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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10377#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 671 fasta sequence
[TTGTCCTGGCAACATGAGCATGGGTTAACAATAAACAATTAGATAGATTGATCAATATACAACATGAATATCAAGTTTAACTAATCAGTTTGTATACAATTTGAGATCATGAGAGAAAGCTGGTTTCTACCTACTACAGCAACAAGAAGTTCCAGATAAAAGTGTCGTGGTATTCCACAACTAGTACTAGTAACATGAAAATGATCCAGCAAGAATGAGATCACATTGAATAGACAATAAGAAGAAGGTATAATCACATATGAACAATCAAATTTCCATTTTGACCAGATCAAGCACTCAAAATCAATTTGCAAAGAAGTACAATGATGTAATGAAATGATCCAAACATACCAAATATATATA-TGATAGAGTCTATGTGTTTACAAAGGTGATGATCATGAGAGATTCACATAGATACATTATTGGAATCAAATGATATCACCTTATTATTGCACATTACGCCTTCAATACTTATAATAATGATAATGATGGTGATATAGATGTGATTGTCTGTACTGATCCCGAATCATCAACTTGTCACCATAGTTTCAACTTCATTGTTGATTATTGGATTAATCCCTTCTTTTCATTCATCATTCACAGTTTATCCATTCTATAGAAGCCAACCTGGATATTTCACCATTCTAAACACCACATAGTAGTGATGTTTA]
[+] EMBL CD133102 [TTGTCCTGGCAACATGAGCATGGGTTAACAATATACAATTAGATAGATTGATCAATATACAACATGAATATCAAGTTTAACTAATCAGTTTGTATACAATTTGAGATCATGAGAGAAAGCTGGTTTCTACCAACTACAGCAACAAGAAGTTCCAGATAAAAGTGTCGTGGTATTCCACAACTAGTACTAGTAACATGAAAATGATCCAGCAAGAATGAGATCACATTGAATAGACAATAAGAAGAAGGTATAATCACATATGAACAATCAAATTTCCATTTTGACCAGATCAAGCACTCAAAATCAATTTGCAAAGAAGTACAATGATGTAATGAAATGATCCAAACATACCAAATATATATA TGA ]
[+] EMBL CD132743 [ CATGGGTTAACAATAAACAATTAGATAGATTGATCAATATACAACATGAATATCAAGTTTAACTAATCAGTTTGTATACAATTTGAGATCATGAGAGAAAGCTAGTTTCTACCTACTACAGCAACAAGAAGTTCCAGATAAAAGTGTCGTGGTATTCCACAACTAGTACTAGTAACATGAAAGTGATCCAGCAAGAATGAGATCACATTGAATAGACAATAAGAAGAAGGTATAATCACATATGAACAATCAAATTTCCATTTTGACCAGATCAAGCACTCAAAATCAATTTGCAAAGAAGTACAATGATGTAATGAAATGACCCAAACATACCAAATATATATA TGATAGAGTCTATGTGTTTACAAAGGTGATGATCATGAGAGATT ]
[+] EMBL CD169127 [ AAACAATTAGATAGATTGATCAATATACAACATGAATATCAAGTTTAACTAATCAGTTTGTATACAATTTGAGATCATGAGAGAAAGCTGGTTTCTACCTACTACAGCAACAAGAAGTTCCAGATAAAAGTGTCGTGGTATTCCACAACTAGTACTAGTAACATGAAAATGATCCAGCAAGAATGAGATCACATTGAATAGACAATAAGAAGAAGGTATAATCACATATGAACAATCAAATTTCCATTTTGACCAGATCAAGCACTCAAAATCAATTTGCAAAGAAGTACAATGATGTAATGAAATGATCCAAACATACCAAATATATATA TGATAGAGTCTATGTGTTTACAAAGGTGATGATCATGAGAGATTCACATAGATACATTATTGGAATCAAATGATATCACCTTATTATTGCACATTACGCCTTCAATACTTATAATAATGATAATGATGGTGATATAGATGTGATTGTCTG ]
