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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10395#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 972 fasta sequence
[TTTTTTTTTTTTTTTTTAAGCTTTCATGATTTATAATAACATAAGTAAACGTAATTAATGCAAATCATGCGGGAATTTCCAGTTTTAAATCCGGAGTTAAACAACAGTGAAATGCTTTACAATCCCTAATGGCAAAAATTAATTGAACTGACGCGAGACGAATGATACTGACAAAAAGTTTAACATGAGGAAGGAAATCACATACAAAACACCAAAATGGTGATTTCTTTTGTAAATGAAACAAGTTAGACGAAGATAGGAGGTCATCGACATAATGCATAGTAAGATAACTTAGTGATTACAAGGTTTCCAGACGCAGATTTCGCGCGCTAGCACGTAAAAATAGAGAATAGAGTAGTCCTATTGA-TTGGAATAACTTTCCACTTCTATGAATGCTAGTATTTTGTTTTATTATTGGGGGGTAGTGCCGAACATTGAGGCTTCCCGACGACGCCTGTGAGAAGCTTCATGCTTCAATGGTTGTTTCTGACTCTGAGGGCTTGGTGCGGAGTGTTGCACTGGAGGAGGTAAAGCTGATGGTGCAGGAGCTGCTTCTTGTTTCTTCCCGCCAAATATATAC---CATTTTAAAAGCAGGACACAACATCAACGACATAAAGTGCCACAACATTATCCTAGTGCTATTATGAGTACTAATACAACGGCACCTATGATTATATTCATCTTCATATTTTTCCACCAATATTTGTTTTTCAATTTACCTGCACTGGCCTCGAACTGTGATGCGCCTGCCTGCAAAGCATCTGCTCGATCATCCAACTGGCTAAGTTTAGCGTCGCGCTCCAGAACTTTCTCCATGTTTACTCGCATGATGTCTACTACTTCATCAACCTGAGCTTGGGTTTGTTGCAGGCGCTTGTTTTGTGGTCGTGGTTGAGGAGTTGCCCCATTAGCAACAGTGGCTCCTGCATCGGCTGACATCTTCGTAAACAGCTCAAAGATACCGCGTGCCAC]
[+] EMBL AI395765 [TTTTTTTTTTTTTTTTTAAGCTTTCATGATTTATAATAACATAAGTAAACGTAATTAATGCAAATCATGCGGGAATTTCCAGTTTTAAATCCGGAGTTAAACAACAGTGAAATGCTTTACAATCCCTAATGGCAAAAATTAATTGAACTGACGCGAGACGAATGATACTGACAAAAAGTTTAACATGAGGAAGGAAATCACATACAAAACACCAAAATGGTGATTTCTTTTGTAAATGAAACAAGTTAGACGAAGATAGGAGGTCATCGACATAATGCATAGTAAGATAACTTAGTGATTACAAGGTTTCCAGACGCAGATTTCGCGCGCTAGCACGTAAAAATAGAGAATAGAGTAGTCCTATTGACTTGGA ]
[-] EMBL CD136020 [ AGATTTCGCGCGCTAGCACGTAAAAATAAAGAATAGAGTAGTCCTATTGA TTGGAATAACTTTCCACTTCTATGAATGCTAGTATTTTGTTTTATTATTGGGGGGTAGTGCCGAACATTGAGGCTTCCCGACGACGCCTGTGAGAAGCTTCATGCTTCAATGGTTGTTTCTGACTCTGAGGGCTTGGTGCGGAGTGTTGCACTGGAGGAGGTAAAGCTGATGGTGCAGGAGCTGCTTCTTGTTTCTTCCCGCCAAATATATAC CATTTTAAAAGCAGGACACAACATCAACGACATAAAGTGCCACAACATTATCCTAGTGCTATTATGAGTACTAATACAACGGCACCTATGA TATATTCATCTTCATATTTTTCCACCAATATTTGTTTTTCAATTTACCTGCACTGGCCTCGAACTGTGATGCGCCTGCCTGCAA ]
