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Schistosoma mansoni
cluster # 10392 cluster # 10392       Sequences # 16       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10392#0 length = 1605 sequences # 11  
consensus_10392#1 length = 641 sequences # 1  
consensus_10392#2 length = 559 sequences # 2  
consensus_10392#3 length = 404 sequences # 2  

consensusID : consensus_10392#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 1605
fasta sequence
                              [GAAGTATGGCAGAAGAGACTGTAGATAAAGCGATAAAGGTATGTGATCTTAAACCAACTGGTCCATGTCGTACCAAAGGTCTTCTTTTAGAGGGTGCTCATGGTTGGTCACCAAATCTATTTATACAAATTGTTCAAGAATATGGTATGGATGTGGATGTGGCACGTCATTTAACAGGGATTTATGGTGATAAAGCTATCACTATAGCTAATATGTCCAAACTAACTGGTTTAAGATGGCCAATATTAGGTAAAAAATTACATCCTGAATTTCCTTTTATTGAAGCTGAAGTGGAATATGCATGCCGAGAATATGCTTGTCATGTTGTTGATTTTCTTGCTCGTCGTACTCGTTTAGCATTTTTGAATGTACGAGCTGCGGAAGAAGCTTTACCAAGAATTGTTGATTTAATGGGTGAACATTTAAAATGGAATAGTGAAAGAAAAAAGCAAGAAATGCGAGAGGCAGAGAACTTCTTAAAATCTGAAATGGGTCTTGGTCTACGTGTTATGGAAGGTGTTCGTATGGATTTGACTATTGATGAAATTAGTCATCTTTTACAAAGTTTCCGTAAACTTGATCATGACACTAAAGGATATGTTTCATTGGATGATTTACGCAAATTTTGTACTGAATCTGGTGAA-TATGTTAGTGAAGAAGTACTACAGTCTACTTTGAATACAATGGATATTAATAAGAATGGACAAGTTGACATGTCAGAATTTTTACAATTTATGAGTGCAATAAAATCTGGCGTTGTTGTCAACTCACCTTTAAAG-AAGTATTAAGTCGTACTCGAATTCCTGTTTATAGAAGTGGTGGTGGTGTTTAAAAGAAAAACTATTATTCTATTTAGAAACTTTCGCAATGATAATAGCAATAATAAGGATAAGTGTCCCTTATCTTTACCTTTTTTTAAAAGTTAACTTATTTCGCTCTGAGTTTTGTTCACTCTTAGTGTTATGTGTCTACATGTGGCTGCCGATTGTGC-TTCTTTGAAGATGTTGATGAATCGACTACAAGAATAGTGCTATTATCATTAGTGTTATTCATCAGTTTAATAATATCACAGATTTGTAGTTAGATTGTCTTTTTTTTTCATTTTTTTTATTACTCTTATCTA-GATAAGTTGAAATTGCTGTAAGATGTGTGCATGTATGAGTGACTTACTAATTTTAGTAATTGTGCATTTTTAAAGTTATAGATAAGAAAAACGTACTTGTTTTTTGGCTTTATTTTAGTTAAATTGTCATTATTAAATAGAATACAAAAGTATTCTTCATTCAACACTTGGAAAACTGTTTTCTATCTCATAATTGTATTTTTCATCGTTATTATCATTAACTTTAGCTATATATCACTTCCAAAACAGAATCATTTGTCCATCTACTACTGTCTATCACAGCAACTATTAGAAATTTTCACTTTTTAATACTTTTCCTTGTTAAGAAATATGTTCAATGTGTATCGATTTAGTTCAC-GAGTTTACTTTCTTCTGGTTAATTTCTGATTATATATTGCATTCTTTTTGTCAACCATGTTCAGGATTGTTTAAAAAATATTGTTTGAGTATCCATGCCTTGTGATAAAGTCAATACATTTATA]