[+] EMBL CD161308 [ AATTAGATAGATTGATCAATATACAACATGAATATCAAGTTTAACTAATCAGTTTGTATACAATTTGAGATCATGAGAGAAAGCTGGTTTCTACCTACTACAGCAACAAGAAGTTCCAGATAAAAGTGTCGTGGTATTCCACAACTAGTACTAGTAACATGAAAATGATCCAGCAAGAATGAGATCACATTGAATAGACAATAAGAAGAAGGTATAATCACATATGAACAATCAAATTTCCATTTTGACCAGATCAAGCACTCAAAATCAATTTGCAAAGAAGTACAATGATGTAATGAAATGATCCAAACATACCAAATATATATA TGATAGAGTCTATGTGTTTACAAAGGTGATGATCATGAGAGATTCACATAGATACATTATTGGAATCAAATGATATCACCTTATTATTGCACATTACGCCTTCAATACTTATAATAATGATAATGATGGTGATATAGATGTGATTGTCTGTACTGATCCCGAATCATCAACTTGTCACCTTAGTTTCAACTTCATTGTTGATTATTGGATTAATCCCTTCTTTTCATTCATCATTCACAGTTTATCCATTCTATAGAAGCCAACCTGGATATTTCACCATTCTAAACACCACATAGTAGTGATGTTTA]
[+] EMBL CD161135 [ AATTAGATAGATTGATCAATATACAACATGAATATCAAGTTTAACTAATCAGTTTGTATACAATTTGAGATCATGAGAGAAAGCTGGTTTCTACCTACTACAGCAACAAGAAGTTCCAGATAAAAGTGTCGTGGTATTCCACAACTAGTACTAGTAACATGAAAATGATCCAGCAAGAATGAGATCACATTGAATAGACAATAAGAAGAAGGTATAATCACATATGAACAATCAAATTTCCATTTTGACCAGATCAAGCACTCAAAATCAATTTGCAAAGAAGTACAATGATGTAATGAAATGATCCAAACATACCAAATATATATA TGATAGAGTCTATGTGTTTACAAAGGTGATGATCATGAGAGATTCACATAGATACATTATTGGAATCAAATGATATCACCTTATTATTGCACATTACGCCTTCAATACTTATAATAATGATAATGATGGTGATATAGATGTGATTGTCTGTACTGATCCCGAATCATCAACTTGTCACCATAGTTTCAACTTCATTGTTGATTATTGGATTAATCCCTTCTTTTCATTCATCATTCACAGTTTATCCATTCTATAGAAGCCAACCTGGATATTTCA ]
[+] EMBL CD161007 [ AATTAGATAGATTGATCAATATACAACATGAATATCAAGTTTAACTAATCAGTTTGTATACAATTTGAGATCATGAGAGAAAGCTGGTTTCTACCTACTACAGCAACAAGAAGTTCCAGATAAAAGTGTCGTGGTATTCCACAACTAGTACTAGTAACATGAAAATGATCCAGCAAGAATGAGATCACATTGAATAGACAATAAGAAGAAGGTATAATCACATATGAACAATCAAATTTCCATTTTGACCAGATCAAGCACTCAAAATCAATTTGCAAAGAAGTACAATGATGTAATGAAATGATCCAAACATACCAAATATATATA TGATAGAGTCTATGTGTTTACAAAGGTGATGATCATGAGAGATTCACATAGATACATTATTGGAATCAAATGATATCACCTTATTATTGCACATTACGCCTTCAATACTTATAATAATGATAATGATGGTGATATAGATGTGATTGTCTGTACTGATCCCGAATCATCAACTTGTCACCATAGTTTCAACTTCATTGTTGATTATTGGATTAATCCCTTCTTTTCATTCATCATTCACAGTTTATCCATTCTATAGAAGCCAAC ]
[-] EMBL BG931965 [ TCATGAGAGAAAGCTGGTTTCTACCTACTACAGCAACAAGAAGTTCCAGATAAAAGTGTCGTGGTATTCCACAACTAGTACTAGTAACATGAAAATGATCCAGCAAGAATGAGATCACATTGAATAGACAATAAGAAGAAGGTATAATCACATATGAACAATCAAATTTCCATTTTGAC ]
[-] EMBL CD141348 [ AAGTGTCGTGGTATTCCACAACTAGTACTAGTAACATGAAAATGATCCAGCAAGAATGAGATCACATTGAATAGACAATAAGAAGAAGGTATACTCACATATGAACAATCAAATTTCCATTTTGACCAGATCAAGCACTCAAAATCAATTTGCAAAGAAGTACAATGATGTAATGAAATGATCCAAACATACCAAATATGTATA TGATAGAGTCTATGTGTTT ]