[-] EMBL CD118379 [ aAGTGCCGAACATTGAGGCTTCCCGACGACGCCTGTGAGAAGCTTCATGCTTCAATGGTTGTTTCTGACTCTGAGGGCTTGGTGCGGAGTGTTGCACTGGAGGAGGTAAAGCTGATGGTGCAGGAGCTGCTTCTTGTTTCTTCCCGCCAAATATATAC CATTTTAAAAGCAGGACACAACATCAACGACATAAAGTGCCACAACATTATCCTAGTGCTATTATGAGTACTAATACAACGGCACCTATGATTATATTCATCTTCATATTTTTCCACCAATATTTGTTTTTCAATTTACCTGCACTGGCCTCGAACTGTGATGCGCCTGCCTGCAAAGCATCTGCTCGATCATCCAACTGGCTAAGTTTAGCGTCGCGCTCCAGAACTTTCTCCATGTTTACTCGCATGATGTCTACTACTTCATCAACCTGAGCTTGGGTTTGTTGCAGGCGCTTGTTTTGTGGTCGTGGTTGAGGAGTTGCCCCATTAG ]
[+] EMBL CD091714 [ CTGAGGGCTTGGTGCGGAGTGTTGCACTGGAGGAGGTAAAGCTGATGGTGCAGGAGATGCTTCTTGTTTCTTCCCGCCAAATATATAC CATTTTAAAAGCAGGACACAACATCAACGACATAAAGTGACACAACATTATCCTAGTGCTATTATGAGTACTAATACAACGGCACCTATGATTATATTCATCTTCATATTTTTCCACCAATATTTGTTTTTCAATTTACCTGCACTGGCCTCGAACTGTGATGCGCCTGCCTGCAAAGCATCTGCTCGATCATCCAACTGGCTAAGTTTAGCGTCGCGCTCCAc ]
[-] EMBL CD157883 [ atacCCAAATA ACACTCACATTTTAAAAGCAGGACACAACATCAACGACATAAAGTGCCACAACATTATCCTAGTGCTATTATGAGTACTAATACAACGGCACCTATGATTATATTCATCTTCATATTTTTCCACCAATATTTGTTTTTCAATTTACCTGCACTGGCCTCGAACTGTGATGCGCCTGCCTGCAAAGCATCTGCTCGATCATCCAACTGGCTAAGTTTAGCGTCGCGCTCCAGAACTTTCTCCATGTTTACTCGCATGATGTCTACTACTTCATCAACCTGAGCTTGGGTTTGTTGCAGGCGCTTGTTTTGTGGTCGTGGTTGAGGAGTTGCCCCATTAGCAACAGTGGCTCCTGCATCGGCTGACATCTTCGTAAACAGCTCAAAGATACCGCG ]
[-] EMBL CD183855 [ GTGCCACAACATTATCCTAGTGCTATTATGAGTACTAATACAACGGCACCTATGATTATATTCATCTTCATATTTTTCCACCAATATTTGTTTTTCAATTTACCTGCACTGGCCTCGAACTGTGATGCGCCTGCCTGCAAAGCATCTACTCGATCATCCAACTGGCTAAGTTTAGCGTCGCGCTCCAGAACTTTCTCCATGTTTACTCGCATGATGTCTACTACT ]
[+] EMBL CD095392 [ AACTGTGATGCGCCTGCCTGCAAAGCATCTGCTCGATCATCCAACTGGCTAAGTTTAGCGTCGCGCTCCAGAACTTTCTCCATGTTTACTCGCATGATGTCTACTACTTCATCAACCTGAGCTTGGGTTTGTTGCAGGCGCTTGTTTTGTGGTCGTGGTTGAGGAGTTGCCCCATTAGCAACAGTGGCTCCTGCATTGGCTGACATCTTCGTAAACAGCTCAAAGATACC CGTGCCA ]
[-] EMBL CD095047 [ ACTGTGATGCGCCTGCCTGCAAAGCATCTGCTCGATCATCCAACTGGCTAAGTTTAGCGTCGCGCTCCAGAACTTTCTCCATGTTTACTCGCATGATGTCTACTACTTCATCAACCTGAGCTTGGGTTTGTTGCAGGCGCTTGTTTTGTGGTCGTGGTTGAGGAGTTGCCCCATTAGCAACAGTGGCTCCTGCATCGGCTGACATCTTCGTAAACAGCTCAAAGATACCGCGTagttc]
[+] EMBL CD167631 [ ACTTTCTCCATGTTTACTCGCATGATGTCTACTACTTCATCAACCTGAGCTTAGGTTTGTTGCAGGCGCTTGTTTTGTGGTCGTGGTTGAGGAGTTGCCCC ]
consensusID : consensus_10395#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 790 fasta sequence