[+] EMBL CD117975             [GAAGTATGGCAGAAGAGACTGTAGATAAAGCGATAAAGGTATGTGATCTTAAACCAACTGGTCCATGTCGTACCAAAGGTCTTCTTTTAGAGGGTGCTCATGGTTGGTCACCAAATCTATTTATACAAATTGTTCAAGAATATGGTATGGATGTGGATGTGGCACGTCATTTAACAGGGATTTATGGTGATAAAGCTATCACTATAGCTAATATGTCCAAACTAACTGGTTTAAGATGGCCAATATTAGGTAAAAAATTACATCCTGAATTTCCTTTTATTGAAGCCGAAGTGGAATATGCATGCCGAGAATATGCTTGTCATGTTGTTGATTTTCTTGCTCGTCGTACTCGTTTAGCATTTTTGAATGTACGAGCTGCGGAAGAAGCTTTACCAAGAATTGTTGATTTAATGGGTGAACATTTAAAATGGAATAGTGAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD164619             [                            AGCGATAAAGGTATGTGATCTTAAACCAACTGGTCCATGTCGTACCAAAGGTCTTCTTTTAGAGGGTGCTCATGGTTGGTCACCAAATCTATTTATACAAATTGTTCAAGAATATGGTATGGATGTGGATGTGGCACGTCATTTAACAGGGATTTATGGTGATAAAGCTATCACTATAGCTAATATGTCCAAACTAACTGGTTTAAGATGGCCAATATTAGGTAAAAAATTACATCCTGAATTTCCTTTTATTGAAGCTGAAGTGGAATATGCATGCCGAGAATATGCTTGTCATGTTGTTGATTTTCTTGCTCGTCGTACTCGTTTAGCATTTTTGAATGTACGAGCTGCGGAAGAAGCTTTACCAAGAATTGTTGATTTAATGGGTGAACATTTAAAATGGAATAGTGAAAGAAAAAAGCAAGAAATGCGAGAGGCAGAGAACTTCTTAAAATCTGAAATGGGTCTTGGTCTACGTGTTATGGAAGGTGTTCGTATGGATTTGACTATTGATGAAATTAGTCATCTTTTACAAAGTTTCCGTAAACCTGATCATGACACTAAAGGATATGTTTCATTGGATGATTTACGCAAATTTTGTACTGAATCTGGTGAANTATG TAGTGAAGAAGTACTACAGTCTACTNTGAATACAATGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD082873             [                                                                                                                                                                                                                                       TAAGATGGCCAATATTAGGT AAAAATT CATCCTGAATTTCCTTTTATTGAAGCTGAAGTGGAATATGCATGCCGAGAATATGCTTGTCATGTTGTTGATTTTCTTGCTCGTCGTACTCGTTTAGCATTTTTGAATGTACGAGCTGCGGAAGAAGCTTTACCAAGAATTGTTGATTTAATGGGTGAACATTTAAAATGGAATAGTGAAAGAAAAAAGCAAGAAATGCGAGAGGCAGAGAACTTCTTAAAATCTGAAATGGGTCTTGGTCTACGTGTTATGGAAGGTGTTCGTATGGATTTGACTATTGATGAAATTAGTCATCTTTTACAAAGTTTCCGTAAACTTGATCATGACACTAAAGGATATGTTTCATTGGATGATTTACGCAAATTTTGTACTGAATCTGGTGAA TATGTTAGTGAAGAAGTACTACAGTCTACTTTGAATACAATGGATATTAATAAGAATGGACAAGTTGACATGTCAGAATTTTTACAATTTATGAGTGCAATANAATCTGGCGTTGTTGTCAACTCACCTTNTAAG A                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CD094102             [                                                                                                                                                                                                                                                                                                                                                            CTCGTTTAGCATTTTTGAATGTACGAGCTGCGGAAGAAGCTTTACCAAGAATTGTTGATTTAGTGGGTGAACATTTAAAATGGAATAGTGAAAGAAAAAAGCAAGAAATGCGAGAGGCAGAGAACTTCTTAAAATCTGAAATGGGTCTTGGTCTACGTGTTATGGAAGGTGTTCGTATGGATTTGACTATTGATGAGATTAGTCATCTTTTACAAAGTTTCCGTAAACTTGATCATGACACTAAAGGATATGTCTCATTGGATGATTTACGCAAATTTTGTACTGAATCTGGTGAA T                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD191011             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TTATGGAAGGTGTTCGTATGGATTTGACTATTGATGAAATTAGTCATCTTTTACAAAGCTTCCGTAAACTTGATCATGACACTAAAGGATATGTTTCATTGGATGATTTACGCAAATTTTGTACTGAATCTGGTGAA TATGTTAGTGAAGAAGTACTACAGTCTACTTTGAATACAATGGATATTAATAAGAATGGACAAGTTGACATGTCAGAATTTTTACAATTTATGAGTGCAATAAAATCTGGCGTTGTTGTCAACTCACCTTTAAAG AAGTATTAAGTCGTACTCGAATTCCTGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD152947             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TGTTCGTATGGATTTGACTATTGATGAAATTAGTCATCTTTTACAAAGTTTCCGTAAACTTGATCATGACACTAAAGGATATGTTTCATTGGATGATTTACGCAAATTTTGTACTGAATCTGGTGAA TATGTTAGTGAAGAAGTACTACAGTCTACTTTGAATACAACGGATATTAATAAGAATGGACAAGTTGACATGTCAGAATTTTTACAATTTATGAGTGCAATAAAATCTGGCGTTGTTGTCAACTCACCTTTAAAGAAAGTATTAAGTCGTACTCGAATTCCTGTTTATAGAAGTGGTGGTGGTGTTTAAAAGAAAAACTATTATTCTATTTAGAAACTTTCGCAATGATAATAGCAATAATAAGGATAAGTGTCCCTTATCTTTACCTTTTTTTAAAAGTTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD078838             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GGTGAA TATGTTAGTGAAGAAGTACTACAGTCTACTTTGAATACAATGGATATTAATAAGAATGGACAAGTTGACATGTCAGAATTTTTACAATTTATGAGTGCAATAAAATCTGGCGTTGTTGTCAACTCACCTTTAAAGAAAGTATTAAGTCGTACTCGAATTCCTGTTTATAGAAGTGGTGGTGGTGTTTAAAAGAAAAACTATTATTCTATTTAGAAACTTTCGCAATGATAATAGCAATAATAAGGATAAGTGTCCCTTATCTTTACCTTTTTTTAAAAGTTAACTTATTTCGCTCTGAGTTTTGTTCACTCTTAGTGTTATGTGTCTACATGTGGCTGCCGATTGTGC TTCTTTGAAGATGTTGATGAATCGACTACAAGAATAGTGCTATTATCATTAGTGTTATTCATCAGTTTAATAATATCACAGATTTGTAGTTAGATTGTCTTTTTTTTTCATTTTTTTTATTACTCTTATCTA GATAAGTTGAAATTGCTGTAAGATGTGTGCATGTATGAGTGACTTACTAATTNTAGTAATTGTGCATTNTTAAAGTTATAGATAAGAAAAgc                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD195834             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CATGTGGCTGCCGA TGTGCTTTCTTTGAAGATGTTGATGAATCGACTACAAGAATAGTGCTATTATCATTAGTGTTATTCATCAGTTTAATAATATCACAGATTTGTAGTTAGATTGTCTTTTTTTTTCATTTTTTTTATTACTCTTATCTA GATAAGTTGAAATTGCTGTAAGATGTGTGCATGTATGAGTGACTTACTAATTTTAGTAATTGTGCATTTTTAAAGTTATAGATAAGAAAAACGTACTTGTTTTTTGGCTTTATTTTAGTTAAATTGTCATTATTAAATAGAATACAAAAGTATTCTTC                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD076567             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CTTTGAAGATGTTGATGAATCGACTACAAGAATAGTGCTATTATCATTAGTGTTATTCATCAGTTTAATAATATCACAGATTTGTAGTTAGATTGTCTTTTTTTTTCATTTTTTTTATTACTCTTATCTA GATAAGTTGAAATTGCTGTAAGATGTGTGCATGTATGAGTGACTTACTAATTTTAGTAATTGTGCATTTTTAAAGTTATAGATAAGAAAAACGTACTTGTTTTTTGGCTTTATTTTAGTTAAATTGTCATTATTAAATAGAATACAAAAGTATTCTTCATTCAACACTTGGAAAACTGTTTTCTATCTCATAATTGTATTTTTCATCGTTATTATCATTAACTTTAGCTATATATCACTTCCAAAACAGAATCATTTGTCCATCTACTACTGTCTATCACAGCAACTATTAGAAATTTTCACTTTTTAATACTTTTCCTTGTTAAGAAATATGTTCAATGTGTATCGATTTAGTTCAC GAGTTTACTTTCTTCTGGTTAATTTCTGATTATATATTGCATTCTTTTTGTCAACCATGTTCAGGATTGTTTAAAAAATATTGTTTGAGTATCCATGCCTTGTGATAAAGTCAATACATTTATA]
[-] EMBL CD076459             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TTTTTTTCATTTTTTTTATTACTC TATCTANGATAAGTTGAAATTGCTGTAAGATGTGTGCATGTATGAGTGACTTACTAATTTTAGTAATTGTGCATTTTTAAAGTTATAGATAAGAAAAACGTACTTGTTTTTTGGCTTTATTTTAGTTAAATTGTCATTATTAAATAGAATACAAAAGTATTCTTCATTCAACACTTGGAAAACTGTTTTCTATCTCATAATTGTATTTTTCATCGTTATTATCATTAACTTTAGCTATATATCACTTCCAAAACAGAATCATTTGTCCATCTACTACTGTCTATCACAGCAACTATTAGAAATTTTCACTTTTTAATACTTTTCCTTGTTAAGAAATATGTTCAATGTGTATCGATTTAGTTCAC GAGTTTACTTTCTTCTGGTTAATTTCTGATTATATATTGCATTCTTTTTGTCAACCATGTTCAGGATTGTTTAAAAAATATTGTTTGAGTATCCATGCCTTGTGATAAAGTCAATACATTTATA]
[-] EMBL AW186584             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        tGCTATATATGACTTCC AAACTGAATCATTT TCCATCTACTACTGTCTATCACAGCAACTA TAGACATTTTCAC TTTTCATAC TATCCTTGTTACG AATATGTTCCATGTGTATCGATTTAGTTCACTGAGTTTACTTTCTTGTGGTTAATTTCTGATTATATATTGCATTCTTTTTGTCAACCATGTTCAGGATTGTTTAAAAAATATTGTTTGAGTATCCATGCCTTGTGATAAAGTCAATACATTTATA]