[-] EMBL CD141560 [ AAGTGTCGTGGTATTCCACAACTAGTACTAGTAACATGAAAATGATCCAGCAAGAATGAGATCACATTGAATAGACAATAAGAAGAAGGTATACTCACATATGAACAATCAAATTTCCATTTTGACCAGATCAAGCACTCAAAATCAATTTGCAAAGAAGTACAATGATGTAATGAAATGATCCAAACATACCAAATATATATA TGATAGAGTCTATGTGTTTAC ]
[-] EMBL AI977478 [ TGTCGTGGTATTCCACAACTAGTACTAGTAACATCAAAATGATCCAGCAAGAATGAGATCACATTGAATAGTCAATAAGAAGAAGGTATAATCACATATGAACAATCAAATTTCCATTTTGACCAGATCAAGCACTCAAAATCAATTTGCAAATAAGTACAATGATGTAATGAAATGATCCAAACATACCAAATATATATA TGATAGAGTCTATGTGTTTACAAAGGTGATGATCATGAGAGATTCACATAGATACATTATTGGAATCAAATGATATCACCTTATTATTGCACATTACGCCTTCAATACTTATAATAATGATAATGATGGTGATATAGATGTGATTGTCTGTACTGATCCCGAATCATCAACTTGTCACCATAGTTTCAACTTCATTGTTGATTATTAGATTAATCCCTTCTTTTCATTCATCATTCACAGTTTATCCATTCTATAGAAGCCAACCTGGATATTTCACCATTCTAAACACCACATAGTAG ]
[-] EMBL SMAA14102 [ ATATATATATTGATAGAGTCTATGTGTTTACAAAGG TGATCCTGAGAGATTCACATAGATACATTATTGGAATCAAATGATATCACCTTATTATTGCACATTACGCCTTCAATACTTATAATAATGATAATGATGGTGATATAGATGTGATTGTCTGTACTGATCC ]
[-] EMBL CD200321 [ TATATA TGATAGAGTCTATGTGTTTACAAAGGTGATGATCATGAGAGATTCACATAGATACATTATTGGAATCAAATGATATCACCTTATTATTGCACATTACGCCTTCAATACTTATAATAATGATAATGATGGTGATATAGATGTGATTGTCTGTACTGATCCCGAATCATCAACTTGTCACCATAGTTTCAACTTCATTGTTGATTATTAGATTAATCCCTTCTTTTCATTCATCATTCACAGTTTATCCATT ]
[-] EMBL AA791335 [ gttcctgtCATTATTGG ATCAAATGATATCACCTTATTATTGCACATTACGCCTTCAATACTTATAATAATGATAATGATGGTGATATAGATGTGATTGTCTGTACTGATCCCGAATCATCAACTTGTCACCATAGTTTCAACTTCATTGTTGATTATTAGATTAATCCCTTCTTTTCATTCATCATTCACAGTTTATCCATTCTATAGAAGCCAACCTGGATATTTCAC ]
consensusID : consensus_10377#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 480 fasta sequence
[ATACTTTATTGATATAAAAACAACAAAACCAAAAGAATGAGCCATTTTTAAAAAAAAACATTAAATCATTCAAGTAATTGTCATGGCAACATGAGCATGGGTTAACAATAACCAATTGGATAGATTGACCAATATACAACATGAATATCAAGTTTAACTAATCAGTTTGTATACAATTTGAGATCATGGGAGAAAGCTGGTTTCTACCTACTACAGCAACAAGAAGTTCCAGGATAAAAGTGTCGTGGTATTCCACAACTAGTACTAGTAACATGAAATGATCCAGCAAGATTGAGATCACATTGAATAGCCAATAGGAGGAGGGTATAATCACATTATGGACCATCAAATTTCCATTTTGCCCAGGACCAGGCACTTCAAAATCAATTTGCAAGAGTACAATGTTGTATTGAATGTCCCAACATCCCATTTTATATGGTGGGGCCCATGGTTACAAGGTGATGCCAGGGGGTTCACTGG]