[TTTTTTTTTTTTTTAAACCATGATTATGTGTATTTATCCAAATGTCAATTTGAAAAAGAGTAATACGAGAGGAAGATGAACAT-AAGCTTTCATGATTTATAATAACAT-AAGTAAACGTAA-TTAATGCAAATCATGCGGGAATTTTCAGTTTTAAATCCGGAGTTAAACAACAGTGAAATGCTTTACAATCCCTAATGGCAAAAATTAATTGAACTGACGCGAGACGAATGATACTGACAAAAAGTTTAACATGAGGAAGGAAATCACATACAAAACACCAAAATGGTGATTTCTT-TTGTAAATGAAACAAGTTAGACGAAGATAGGAGGTCATCGACATAATGCATAGTAAGATAACTTAGTGATTAGAAGGTTTCCAGACGCAGATTTCGCGCGCTAGCACGTAAAAATAAAGAATAGAGTAGTCCTATTGATTGGAATAACTTTCCACTTCTATGAATGCTAGTATTTTGTTTTATTATTGGGGGGTAGTGCCGAACATTGAGGCTTCCCGACGACGCCTGTGAGAAGCTTCATGCTTCAATGGTTGTTTCTGACTCTGAGGGCTTGGTGCGGAGTGTTGCACTGGAGGAGGTAAAGCTGATGGTGCAGGAGCTGCTTCTTGTTTCTTCCCGCCAAATATATACCATCCTAGTGCTATTATGAGTACTAATACAACGGCACCTATGATTATATTCATCTTCATATTTTTCCACCAATATTTGTTTTTCAATTTACCTGCACTGGCCTCGAACTGTGATGCGCCTGCCTGCAAAGCATCTGCTCGATCA]
[+] EMBL AI395641 [TTTTTTTTTTTTTTAAACCATGATTATGTGTATTTATCCAAATGTCAATTTGAAAAAGAGTAATACGAGAGGAAGATGAACAT AAGCTTTCATGATTTATAATAACAT AAGTAAACGTAA TTAATGCAAATCATGCGGGAATTTTCAGTTTTAAATCCGGAGTTAAACAACAGTGAAATGCTTTACAATCCCTAATGGCAAAAATTAATTGAACTGACGCGAGACGAATGATACTGACAAAAAGTTTAACATGAGGAAGGAAATCACATACAAAACACCAAAATGGTGATTTCTTNTTGTAAATGAAACAAGTTAGACGAAGATAGGAGGTCATCGACATAATGCATAGTAAGATAACTTAGTGATTAGAAGGTTTCCA ]
[-] EMBL CD193887 [ gACATAAAGCTTCNATGANTTATAAT ACATAAAGT AACGTAANTTAATGCAAATCATGCGGGAATTTCNAGTTTANNCTCCGGAGTTAAACAACAGTGAAATGCTTTACAATCCCTAATGGCAAAAATTAATTGAACTGACGCGAGACGAATGATACTGACAAAAAGTTTAACATGAGGAAGGAAATCACATACAAAACACCAAAATGGTGATTTCTT TTGTAAATGAAACAAGTTAGACGAAGATAGGAGGTCATCGACATAATGCATAGTAAGATAACTTAGTGATTAGAAGGTTTCCAGACGCAGATTTCGCGCGCTAGCACGTAAAAATAAAGAATAGAGTAGTCCTATTGATTGGAATAAC TTCCACTTCTATcgtttca ]
[+] EMBL CD125808 [ TTGAACTGACGCGAGACGAATGATACTGACAAAAAGTTTAACATGAGGAAGGAAATCACATACAAAACACCAAAATGGTGATTTCTT TTGTAAATGAAACAAGTTAGACGAAGATAGGAGGTCATCGACATAATGCATAGTAAGATAACTTAGTGATTAGAAGGTTTCCAGACGCAGATTTCGCGCGCTAGCACGTAAAAATGGAGAATAGAGTAGTCCTATTGATTGGAATAACTTTCCACTTCTATGAATGCTAGTATTTTGTTTTATTATTGGGGGGTAGTGCCGAACATTGAGGCTTCCCGACGACGCCTGTGAGAAGCTTCATGCTTCAATGGTTGTTTCTGACTCTGAGGGCTTGGTGCGGAGTGTTGCACTGGAGGAGGTAAAGCTGATGGTGCAGGAGCTGCTTCTTGTTTCTTCCCGCCAAATATATACCATCCTAGTGCTATTATGAGTACTAATACAACGGCACCTATGATTATATTCATCTTTATATTTTTCCACCAATATATGTTTTTCAATTTACCTGCACTGG ]