>consensus_10392#0 GAAGTATGGCAGAAGAGACTGTAGATAAAGCGATAAAGGTATGTGATCTTAAACCAACTG GTCCATGTCGTACCAAAGGTCTTCTTTTAGAGGGTGCTCATGGTTGGTCACCAAATCTAT TTATACAAATTGTTCAAGAATATGGTATGGATGTGGATGTGGCACGTCATTTAACAGGGA TTTATGGTGATAAAGCTATCACTATAGCTAATATGTCCAAACTAACTGGTTTAAGATGGC CAATATTAGGTAAAAAATTACATCCTGAATTTCCTTTTATTGAAGCTGAAGTGGAATATG CATGCCGAGAATATGCTTGTCATGTTGTTGATTTTCTTGCTCGTCGTACTCGTTTAGCAT TTTTGAATGTACGAGCTGCGGAAGAAGCTTTACCAAGAATTGTTGATTTAATGGGTGAAC ATTTAAAATGGAATAGTGAAAGAAAAAAGCAAGAAATGCGAGAGGCAGAGAACTTCTTAA AATCTGAAATGGGTCTTGGTCTACGTGTTATGGAAGGTGTTCGTATGGATTTGACTATTG ATGAAATTAGTCATCTTTTACAAAGTTTCCGTAAACTTGATCATGACACTAAAGGATATG TTTCATTGGATGATTTACGCAAATTTTGTACTGAATCTGGTGAATATGTTAGTGAAGAAG TACTACAGTCTACTTTGAATACAATGGATATTAATAAGAATGGACAAGTTGACATGTCAG AATTTTTACAATTTATGAGTGCAATAAAATCTGGCGTTGTTGTCAACTCACCTTTAAAGA AGTATTAAGTCGTACTCGAATTCCTGTTTATAGAAGTGGTGGTGGTGTTTAAAAGAAAAA CTATTATTCTATTTAGAAACTTTCGCAATGATAATAGCAATAATAAGGATAAGTGTCCCT TATCTTTACCTTTTTTTAAAAGTTAACTTATTTCGCTCTGAGTTTTGTTCACTCTTAGTG TTATGTGTCTACATGTGGCTGCCGATTGTGCTTCTTTGAAGATGTTGATGAATCGACTAC AAGAATAGTGCTATTATCATTAGTGTTATTCATCAGTTTAATAATATCACAGATTTGTAG TTAGATTGTCTTTTTTTTTCATTTTTTTTATTACTCTTATCTAGATAAGTTGAAATTGCT GTAAGATGTGTGCATGTATGAGTGACTTACTAATTTTAGTAATTGTGCATTTTTAAAGTT ATAGATAAGAAAAACGTACTTGTTTTTTGGCTTTATTTTAGTTAAATTGTCATTATTAAA TAGAATACAAAAGTATTCTTCATTCAACACTTGGAAAACTGTTTTCTATCTCATAATTGT ATTTTTCATCGTTATTATCATTAACTTTAGCTATATATCACTTCCAAAACAGAATCATTT GTCCATCTACTACTGTCTATCACAGCAACTATTAGAAATTTTCACTTTTTAATACTTTTC CTTGTTAAGAAATATGTTCAATGTGTATCGATTTAGTTCACGAGTTTACTTTCTTCTGGT TAATTTCTGATTATATATTGCATTCTTTTTGTCAACCATGTTCAGGATTGTTTAAAAAAT ATTGTTTGAGTATCCATGCCTTGTGATAAAGTCAATACATTTATA