[+] EMBL SMAA69899 [ATACTTTATTGATATAAAAACAACAAAACCAAAAGAATGAGCCATTTTTAAAAAAAAACATTAAATCATTCAAGTAATTGTCATGGCAACATGAGCATGGGTTAACAATAACCAATTGGATAGATTGACCAATATACAACATGAATATCAAGTTTAACTAATCAGTTTGTATACAATTTGAGATCATGGGAGAAAGCTGGTTTCTACCTACTACAGCAACAAGAAGTTCCAGGATAAAAGTGTCGTGGTATTCCACAACTAGTACTAGTAACATGAAATGATCCAGCAAGATTGAGATCACATTGAATAGCCAATAGGAGGAGGGTATAATCACATTATGGACCATCAAATTTCCATTTTGCCCAGGACCAGGCACTTCAAAATCAATTTGCAAGAGTACAATGTTGTATTGAATGTCCCAACATCCCATTTTATATGGTGGGGCCCATGGTTACAAGGTGATGCCAGGGGGTTCACTGG]
consensusID : consensus_10377#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 280 fasta sequence
[CAGATCCAGCACTCCACANCNATTTNCNAAGAAGNACCAATGATGTAATGGAATGATNCCCNCATACCACANATATATATGATAGAGTCTATGTGTTTACCAANGGTGATGATCATGAGAGATTCACATAGATACATTATTGGAANCAAATGATATCACCGTATTATTGCACATCACGCCTTCAATACTTATAATAATGATAATNGTGGTGATATAGATGTGATTGTCTGTNCTGATCCCGAATCATCAACTTGTCACCATAGTNTCAACTTCATTGTTG]
[-] EMBL SM6262 [CAGATCCAGCACTCCACANCNATTTNCNAAGAAGNACCAATGATGTAATGGAATGATNCCCNCATACCACANATATATATGATAGAGTCTATGTGTTTACCAANGGTGATGATCATGAGAGATTCACATAGATACATTATTGGAANCAAATGATATCACCGTATTATTGCACATCACGCCTTCAATACTTATAATAATGATAATNGTGGTGATATAGATGTGATTGTCTGTNCTGATCCCGAATCATCAACTTGTCACCATAGTNTCAACTTCATTGTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10377#0 TTGTCCTGGCAACATGAGCATGGGTTAACAATAAACAATTAGATAGATTGATCAATATAC 60
consensus_10377#2 ------------------------------------------------------------
consensus_10377#1 ------------------------------------------------------------
consensus_10377#0 AACATGAATATCAAGTTTAACTAATCAGTTTGTATACAATTTGAGATCATGAGAGAAAGC 120
consensus_10377#2 ------------------------------------------------------------
consensus_10377#1 ------------------------------------------------------------
consensus_10377#0 TGGTTTCTACCTACTACAGCAACAAGAAGTTCCAGATAAAAGTGTCGTGGTATTCCACAA 180
consensus_10377#2 ------------------------------------------------------------
consensus_10377#1 ------------------------------------------------------------
consensus_10377#0 CTAGTACTAGTAACATGAAAATGATCCAGCAAGAATGAGATCACATTGAATAGACAATAA 240
consensus_10377#2 ------------------------------------------------------------
consensus_10377#1 ----------------------------------------ATACTTTATTGATATAAAAA 20