[+] EMBL CD182590 [ TGACAAAAAGTTTAACATGAGGAAGGAAATCACATACAAAACACCAAAATGGTGATTTCTT TTGTAAATGAAACAAGTTAGACGAAGATAGGAGGTCATCGACATAATGCATAGTAAGATAACTTAGTGATTAGAAGGTTTCCAGACGCAGATTTCGCGCGCTAGCACGTAAAAATAAAGAATAGAGTAGTCCTATTGATTGGAATAACTTTCCACTTCTATGAATGCTAGTATTTTGTTTTATTAT ]
[-] EMBL CD178674 [ CATCCAAAACCCCAAAATGGT ATTTCTT TTGTAAATGAAACAAGTTAGACGAAGATAGGAGGTCATCGACATAATGCATAGTAAGATAACTTAGTGATTAGAAGGTTTCCAGACGCAGATTTCGCGCGCTAGCACGTAAAAATAAAGAATAGAGTAGTCCTATTGATTGGAATAACTTTCCACTTCTATGAATGCTAGTATTTTGTTTTATTATTGGGGGGTAGTGCCGAACATTGAGGCTTCCCGACGACGCCTGTGAGAAGCTTCATGCTTCAATGGTTGTTTCTGACTCTGAGGGCTTGGTGCGGAGTGTTGCACTGGAGGAGGTAAAGCTGATGGTGCAGGAGCTGCTTCTTGTTTCTTCCCGCCAAATATATACCATCCTAGTGCTATTATGAGTACTAATACAACGGCACCTATGATTATATTCATCTTCATATTTTTCCACCAATATTTGTTTTTCAATTTACCTGCACTGGCCTCGAACTGTGATGCGCCTGCCTGCAAAGCATCTGCTCGATCA]
[-] EMBL CD182508 [ TAATGCATAGTAAGATAACTTAGTGATTAGNAGGTTTCCAGACGCAGATTTCGCGCGCTAGCACGTAAAAATAAAGAATAGAGTAGTCCTATTGATTGGAATAACTTTCCACTTCTATGAATGCTAGTATTNTGTTTTATTATTGGGGGGTAGTGCCGAACATTGAGGCTTCCCGACGACGCCTGTGAGAAGCTTCATGCTCCAATGGTTGTTTCTGACTCTGAGGGCTTGGTGCGGAGTGTTGCACTGGAGGAGGTAAAGCTGATGGTGCAGGAGCTGCTTCTTGTTTCTTCCCGCCAAATATATACCATCCTAGTGCTATTATGAGTACTAATACAACGGCACCTATGATTATATTCATCTTCATATTTTTCCACCAATATTTGTTTTTCAATTTACCTGCACTGGCCTCGAACTGTGATGCGCCTGCCT ]
consensusID : consensus_10395#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 318 fasta sequence
[TATGAAAGCTAGNAATTTGGTTTATTATTGGGGGGTAGTGCCGAACATTGAGGTTCCCGACGACGCCTGTGAGAAGCTTCATGCTTCAATGGTTGTTTCTGACTCTGAGGGCTTGGTGCGGAGTGTTGCACTGGAGGAGGTAAAGCTGATGGTGCAGGAGCTGCTTCTTGTTTCCTATGGAAGGAAAACATTGTGTAAAATATACAATAATTTATTAACCAATTATAAACATCTTTTCATACTCAACATGTCAGTTTTATACCAGCGAGGTCACCTTTCATATACTTAGTGTGGTATATATCTCAAGGACTCACTCAT]
[-] EMBL SMAA8312 [TATGAAAGCTAGNAATTTGGTTTATTATTGGGGGGTAGTGCCGAACATTGAGGTTCCCGACGACGCCTGTGAGAAGCTTCATGCTTCAATGGTTGTTTCTGACTCTGAGGGCTTGGTGCGGAGTGTTGCACTGGAGGAGGTAAAGCTGATGGTGCAGGAGCTGCTTCTTGTTTCCTATGGAAGGAAAACATTGTGTAAAATATACAATAATTTATTAACCAATTATAAACATCTTTTCATACTCAACATGTCAGTTTTATACCAGCGAGGTCACCTTTCATATACTTAGTGTGGTATATATCTCAAGGACTCACTCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10395#0 ------------------------------------------------------------
consensus_10395#1 TTTTTTTTTTTTTTAAACCATGATTATGTGTATTTATCCAAATGTCAATTTGAAAAAGAG 60
consensus_10395#2 ------------------------------------------------------------