consensusID : consensus_10392#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 641
fasta sequence
                              [TCGAGCCAAAAATTCGGCACGAGGTTTACAAAGTTTCCGTAAACTTGATCATGACACTAAAGGATATGTTTCATTGGATGATTTACGCAAATTTTGTACTGAATCTGGTGAATATGTTAGTGAAGAAGTACTACAGTCTACTTTGAATACAATGGATATTAATAAGAATGGACAAGTTGACATGTCAGAATTTTTACAATTTATGAGTGCAATAAAATCTGGCGTTGTTGTCAACTCACCTTTAAAGAAAGTATTAAGTCGTACTCGAATTCCTGTTTATAGAAGTGGTGGTGGTGTTTAAAAGAAAAACTATTATTCTATTTAGAAACTTTCGCAATGATAATAGCAATAATAAGGATAAGTGTCCCTTATCTTTACCTTTTTTTAAAAGTTAACTTATTTCGCTCTGAGTTTTGTTCACTCTTAGTGTTATGTGTCTACATGTGGCTGCCGATTGTGCTTCTTTGAAGATGTTGATGAATCGACTACAAGAATAGTGCTATTATCATTAGTGTTATTCATCAGTTTAATAATATCACAGATTTGTAGTTAGATTGTCTTTTTTTTTCATTNTTTTTATTACTCTTATCTAGATAAGTTGAAATTGCTGTAAGATGTGTGCATGTATGAGTGACTTACTA]

[+] EMBL CD082984             [TCGAGCCAAAAATTCGGCACGAGGTTTACAAAGTTTCCGTAAACTTGATCATGACACTAAAGGATATGTTTCATTGGATGATTTACGCAAATTTTGTACTGAATCTGGTGAATATGTTAGTGAAGAAGTACTACAGTCTACTTTGAATACAATGGATATTAATAAGAATGGACAAGTTGACATGTCAGAATTTTTACAATTTATGAGTGCAATAAAATCTGGCGTTGTTGTCAACTCACCTTTAAAGAAAGTATTAAGTCGTACTCGAATTCCTGTTTATAGAAGTGGTGGTGGTGTTTAAAAGAAAAACTATTATTCTATTTAGAAACTTTCGCAATGATAATAGCAATAATAAGGATAAGTGTCCCTTATCTTTACCTTTTTTTAAAAGTTAACTTATTTCGCTCTGAGTTTTGTTCACTCTTAGTGTTATGTGTCTACATGTGGCTGCCGATTGTGCTTCTTTGAAGATGTTGATGAATCGACTACAAGAATAGTGCTATTATCATTAGTGTTATTCATCAGTTTAATAATATCACAGATTTGTAGTTAGATTGTCTTTTTTTTTCATTNTTTTTATTACTCTTATCTAGATAAGTTGAAATTGCTGTAAGATGTGTGCATGTATGAGTGACTTACTA]


