These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10397#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 1109 fasta sequence [TCATTGAGTTGTGTGAATTAGGTGATAAAAAAATCTATGAAAAAGTATCTCAACTATTTAAAAAGGAGAAAGAAATGAGAAAAGGTATTGCCTTTCCGACTGCAATCAGTGTAAATAATATGATACGTCACTACTCTCCCATTGATGAAGAAGAATCTGGCCCTACAGAAATAAAAACTGGAGATCTAGTTAAAATCGATGTTGGTGCCCATATAGACGGTTATGCCACTATAGTCGGACACACTTTTGTTGTTGGTGCAAGTCAGGACAATAAAATCACTGGCCGAAAAGCTGATGTTATACTGGCCGCACATGCAGCAGCGGAAGCTGTTATACGGCTATTAAGACCGGGAGTGGAGAACCTAAAGGCTTCAGAAATTGTAAGTAAAACTGTTATGGATTTTAACTGTCACGCCGTAGAAGGTATGCAGTGCCATCAAATGAAAAAACTTGTATATGACGCGGAAAAAAATATTGTTTTCAGTCCTACAGAAGAGCAGAAAAAGACGGTTGAAAAGTGTACTTTCG-ACATAAATGACGTATGGAATGTAGATATTATTGTATCGACGGGTGATGGTAGACCACGGGAACACAGCGCACGGACAACTTTGTTTAAGAAAAATGAAACTTTATACCAATTAAAAATGAAAGCCGCACGTCAGTTATATAGTGAGATTTCAAACAAATTCCTGGCATATCCATTTAGTTTACGTGCCTTCGATAATGTCAAAAGGGCTCGACTGGGTATTTCTGAGTGTATAAAACATGGGGTCATCGAACCACTTTCAGTTGTTTGTGAAAAAGATGACGAATTTGTTGCTCAATTCAGGTTTACCGTTTTGCTCATGCCCAATGGCCCAATGAAAGTCACCGGATTGACTTTCGATCCCTCTCTGTATAAATCCGAACACAAAGTCAAAGATCCAGAAATCAAGGATCTGCTTTTCCAACCTGTTAAGATTCAAAACAAAAAGAAAAAGCTTTTAAAACCAGAATCCGTTGGTAAAGTTTCAGCGTAGAAATCTTGTGCTGTTTGACTTTTAAATAAAGTTTTTCGGCGAAAAAAAAAATAAAATAAAAAATAACATGCCATGCAGCTGCATTACCGT] [-] EMBL CD156397 [TCATTGAGTTGTGTGAATTAGGTGATAAAAAAATCTATGAAAAAGTATCTCAACTATTTAAAAAGGAGAAAGAAATGAGAAAAGGTATTGCCTTTCCGACTGCAATCAGTGTAAATAATATGATACGTCACTACTCTCCCATTGATGAAGAAGAATCTGGCCCTACAGAAATAAAAACTGGAGATCTAGTTAAAATCGATGTTGGTGCCCATATAGACGGTTGTGCCACTATAGTCGGACACACTTTTGTTGTTGGTGCAAGTCAGGACAATAAAATCACTGGCCGAAAAGCTGATGTTATACTGGCCGCACATGCAGCAGCGGAAGCTGTTATACGGCTATTAAGACCGGGAGTGGAGAACCTAAAGGCTTCAGAAATTGTAAGTAAAACTGTTATGGATTTTAACTGTCACGCCGTAGAAGGTATGCAGTGCCATCAAATGAAAAAACTTGTATATGACGCGGAAAAAAATATTGTTTTCAGTCCTACAGAAGAGCAGGAAAAGACGGTTGAAAAGTGTACTTTCG ACATAAATGAC ] [-] EMBL CD156005 [ TTGTGTGAATTAGGTGATAAAAAAATCTATGAAAAAGTATCTCAACTATTTAAAAAGGAGAAAGAAATGAGAAAAGGTATTGCCTTTCCAACTGCAATCAGTGTAAATAATATGATACGTCACTACTCTCCCATTGATGAAGAAGAATCTGGCCCTACAGAAATAAAAACTGGAGATCTAGTTAAAATCGATGTTGGTGCCCATATAGACGGTTATGCCACTATAGTCGGACACACTTTTGTTGTTGGTGCAAGTCAGGACAATAAAATCACTGGCCGAAAAGCTGATGTTATACTGGCCGCACATGCAGCAGCGGAAGCTGTTATACGGCTATTAAGACCGGGAGTGGAGAACCTAAAGGCTTCAGAAATTGTAAGTAAAACTGTTATGGATTTTAACTGTCACGCCGTAGAAGGTATGCAGTGCCATCAAATGAAAAAACTTGTATATGACGCGGAAAAAAATATTGTTTTCAGTCCTACAGAAGAGCAGAAAAAGACGGTTGAAAAGTGTACTTTCGCACATAAATGAC ] [-] EMBL CD126153 [ TGTGAATTAGGTGATAAAAAAATCTATGAAAAAGTATCTCAACTATTTAAAAAGGAGAAAGAAATGAGAAAAGGTATTGCCTTTCCGACTGCAATCAGTGTAAATAATATGATACGTCACTACTCTCCCATTGATGAAGAAGAATCTGGCCCTACAGAAATAAAAACTGGAGATCTAGTTAAAATCGATGTTGGTGCCCATATAGACGGTTATGCCACTATAGTCGGACACACTCTTGTTGTTGGTGCAAGTCAGGACAAT AAATCACTGGCCGAAAAGCTGATG TATACTGc ] [+] EMBL AI977339 [ CTATTTAAAAAGGAGAAAGAAATGAGAAAAGGTATTGCCTTTCCGACTGCAATCAGTGTAAATAATATGATACGTCACTACTCTCCCATTGATGAAGAAGAATCTGGCCCTACAGAAATAAAAACTGGAGATCTAGTTAAAATCGATGTTGGTGCCCATATAGACGGTTATGCCACTATAGTCGGACACACTTTTGTTGTTGGTGCAAGTCAGGACAATAAAATCACTGGCCGAAAAGCTGATGTTATACTGGCCGCACATGCAGCAGCGGAAGCTGTTATACGGCTATTAAGACCGGGAGTGGAGAACCTAAAGGCTTCAGAAATTGTAAGTAAAACTGTTATGGATTTTAACTGTCACGCCGTAGAAGGTATGCAGTGCCATCAAATGAAAAAACTTGTATATGACGCGGAAAAAAATATTGTTTTCAGTCCTACAGAAGAGCAGAAAAAGACGGTTGAAAAGTGTACTTTCG ACATAAATGACGTATGGAATGTAGATATTATTGTATCGACGGGTGATGGTAGACCACGGGAACA ] [+] EMBL CD138214 [ ACACACTTTTGTTGTTGGTGCAAGTCAGGACAATAAAATCACTGGCCGAGAAGCTGATGTTATACTGGCC CGCATGCAGCAGCGGAAGCTGTTATACGGATATTAAGACCGGGAGTGGAGAACCTAAAGGCTTCAGAAATTGTAAGTAAAACTGTTATGGATTTTAACTGTCACGCCGTAGAAGGTATGCAGTGCCATCAAATGAAAAAACTTGTATATGACGCGGAAAAAAATATTGTTTTCAGTCCTACAGAAGAGCAGAAAAAGACGGTTGAAAAGTGTACTTTCG ACATAAATGACGTATGGAATGTAGATATTATTGTATCGACGGGTGATGGTAGACCACGGGAACACAGCGCACGGACAACTTTGTTTAAGAAAAATGAAACTTTATACCAATTAAAAATGAAAGCCGCACGTCAGTTATATAGTGAGATTTCAAACAAATTCCTGGCATATCCATTTAGTTTACGTGCCTTCGATAATGTCAAA ] [+] EMBL CD185629 [ TTGTTGTTGGTGCAAGTCAGGACAATAAAATCACTGGCCGAAAAGCTGATGTTATACTGGCCGCACATGCAGCAGCGGAAGCTGTTATACGGCTATTAAGACCGGGAGTGGAGAACCTAAAGGCTTCAGAAATTGTAAGTAAAACTGTTATGGATTTTAACTGTCACGCCGTAGAAGGTATGCAGTGCCATCAAATGAAAAAACTTGTATATGACGCGGAAAAAAATATTGTTTTCAGTCCTACAGAAGAGCAGAAAAAGACGGTTGAAAAGTGTACTTTCG ACATAAATGACGTATGGAATGTAGAT ] [+] EMBL CD185626 [ TTGTTGTTGGTGCAAGTCAGGACAATAAAATCACTGGCCGAAAAGCTGATGTTATACTGGCCGCACATGCAGCAGCGGAAGCTGTTATACGGCTATTAAGACCGGGAGTGGAGAACCTAAAGGCTTCAGAAATTGTAAGTAAAACTGTTATGGATTTTAACTGTCACGCCGTAGAAGGTATGCAGTGCCATCAAATGAAAAAACTTGTATATGACGCGGAAAAAAATATTGTTTTCAGTCCTACAGAAGAGCAGAAAAAGACGGTTGAAAAGTGTACTTTCG ACATAAATGACGTATGGAATGTAGAT ] [+] EMBL CD185633 [ TTGTTGTTGGTGCAAGTCAGGACAATAAAATCACTGGCCGAAAAGCTGATGTTATACTGGCCGCACATGCAGCAGCGGAAGCTGTTATACGGCTATTAAGACCGGGAGTGGAGAACCTAAAGGCTTCAGAAATTGTAAGTAAAACTGTTATGGATTTTAACTGTCACGCCGTAGAAGGTATGCAGTGCCATCAAATGAAAAAACTTGTATATGACGCGGAAAAAAATATTGTTTTCAGTCCTACAGAAGAGCAGAAAAAGACGGTTGAAAAGTGTACTTTCG