAAACTTACAG--CTCATGAACAAAA--AG 351 consensus_10364#2 CTTATAGGTGGTGATGGACCTAAAAGACTTGAACTTGAAGAGATACGCGAACAGTATCAG 82 ** * **** * *** * * * ***** * ** consensus_10364#1 CTATGGATA-ATTTGACTTCA--AACAAGGTGATT--TTTATACATCTGGACATATGTAC 120 consensus_10364#3 CTATGGATA-ATTTGACTTCA--AACAAGATTATA--C-----CAACTTGGTCCACTTAC 121 consensus_10364#0 CTATGGATA-ATTTGACTTCA--AACAAG-----------------CTGGACATATGTAC 391 consensus_10364#2 TTACATTCACGTGTAAACTTATTAGGAAGTTTACAGCCTCATGAAGTTCGACCTCTTTTA 142 ** * * * * * * * *** * * * consensus_10364#1 CTCACCTCCAAATCCTCTTTGTCGATTTTCATTGATC-GCCGATTCATCTACACATTTTG 179 consensus_10364#3 TGGGAAAATGACATGT-TTTGCCGCTATTTTACACTG-GCTTCTTCTTCAATTTATTTCG 179 consensus_10364#0 CTCACCTCCAAATCCTCTTTGTCGATTTTCATTGATC-GCCGATTCATCTACACATTTTG 450 consensus_10364#2 ATACAAGGTGATATCTTTTTAAATACTTCTCTTACTGAGGCGTTTTGTATAGCCATTCT- 201 * * *** * * * ** * * *** consensus_10364#1 ATGGTACTGAATTTAATTG--TAATTCACTTACTGATCATTGTTGGCATATGCATAAATG 237 consensus_10364#3 -TGGCTTAGACCTGAACAGA-TGATCGATAT----------------------------- 208 consensus_10364#0 ATGGTACTGAATTTAATTG--TAATTCACTTACTGATCATTGTTGGCATATGCATAAATG 508 consensus_10364#2 -TGAAGCAGTCTCATGTGGCTTAATGGGTATC---------------------------- 232 ** * * * ** * consensus_10364#1 GATTCGTAGTATGTATTGTTGGCCTCTAGTTGCTAAACGTACGGAAAAAGTCTATTCTGC 297 consensus_10364#3 ------------------------------------------------------------ consensus_10364#0 GATTCGTAGTATGTATTGTTGGCCTCTAGTTGCTAAACGTACGGAAAAAGTCTATTCTGC 568 consensus_10364#2 ------------------------------------------------------------ consensus_10364#1 TGCTATGTCTAAACCACCTGTTTCACTACAAGACAGAATCTCAAGATTATACCAACTTGG 357 consensus_10364#3 ------------------------------------------------------------ consensus_10364#0 TGCTATGTCTAAACCACCTGTTTCACTACAAGACAGAATCTCAAGATTATACCAACTTGG 628 consensus_10364#2 ------------------------------------------------------------ consensus_10364#1 TCCACTTACTGGGAAAATGACATGTTTTGCCGCT-------------------------- 391 consensus_10364#3 ------------------------------------------------------------ consensus_10364#0 TCCACTTACTGGGAAAATGACATGTTTTGCCGCTATTTTACACTGGCTTCTTCTTCATTT 688 consensus_10364#2 ------------------------------------------------------------ consensus_10364#1 ------------------------------------------------------------ consensus_10364#3 ------------------------------------------------------------ consensus_10364#0 ATTTCGTGGCTTAAACCTGACAGATGATCGATATAATGCCATCACTTGAANCACCTATAG 748 consensus_10364#2 ------------------------------------------------------------ consensus_10364#1 ------------------------------------------------------------ consensus_10364#3 ------------------------------------------------------------ consensus_10364#0 AATATTTCAGTGATAGCGAATGTGAGGATTTTTNCTGTGATTCACACAATAATATTCAAT 808 consensus_10364#2 ------------------------------------------------------------ consensus_10364#1 ------------------------------------------------------------ consensus_10364#3 ------------------------------------------------------------ consensus_10364#0 GATGAATACAGNNTTCATATCACGTTTATTNNTGATGNATNGAACTATACTGNATAAATC 868 consensus_10364#2 ------------------------------------------------------------ consensus_10364#1 -------------------------------------------------- consensus_10364#3 -------------------------------------------------- consensus_10364#0 TCTGGGCATAATTNTATTATTNCGTAAACGNATCATATTTCTTTAAAAGA 918 consensus_10364#2 -------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||