>consensus_10392#1 TCGAGCCAAAAATTCGGCACGAGGTTTACAAAGTTTCCGTAAACTTGATCATGACACTAA AGGATATGTTTCATTGGATGATTTACGCAAATTTTGTACTGAATCTGGTGAATATGTTAG TGAAGAAGTACTACAGTCTACTTTGAATACAATGGATATTAATAAGAATGGACAAGTTGA CATGTCAGAATTTTTACAATTTATGAGTGCAATAAAATCTGGCGTTGTTGTCAACTCACC TTTAAAGAAAGTATTAAGTCGTACTCGAATTCCTGTTTATAGAAGTGGTGGTGGTGTTTA AAAGAAAAACTATTATTCTATTTAGAAACTTTCGCAATGATAATAGCAATAATAAGGATA AGTGTCCCTTATCTTTACCTTTTTTTAAAAGTTAACTTATTTCGCTCTGAGTTTTGTTCA CTCTTAGTGTTATGTGTCTACATGTGGCTGCCGATTGTGCTTCTTTGAAGATGTTGATGA ATCGACTACAAGAATAGTGCTATTATCATTAGTGTTATTCATCAGTTTAATAATATCACA GATTTGTAGTTAGATTGTCTTTTTTTTTCATTNTTTTTATTACTCTTATCTAGATAAGTT GAAATTGCTGTAAGATGTGTGCATGTATGAGTGACTTACTA



consensusID : consensus_10392#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 559
fasta sequence
                              [ATGNAATAGTATGTAGTACAAAAATACCTCATATAATGTCAGCAACCAGTCGTACATTGTGTCAGTTTGAAAATACCAAAATTATAACTTACTGAAATGAAGTGCCTGTATTCACACTAACAATGTAGAAAGAAATTGAATGGAAATTCTTTTTTTTCTAATTCTCCTATTATCGTCATTATCTTTGNCTAATTACAGACTTGCTTTAATATGCATTCATTACAAATTATGTAAACTTTAATTAATAACTACCATATACATATAAATATAAGGTAATAATAATAATCTTATCAAATTATTAACAATATTNNNCCTATTCTTCTCTTCTAGGTTTATGAGTGCAANAAAATCTGGCGTGGNNGTCAACTCACCTTTAAAGAAAGTATTAAGTCGTACTCGGATTCCTGTTTATAGAAGTGGTGGTGGTGTTTAAAAGAAAAACTATTATTCTATTTAGAAACTTTCGNCATGATAATAGCAATAATAAGGATAGTGTCCCTTATCTTTACCTTTTTTTAAAGTTAACTTATTTCGCTCTGAGTTTTGNTCACTCTNAGGG]

[+] EMBL SM782                [ATGNAATAGTATGTAGTACAAAAATACCTCATATAATGTCAGCAACCAGTCGTACATTGTGTCAGTTTGAAAATACCAAAATTATAACTTACTGAAATGAAGTGCCTGTATTCACACTAACAATGTAGAAAGAAATTGAATGGAAATTCTTTTTTTTCTAATTCTCCTATTATCGTCATTATCTTTGNCTAATTACAGACTTGCTTTAATATGCATTCATTACAAATTATGTAAACTTTAATTAATAACTACCATATACATATAAATATAAGGTAATAATAATAATCTTATCAAATTATTAACAATATTNNNCCTATTCTTCTCTTCTAGGTTTATGAGTGCAANAAAATCTGGCGTGGNNG                                                                                                                                                                                                     ]
[+] EMBL CD110803             [                                                                                                                                                                                                                              CAAATTATGTAAACTTTAATTAATAACTACCATATACATATAAATATAAGGTAATAATAATAATCTTATCAAATTATTAACAATATTTTTCCTATTCTTCTTTTCTA GTTTATGAGTGCAATAAAATCTGGCGTTGTTGTCAACTCACCTTTAAAGAAAGTATTAAGTCGTACTCGGATTCCTGTTTATAGAAGTGGTGGTGGTGTTTAAAAGAAAAACTATTATTCTATTTAGAAACTTTCGNCATGATAATAGCAATAATAAGGATAGTGTCCCTTATCTTTACCTTTTTTTAAAGTTAACTTATTTCGCTCTGAGTTTTGNTCACTCTNAGGG]


>consensus_10392#2 ATGNAATAGTATGTAGTACAAAAATACCTCATATAATGTCAGCAACCAGTCGTACATTGT GTCAGTTTGAAAATACCAAAATTATAACTTACTGAAATGAAGTGCCTGTATTCACACTAA CAATGTAGAAAGAAATTGAATGGAAATTCTTTTTTTTCTAATTCTCCTATTATCGTCATT ATCTTTGNCTAATTACAGACTTGCTTTAATATGCATTCATTACAAATTATGTAAACTTTA ATTAATAACTACCATATACATATAAATATAAGGTAATAATAATAATCTTATCAAATTATT AACAATATTNNNCCTATTCTTCTCTTCTAGGTTTATGAGTGCAANAAAATCTGGCGTGGN NGTCAACTCACCTTTAAAGAAAGTATTAAGTCGTACTCGGATTCCTGTTTATAGAAGTGG TGGTGGTGTTTAAAAGAAAAACTATTATTCTATTTAGAAACTTTCGNCATGATAATAGCA ATAATAAGGATAGTGTCCCTTATCTTTACCTTTTTTTAAAGTTAACTTATTTCGCTCTGA GTTTTGNTCACTCTNAGGG