ACATAAATGACGTATGGAATGTAGAT ] [+] EMBL CD126457 [ AACCTAAAGGCTTCAGAAATTGTAAGTAAAACTGTTATGGATTTTAACTGTCACGCCGTAGAAGGTATGCAGTGCCATCAAATGAAAAAACTTGTATATGACGCGGAAAAAAATATTGTTTTCAGTCCTACAGAAGAGCAGAAAAAGACGGTTGAAAAGTGTACTTTCG ACATAAATGGCGTATGGAATGTAAATATTATTGTATCGACGGGTGATGGTAGACCACGGGA ] [+] EMBL CD164019 [ GCTTCAGAAATTGTAAGTAAAACTGTTATGGATTTTAACTGTCACGCCGTAGAAGGTATGCAGTGCCATCAAGGGAAAAAACTTGTATATGACGCGGAAAAAAATATTGTTTTCAGTCCTACAGAAGAGCAGAAAAAGACGGTTGAAAAGTGTACTTTCG ACATAAATGACGTATGGAATGTAGATATTATTGTATCTACGG ] [+] EMBL BG931311 [ gtCACGGGAACACAGCGCACGGACAACTTTGTTTAAGAAAAATGAAACTTTATACCAATTAAAAATGAAAGCCGCACGTCAGTTATATAGTGAGATTTCAAACAAATTCCTGGCATATCCATTTAGTTTACGTGCCTTCGATAATGTCAAAAGGGCTCGACTGGGTATTTCTGAGTGTATAAAACATGGGGTCATCGAACCACTTTCAGTTGTTTGTGAAAAAGATGACGAATTTGTTGCTCAATTCAGGTTTACCGTTTTGCTCATGCCCAATGGCCCAATGAAAGTCACCGGATTGACTTTCGATCCCTCTCTGTATAAATCCGAACACAAAGTCAAAGA ] [+] EMBL BG931312 [ gtCACGGGAACACAGCGCACGGACAACTTTGTTTGAGAAAAATGAAACTTTATACCAATTAAAAATGAAAGCCGCACGTCAGTTATATAGTGAGATTTCAAACAAATTCCTGGCATATCCATTTAGTTTACGTGCCTTCGATAATGTCAAAAGGGCTCGACTGGGTATTTCTGAGTGTATAAAACATGGGGTCATCGAACCACTTTCAGTTGTTTGTGAAAAAGATGACGAATTTGTTGCTCAATTCAGGTTTACCGGTTTGCTCATGCCCAATGGCCCAATGAAAGTCAACGGATTGACTTTCGATCCCTCTCTGTATAAATCCGAACACAAAGTCAAAGAT ] [+] EMBL CD169893 [ AACACAGCGCACGGACAACTTTGTTTAAGAAAAATGAAACTTTATACCAATTAAAAATGAAAGCCGCACGTCAGTTATATAGTGAGATTTCAAACAAATTCCTGGCATATCCATTTAGTTTACGTGCCTTCGATAATGTCAAAAGGGCTCGACTGGGTA ] [-] EMBL AI976802 [ GTGTATAAAACATGGGGTCATCGAACCACTTTCAGTTGTTTGTGAAAAACATGACGAATTTGTTGCTCAATTCAGGTTGACCGTATTGCTCATGCCCAATGGCCCAATGAGAGTCACCGGATTGACATTCGATCCCTCTCTGAATAAATCCGAACACAAAGTCAAAGTCCCAGAAATCAAGGATCTGCTTTTCCAACCTGTTAAGATTCAAAACAAAAAGAAAAAGCTTTTAAAACCAGAATCCGTTGGTAAAGTTTCAGCGTAGAAATCTTGTGCTGTTTGACTTTTAAATAAAGTTTTTCGGCGAAAAAAAAAATAAAATAAAAAATAACATGCCATGCAGCTGCATTACCGT] consensusID : consensus_10397#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 362 fasta sequence [TGGGCCGGCCCGGTCTGGGGCACAGACAACTTTGTTTAAAAAAAATGAAACTTTATACCATTTAAAAATGAAAGCCGCACGTCGTTAGTGTACTATTATTTACAAATTGTAGCTTTAGAGTTATATAGTGAGATGGGAAACAAATTCCTGGCATATCCATTTAGTTTACGGTAATTGAGTTATTTCAATAACCATTGTACATCGTTTTAGTGCCTTCGATAATGTCAAAAGGGCTCGACTGGGTATTTCTGAGTGTATAAAACATGGGGTCATCGAACCACTTTCAGTTGTTTGTGAAAAAGATGGTATTTCTATTAATTTATGTCCTACGTTGTAAACGAATTGGTCGCTCAATTCAGGTT] [+] EMBL CD200818 [TGGGCCGGCCCGGTCTGGGGCACAGACAACTTTGTTTAAAAAAAATGAAACTTTATACCATTTAAAAATGAAAGCCGCACGTCGTTAGTGTACTATTATTTACAAATTGTAGCTTTAGAGTTATATAGTGAGATGGGAAACAAATTCCTGGCATATCCATTTAGTTTACGGTAATTGAGTTATTTCAATAACCATTGTACATCGTTTTAGTGCCTTCGATAATGTCAAAAGGGCTCGACTGGGTATTTCTGAGTGTATAAAACATGGGGTCATCGAACCACTTTCAGTTGTTTGTGAAAAAGATGGTATTTCTATTAATTTATGTCCTACGTTGTAAACGAATTGGTCGCTCAATTCAGGTT] consensusID : consensus_10397#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 286 fasta sequence [AAAAAATCTATGAAAAAGTATCTCAACTATTTAAAAAGGAGAAAGAAATGAGAAAAGTGTAAATAATATGATACGTCACTACTCTCCCATTGATGAAGAAGAATCTGGCCCTACAGAAATAAAAACTGGAGATCTAGTTAAAATCGATGTTGGTGCCCATATAGACGGTTATGCCACTATAGTCGGACACACTTTTGTTGTTGGTGCAAGTCAGGACAATAAAATCACTGGCCGAAAAGCTGATGTTATACTGGCCGCACATGCAGCAGCGGAAGCTGTTATACGG] [-] EMBL CD183589 [AAAAAATCTATGAAAAAGTATCTCAACTATTTAAAAAGGAGAAAGAAATGAGAAAAGTGTAAATAATATGATACGTCACTACTCTCCCATTGATGAAGAAGAATCTGGCCCTACAGAAATAAAAACTGGAGATCTAGTTAAAATCGATGTTGGTGCCCATATAGACGGTTATGCCACTATAGTCGGACACACTTTTGTTGTTGGTGCAAGTCAGGACAATAAAATCACTGGCCGAAAAGCTGATGTTATACTGGCCGCACATGCAGCAGCGGAAGCTGTTATACGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10397#0 TCATTGAGTTGTGTGAATTAGGTGATAAAAAAATCTATGAAAAAGTATCTCAACTATTTA 60 consensus_10397#2 ---------------------------AAAAAATCTATGAAAAAGTATCTCAACTATTTA 33 consensus_10397#1 ---TGGGCCGGCCCGGTCTGGGGCACAGACAACTTTGTTTAAAAAAAATGAAACTTTATA 57 * ** * * * **** * **** * ** consensus_10397#0 AAAAGGAGAAAGAAATGAGAAAAGGTATTGCCTTTCCGACTGCAATCAGTGTAAATAATA 120 consensus_10397#2 AAAAGGAGAAAGAAATGAGAAAAG-------------------------TGTAAATAATA 68 consensus_10397#1 CCATTTAAAAATGAAAGCCGCACGTCGTTAGTGTACT----------ATTATTTACAAAT 107 * * *** ** * * * * * * ** consensus_10397#0 TGATACGTCACTACTCTCCCATT-GATGAAGAAGAA--TCTGGCCCTACAGAAATAAAAA 177 consensus_10397#2 TGATACGTCACTACTCTCCCATT-GATGAAGAAGAA--TCTGGCCCTACAGAAATAAAAA 125 consensus_10397#1 TGTAGCTTTAGAGTTATATAGTGAGATGGGAAACAAATTCCTGGCATATCCATTTAGTTT 167 ** * * * * * * **** ** ** ** * * ** * ** consensus_10397#0 CTGGAGATCTAGTTAA------AATCGATGT---TGGTGCCCATATAGACGGTTATGCCA 228 consensus_10397#2 CTGGAGATCTAGTTAA------AATCGATGT---TGGTGCCCATATAGACGGTTATGCCA 176 consensus_10397#1 ACGGTAATTGAGTTATTTCAATAACCATTGTACATCGTTTTAGTGCCTTCGATAATGTCA 227 ** ** ***** ** * *** * ** * ** * *** ** consensus_10397#0 CTATAGTCGGACACACTTTTGTTGTTGGTGCAAGTCA--GGACAATAAAATCACTGGCCG 286 consensus_10397#2 CTATAGTCGGACACACTTTTGTTGTTGGTGCAAGTCA--GGACAATAAAATCACTGGCCG 234 consensus_10397#1 