consensus_10395#0 ------TTTTTTTTTTTTTTTTTAAGCTTTCATGATTTATAATAACATAAGTAAACGTAA 54
consensus_10395#1 TAATACGAGAGGAAGATGAACATAAGCTTTCATGATTTATAATAACATAAGTAAACGTAA 120
consensus_10395#2 ------------------------------------------------------------
consensus_10395#0 TTAATGCAAATCATGCGGGAATTTCCAGTTTTAAATCCGGAGTTAAACAACAGTGAAATG 114
consensus_10395#1 TTAATGCAAATCATGCGGGAATTTTCAGTTTTAAATCCGGAGTTAAACAACAGTGAAATG 180
consensus_10395#2 ------------------------------------------------------------
consensus_10395#0 CTTTACAATCCCTAATGGCAAAAATTAATTGAACTGACGCGAGACGAATGATACTGACAA 174
consensus_10395#1 CTTTACAATCCCTAATGGCAAAAATTAATTGAACTGACGCGAGACGAATGATACTGACAA 240
consensus_10395#2 ------------------------------------------------------------
consensus_10395#0 AAAGTTTAACATGAGGAAGGAAATCACATACAAAACACCAAAATGGTGATTTCTTTTGTA 234
consensus_10395#1 AAAGTTTAACATGAGGAAGGAAATCACATACAAAACACCAAAATGGTGATTTCTTTTGTA 300
consensus_10395#2 ------------------------------------------------------------
consensus_10395#0 AATGAAACAAGTTAGACGAAGATAGGAGGTCATCGACATAATGCATAGTAAGATAACTTA 294
consensus_10395#1 AATGAAACAAGTTAGACGAAGATAGGAGGTCATCGACATAATGCATAGTAAGATAACTTA 360
consensus_10395#2 ------------------------------------------------------------
consensus_10395#0 GTGATTACAAGGTTTCCAGACGCAGATTTCGCGCGCTAGCACGTAAAAATAGAGAATAGA 354
consensus_10395#1 GTGATTAGAAGGTTTCCAGACGCAGATTTCGCGCGCTAGCACGTAAAAATAAAGAATAGA 420
consensus_10395#2 ------------------------------------------------------------
consensus_10395#0 GTAGTCCTATTGATTGGAATAACTTTCCACTTCTATGAATGCTAGTATTTTGTTTTATTA 414
consensus_10395#1 GTAGTCCTATTGATTGGAATAACTTTCCACTTCTATGAATGCTAGTATTTTGTTTTATTA 480
consensus_10395#2 ---------------------------------TATGAAAGCTAGNAATTTGGTTTATTA 27
****** ***** * **** *******
consensus_10395#0 TTGGGGGGTAGTGCCGAACATTGAGGCTTCCCGACGACGCCTGTGAGAAGCTTCATGCTT 474
consensus_10395#1 TTGGGGGGTAGTGCCGAACATTGAGGCTTCCCGACGACGCCTGTGAGAAGCTTCATGCTT 540
consensus_10395#2 TTGGGGGGTAGTGCCGAACATTGAGG-TTCCCGACGACGCCTGTGAGAAGCTTCATGCTT 86
************************** *********************************
consensus_10395#0 CAATGGTTGTTTCTGACTCTGAGGGCTTGGTGCGGAGTGTTGCACTGGAGGAGGTAAAGC 534
consensus_10395#1 CAATGGTTGTTTCTGACTCTGAGGGCTTGGTGCGGAGTGTTGCACTGGAGGAGGTAAAGC 600