consensusID : consensus_10392#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 404
fasta sequence
                              [GCTTCCCTTGCCCATGTCTTGATCATGACACTAAAGGATATGTTTCATTGGATGATTTACGCAAATTTTGTACTGAATCTGGTGAATATGTTAGTGAAGAAGTACTACAGTCTACTTTGAATACAATGGATATTAATAAGAATGGACAAGTTGACATGTCAGAATTTTTACAATTTATGAGTGCAATAAAATCTGGCGTTGTTGTCAACTCACCTTTAAAGAAAGTATTAAGTCGTACTCGAATTCCTGGTTATAGAAGTGGTGGTGGTGTTTAAAAGAAAAACTATTATTCTATTTAGAAACTTTCGCAATGATAATAGCAATAATAAGGATAAGTGTCCCTTATCTTTACCTTTTTTTAAAAGTTAACTTATTTCGCTCTGAGTTTTGTTCACTCTTAGTGT]

[-] EMBL CD150008             [GCTTCCCTTGCCCATGTCTTGATCATGACACTAAAGGATATGTTTCATTGGATGATTTACGCAAATTTTGTACTGAATCTGGTGAATATGTTAGTGAAGAAGTACTACAGTCTACTTTGAATACAATGGATATTAATAAGAATGGACAAGTTGACATGTCAGAATTTTTACAATTTATGAGTGCAATAAAATCTGGCGTTGTTGTCAACTCACCTTTAAAGAAAGTATTAAGTCGTACTCGAATTCCTGGTTATAGAAGTGGTGGTGGTGTTTAAAAGAAAAACTATTATTCTATTTAGAAACTTTCGCAATGATAATAGCAATAATAAGGATAAGTGTCCCTTATCTTTACCTTTTTTTAAAAGTTAACTTATTTCGCTCTGAGTTTTGTTCACTCTTAGTGT]
[-] EMBL CD149993             [           CCATGTTTTGATCATGACACTAAAGGATATGTTTCATTGGATGATTTACGCAAATTTTGTACTGAATCTGGTGAATATGTTAGTGAAGAAGTACTACAGTCTACTTTGAATACAATGGATATTAATAAGAATGGACAAGTTGACATGTCAGAATTTTTACAATTTATGAGTGCAATAAAATCTGGCGTTGTTGTCAACTCACCTTTAAAGAAAGTATTAAGTCGTACTCGAATTCCTGGTTATAGAAGTGGTGGTGGTGTTTAAAAGAAAAACTATTATTCTATTTAGAAACTTTCGCAATGATAATAGCAATAATAAGGATAAGTGTCCCTTATCTTTACCTTTTTTTAAAAGTTAACTTATTTCGCTCTGAGTTTTGTTCACTCTTAGTGT]


>consensus_10392#3 GCTTCCCTTGCCCATGTCTTGATCATGACACTAAAGGATATGTTTCATTGGATGATTTAC GCAAATTTTGTACTGAATCTGGTGAATATGTTAGTGAAGAAGTACTACAGTCTACTTTGA ATACAATGGATATTAATAAGAATGGACAAGTTGACATGTCAGAATTTTTACAATTTATGA GTGCAATAAAATCTGGCGTTGTTGTCAACTCACCTTTAAAGAAAGTATTAAGTCGTACTC GAATTCCTGGTTATAGAAGTGGTGGTGGTGTTTAAAAGAAAAACTATTATTCTATTTAGA AACTTTCGCAATGATAATAGCAATAATAAGGATAAGTGTCCCTTATCTTTACCTTTTTTT AAAAGTTAACTTATTTCGCTCTGAGTTTTGTTCACTCTTAGTGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10392#0      GAAGTATGGCAGAAGAGACTGTAGATAAAGCGATAAAGGTATGTGATCTTAAACCAACTG 60
consensus_10392#1      ------------------------------------------------------------
consensus_10392#3      ------------------------------------------------------------
consensus_10392#2      ------------------------------------------------------------
                                                                                   

consensus_10392#0      GTCCATGTCGTACCAAAGGTCTTCTTTTAGAGGGTGCTCATGGTTGGTCACCAAATCTAT 120
consensus_10392#1      ------------------------------------------------------------
consensus_10392#3      ------------------------------------------------------------
consensus_10392#2      ------------------------------------------------------------
                                                                                   

consensus_10392#0      TTATACAAATTGTTCAAGAATATGGTATGGATGTGGATGTGGCACGTCATTTAACAGGGA 180
consensus_10392#1      ------------------------------------------------------------
consensus_10392#3      ------------------------------------------------------------
consensus_10392#2      ------------------------------------------------------------
                                                                                   

consensus_10392#0      TTTATGGTGATAAAGCTATCACTATAGCTAATATGTCCAAACTAACTGGTTTAAGATGGC 240
consensus_10392#1      ------------------------------------------------------------
consensus_10392#3      ------------------------------------------------------------
consensus_10392#2      ------------------------------------------------------------
                                                                                   

consensus_10392#0      CAATATTAGGTAAAAAATTACATCCTGAATTTCCTTTTATTGAAGCTGAAGTGGAATATG 300
consensus_10392#1      ------------------------------------------------------------
consensus_10392#3      ------------------------------------------------------------
consensus_10392#2      ------------------------------------------------------------
                                                                                   