consensus_10377#0 GAAGAAGGTATAATCACATATGAACAATCAAATTTCCATTTTGACCAGATCAAGCACTC- 299
consensus_10377#2 ---------------------------------------------CAGATCCAGCACTC- 14
consensus_10377#1 CAACAAAACCAAAAGAATGAGCCATTTTTAAAAAAAAACATTAAATCATTCAAGTAATTG 80
** ** * *
consensus_10377#0 -AAAATCAATTTGCAAAGAAGT-AC-AATGATGTAATGAAATGATC--CAAACATACCAA 354
consensus_10377#2 -CACANCNATTTNCNAAGAAGN-ACCAATGATGTAATGGAATGATN--CCCNCATACCAC 70
consensus_10377#1 TCATGGCAACATGAGCATGGGTTAACAATAACCAATTGGATAGATTGACCAATATACAAC 140
* * * * * * * *** * * ** * *** * **** *
consensus_10377#0 ATATATATATGATAGAGTCTATGTGTTTAC-AAAGGTG-ATGATCATGAGAGA---TTCA 409
consensus_10377#2 ANATATATATGATAGAGTCTATGTGTTTACCAANGGTG-ATGATCATGAGAGA---TTCA 126
consensus_10377#1 ATGAATATCAAGTTTAACTAATCAGTTTGTATACAATTTGAGATCATGGGAGAAAGCTGG 200
* **** * * ** **** * * ******* **** *
consensus_10377#0 CATAGATACATTATTGGAATCAAATGAT-----ATCACCTTATTATTGCACATTACGCCT 464
consensus_10377#2 CATAGATACATTATTGGAANCAAATGAT-----ATCACCGTATTATTGCACATCACGCCT 181
consensus_10377#1 TTTCTACCTACTACAGCAACAAGAAGTTCCAGGATAAAAGTGTCGTGGTATTCCACAACT 260
* * * ** * ** * * * * ** * * * * * * ** **
consensus_10377#0 TCAATACTTATAATA----ATGAT--AATGATGGTGATAT-AGATGTGATTGTCTGTACT 517
consensus_10377#2 TCAATACTTATAATA----ATGAT--AATNGTGGTGATAT-AGATGTGATTGTCTGTNCT 234
consensus_10377#1 --AGTACTAGTAACATGAAATGATCCAGCAAGATTGAGATCACATTGAATAGCCAATAGG 318
* **** *** * ***** * *** ** * ** ** * * *
consensus_10377#0 GATCCCGAATCATCAACTTGTC-ACCAT--AGTTTCAACTTCATTGTTGATTATTGGATT 574
consensus_10377#2 GATCCCGAATCATCAACTTGTC-ACCAT--AGTNTCAACTTCATTGTTG----------- 280
consensus_10377#1 AGGAGGGTATAATCACATTATGGACCATCAAATTTCCATTTTGCCCAGGACCAGGCACTT 378
* ** **** ** * ***** * * ** * ** *
consensus_10377#0 AATCCCTTCTTTTCATTCATCATTCACAGTTTATCCATTCTATAGAAGCCAACCTGGATA 634
consensus_10377#2 ------------------------------------------------------------
consensus_10377#1 CAAAATCAATTTGCAAGAGTACAATGTTGTATTGAATGTCCCAACATCCCATTTTATATG 438
consensus_10377#0 TTTCACCATTCTAAACACCACATAGTAGTGATGTTTA----- 671
consensus_10377#2 ------------------------------------------
consensus_10377#1 GTGGGGCCCATGGTTACAAGGTGATGCCAGGGGGTTCACTGG 480
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||