consensus_10395#2 CAATGGTTGTTTCTGACTCTGAGGGCTTGGTGCGGAGTGTTGCACTGGAGGAGGTAAAGC 146
************************************************************
consensus_10395#0 TGATGGTGCAGGAGCTGCTTCTTGTTTCTTCCCGCCAAATATATACCATTTTAAAAGCAG 594
consensus_10395#1 TGATGGTGCAGGAGCTGCTTCTTGTTTCTTCCCGCCAAATATATACCAT----------- 649
consensus_10395#2 TGATGGTGCAGGAGCTGCTTCTTGTTTCCTATGGAAGGAAA-ACATTGTGTAAAATA--- 202
**************************** * * * * * * *
consensus_10395#0 GACACAACATCAACGACATAAAGTGCCACAACATTATCCTAGTGCTATTATGAGTACTAA 654
consensus_10395#1 -------------------------------------CCTAGTGCTATTATGAGTACTAA 672
consensus_10395#2 -------------------------------------TACAATAATTTATTAACCAATTA 225
* * * * * * * * *
consensus_10395#0 TACAACGGCACCTATGATTATATTCATCTTCATATTTTTCCACCAAT-ATTTGTTTTTCA 713
consensus_10395#1 TACAACGGCACCTATGATTATATTCATCTTCATATTTTTCCACCAAT-ATTTGTTTTTCA 731
consensus_10395#2 TAAA----CATCTTT--TCATACTCAACATGTCAGTTTTATACCAGCGAGGTCACCTTTC 279
** * ** ** * * *** *** * * * **** **** * * **
consensus_10395#0 ATTTACCTGCACTGGCCTCGAACTGTGATGCGCCTGCCTGCAAAGCATCTGCTCGATCAT 773
consensus_10395#1 ATTTACCTGCACTGGCCTCGAACTGTGATGCGCCTGCCTGCAAAGCATCTGCTCGATCA- 790
consensus_10395#2 ATATACTTAGTGTGGTATATATCTCAAGGACTCACTCAT--------------------- 318
** *** * *** * * ** * * * *
consensus_10395#0 CCAACTGGCTAAGTTTAGCGTCGCGCTCCAGAACTTTCTCCATGTTTACTCGCATGATGT 833
consensus_10395#1 ------------------------------------------------------------
consensus_10395#2 ------------------------------------------------------------
consensus_10395#0 CTACTACTTCATCAACCTGAGCTTGGGTTTGTTGCAGGCGCTTGTTTTGTGGTCGTGGTT 893
consensus_10395#1 ------------------------------------------------------------
consensus_10395#2 ------------------------------------------------------------
consensus_10395#0 GAGGAGTTGCCCCATTAGCAACAGTGGCTCCTGCATCGGCTGACATCTTCGTAAACAGCT 953
consensus_10395#1 ------------------------------------------------------------
consensus_10395#2 ------------------------------------------------------------
consensus_10395#0 CAAAGATACCGCGTGCCAC 972
consensus_10395#1 -------------------
consensus_10395#2 -------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||