consensus_10392#0      CATGCCGAGAATATGCTTGTCATGTTGTTGATTTTCTTGCTCGTCGTACTCGTTTAGCAT 360
consensus_10392#1      ------------------------------------------------------------
consensus_10392#3      ------------------------------------------------------------
consensus_10392#2      ------------------------------------------------------------
                                                                                   

consensus_10392#0      TTTTGAATGTACGAGCTGCGGAAGAAGCTTTACCAAGAATTGTTGATTTAATGGGTGAAC 420
consensus_10392#1      ------------------------------------------------------------
consensus_10392#3      ------------------------------------------------------------
consensus_10392#2      ------------------------ATGNAATAGTATGTAGTACAAAAATACCTCATATAA 36
                                                                                   

consensus_10392#0      ATTTAAAATGGAATAGTGAAAGAAAAAAGCAAGAAATGCGAGAGGCAGAGAACTTCTTAA 480
consensus_10392#1      ------------------------------------------------------------
consensus_10392#3      ------------------------------------------------------------
consensus_10392#2      TGTCAGCAACCAGTCGTACATTGTGTCAGTTTGAAA-ATACCAAAATTATAACTTACTGA 95
                                                                                   

consensus_10392#0      AATCTGAAATGGGTCTTGGTCTACGTGTTATGGAAGGTGTTCGTATGGATTTGACTATTG 540
consensus_10392#1      -----------------------------------------------------TCGAGCC 7
consensus_10392#3      ------------------------------------------------------------
consensus_10392#2      AATGAAGTGCCTGTATTCACACTAACAATGTAGAAAGAAATTGAATGGAAATTCTTTTTT 155
                                                                                   

consensus_10392#0      ATGAAATTAGT-CATCTTTTACAAAGTTTCCGTAAACTTGATCAT-GACACTAAAGGATA 598
consensus_10392#1      AAAAATTCGGCACGAGGTTTACAAAGTTTCCGTAAACTTGATCAT-GACACTAAAGGATA 66
consensus_10392#3      ----------------GCTTCCCTTGCCCATGT---CTTGATCAT-GACACTAAAGGATA 40
consensus_10392#2      TTCTAATTCTCCTATTATCGTCATTATCTTTGN----CTAATTACAGACTTGCTTTAATA 211
                                            *         *      * ** *  ***        ***

consensus_10392#0      TGT-TTCATTGGATGATTTACGCAAATTTTG--TACTGAATCTGGTGAATATGTTAGTGA 655
consensus_10392#1      TGT-TTCATTGGATGATTTACGCAAATTTTG--TACTGAATCTGGTGAATATGTTAGTGA 123
consensus_10392#3      TGT-TTCATTGGATGATTTACGCAAATTTTG--TACTGAATCTGGTGAATATGTTAGTGA 97
consensus_10392#2      TGCATTCATT--ACAAATTATGTAAACTTTAATTAATAACTACCATATACATATAAATAT 269
                       **  ******  *  * *** * *** ***   ** * * *    *  * ** * * *  

consensus_10392#0      AGAAGTACTACAGTCTACTTTGAATACAATGGATATTAATAAGAATGGACAAGTTGACAT 715
consensus_10392#1      AGAAGTACTACAGTCTACTTTGAATACAATGGATATTAATAAGAATGGACAAGTTGACAT 183
consensus_10392#3      AGAAGTACTACAGTCTACTTTGAATACAATGGATATTAATAAGAATGGACAAGTTGACAT 157
consensus_10392#2      AAGGTAATAATAATAATCTT---ATCAAAT---TATTAACAATATTNNNCCTATT--CTT 321
                       *     *  * * *   ***   **  ***   ****** ** * *   *   **  * *

consensus_10392#0      GTCAGAATTTTTACAATTTATGAGTGCAATAAAATCTGGCGTTGTTGTCAACTCACCTTT 775
consensus_10392#1      GTCAGAATTTTTACAATTTATGAGTGCAATAAAATCTGGCGTTGTTGTCAACTCACCTTT 243
consensus_10392#3      GTCAGAATTTTTACAATTTATGAGTGCAATAAAATCTGGCGTTGTTGTCAACTCACCTTT 217
consensus_10392#2      CTC-----TTCTA-GGTTTATGAGTGCAANAAAATCTGGCGTGGNNGTCAACTCACCTTT 375
                        **     ** **   ************* ************ *  **************

consensus_10392#0      AAAGAA-GTATTAAGTCGTACTCGAATTCCTGTTTATAGAAGTGGTGGTGGTGTTTAAAA 834
consensus_10392#1      AAAGAAAGTATTAAGTCGTACTCGAATTCCTGTTTATAGAAGTGGTGGTGGTGTTTAAAA 303
consensus_10392#3      AAAGAAAGTATTAAGTCGTACTCGAATTCCTGGTTATAGAAGTGGTGGTGGTGTTTAAAA 277
consensus_10392#2      AAAGAAAGTATTAAGTCGTACTCGGATTCCTGTTTATAGAAGTGGTGGTGGTGTTTAAAA 435
                       ****** ***************** ******* ***************************

consensus_10392#0      GAAAAACTATTATTCTATTTAGAAACTTTCGCAATGATAATAGCAATAATAAGGATAAGT 894
consensus_10392#1      GAAAAACTATTATTCTATTTAGAAACTTTCGCAATGATAATAGCAATAATAAGGATAAGT 363
consensus_10392#3      GAAAAACTATTATTCTATTTAGAAACTTTCGCAATGATAATAGCAATAATAAGGATAAGT 337
consensus_10392#2      GAAAAACTATTATTCTATTTAGAAACTTTCGNCATGATAATAGCAATAATAAGGATA-GT 494
                       *******************************  ************************ **

consensus_10392#0      GTCCCTTATCTTTACCTTTTTTTAAAAGTTAACTTATTTCGCTCTGAGTTTTGTTCACTC 954
consensus_10392#1      GTCCCTTATCTTTACCTTTTTTTAAAAGTTAACTTATTTCGCTCTGAGTTTTGTTCACTC 423
consensus_10392#3      GTCCCTTATCTTTACCTTTTTTTAAAAGTTAACTTATTTCGCTCTGAGTTTTGTTCACTC 397
consensus_10392#2      GTCCCTTATCTTTACCTTTTTTTAAA-GTTAACTTATTTCGCTCTGAGTTTTGNTCACTC 553
                       ************************** ************************** ******

consensus_10392#0      TTAGTGTTATGTGTCTACATGTGGCTGCCGATTGTGCTTCTTTGAAGATGTTGATGAATC 1014
consensus_10392#1      TTAGTGTTATGTGTCTACATGTGGCTGCCGATTGTGCTTCTTTGAAGATGTTGATGAATC 483
consensus_10392#3      TTAGTGT----------------------------------------------------- 404
consensus_10392#2      TNAGGG------------------------------------------------------ 559
                       * ** *                                                      

consensus_10392#0      GACTACAAGAATAGTGCTATTATCATTAGTGTTATTCATCAGTTTAATAATATCACAGAT 1074
consensus_10392#1      GACTACAAGAATAGTGCTATTATCATTAGTGTTATTCATCAGTTTAATAATATCACAGAT 543
consensus_10392#3      ------------------------------------------------------------
consensus_10392#2      ------------------------------------------------------------
                                                                                   

consensus_10392#0      TTGTAGTTAGATTGTCTTTTTTTTTCATTTTTTTTATTACTCTTATCTAGATAAGTTGAA 1134
consensus_10392#1      TTGTAGTTAGATTGTCTTTTTTTTTCATTNTTTTTATTACTCTTATCTAGATAAGTTGAA 603
consensus_10392#3      ------------------------------------------------------------
consensus_10392#2      ------------------------------------------------------------
                                                                                   

consensus_10392#0      ATTGCTGTAAGATGTGTGCATGTATGAGTGACTTACTAATTTTAGTAATTGTGCATTTTT 1194
consensus_10392#1      ATTGCTGTAAGATGTGTGCATGTATGAGTGACTTACTA---------------------- 641
consensus_10392#3      ------------------------------------------------------------
consensus_10392#2      ------------------------------------------------------------
                                                                                   

consensus_10392#0      AAAGTTATAGATAAGAAAAACGTACTTGTTTTTTGGCTTTATTTTAGTTAAATTGTCATT 1254
consensus_10392#1      ------------------------------------------------------------
consensus_10392#3      ------------------------------------------------------------
consensus_10392#2      ------------------------------------------------------------
                                                                                   

consensus_10392#0      ATTAAATAGAATACAAAAGTATTCTTCATTCAACACTTGGAAAACTGTTTTCTATCTCAT 1314
consensus_10392#1      ------------------------------------------------------------
consensus_10392#3      ------------------------------------------------------------
consensus_10392#2      ------------------------------------------------------------
                                                                                   

consensus_10392#0      AATTGTATTTTTCATCGTTATTATCATTAACTTTAGCTATATATCACTTCCAAAACAGAA 1374
consensus_10392#1      ------------------------------------------------------------
consensus_10392#3      ------------------------------------------------------------
consensus_10392#2      ------------------------------------------------------------
                                                                                   

consensus_10392#0      TCATTTGTCCATCTACTACTGTCTATCACAGCAACTATTAGAAATTTTCACTTTTTAATA 1434
consensus_10392#1      ------------------------------------------------------------
consensus_10392#3      ------------------------------------------------------------
consensus_10392#2      ------------------------------------------------------------
                                                                                   

consensus_10392#0      CTTTTCCTTGTTAAGAAATATGTTCAATGTGTATCGATTTAGTTCACGAGTTTACTTTCT 1494
consensus_10392#1      ------------------------------------------------------------
consensus_10392#3      ------------------------------------------------------------
consensus_10392#2      ------------------------------------------------------------
                                                                                   

consensus_10392#0      TCTGGTTAATTTCTGATTATATATTGCATTCTTTTTGTCAACCATGTTCAGGATTGTTTA 1554
consensus_10392#1      ------------------------------------------------------------
consensus_10392#3      ------------------------------------------------------------
consensus_10392#2      ------------------------------------------------------------
                                                                                   

consensus_10392#0      AAAAATATTGTTTGAGTATCCATGCCTTGTGATAAAGTCAATACATTTATA 1605
consensus_10392#1      ---------------------------------------------------
consensus_10392#3      ---------------------------------------------------
consensus_10392#2      ---------------------------------------------------
                                                                          




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)