AAAGGGCTCGACTGGGTATTTCTGAGTGTATAAAACATGGGGTCATCGAACCACTTTCAG 287 * * *** * ** ** ** ** ** ** ** ** **** * * consensus_10397#0 ----------AAAAGCTGATGTTATACTGGCCGCACATGCAGCAGCGGAAGCTGTTATAC 336 consensus_10397#2 ----------AAAAGCTGATGTTATACTGGCCGCACATGCAGCAGCGGAAGCTGTTATAC 284 consensus_10397#1 TTGTTTGTGAAAAAGATGGTATTTCTATTAATTTATGTCCTACGTTGTAAACGAATTGGT 347 ***** ** * ** * * * * * * ** * * consensus_10397#0 GGCTATTAAGACCGGGAGTGGAGAACCTAAAGGCTTCAGAAATTGTAAGTAAAACTGTTA 396 consensus_10397#2 GG---------------------------------------------------------- 286 consensus_10397#1 CGCTCAATTCAGGTT--------------------------------------------- 362 * consensus_10397#0 TGGATTTTAACTGTCACGCCGTAGAAGGTATGCAGTGCCATCAAATGAAAAAACTTGTAT 456 consensus_10397#2 ------------------------------------------------------------ consensus_10397#1 ------------------------------------------------------------ consensus_10397#0 ATGACGCGGAAAAAAATATTGTTTTCAGTCCTACAGAAGAGCAGAAAAAGACGGTTGAAA 516 consensus_10397#2 ------------------------------------------------------------ consensus_10397#1 ------------------------------------------------------------ consensus_10397#0 AGTGTACTTTCGACATAAATGACGTATGGAATGTAGATATTATTGTATCGACGGGTGATG 576 consensus_10397#2 ------------------------------------------------------------ consensus_10397#1 ------------------------------------------------------------ consensus_10397#0 GTAGACCACGGGAACACAGCGCACGGACAACTTTGTTTAAGAAAAATGAAACTTTATACC 636 consensus_10397#2 ------------------------------------------------------------ consensus_10397#1 ------------------------------------------------------------ consensus_10397#0 AATTAAAAATGAAAGCCGCACGTCAGTTATATAGTGAGATTTCAAACAAATTCCTGGCAT 696 consensus_10397#2 ------------------------------------------------------------ consensus_10397#1 ------------------------------------------------------------ consensus_10397#0 ATCCATTTAGTTTACGTGCCTTCGATAATGTCAAAAGGGCTCGACTGGGTATTTCTGAGT 756 consensus_10397#2 ------------------------------------------------------------ consensus_10397#1 ------------------------------------------------------------ consensus_10397#0 GTATAAAACATGGGGTCATCGAACCACTTTCAGTTGTTTGTGAAAAAGATGACGAATTTG 816 consensus_10397#2 ------------------------------------------------------------ consensus_10397#1 ------------------------------------------------------------ consensus_10397#0 TTGCTCAATTCAGGTTTACCGTTTTGCTCATGCCCAATGGCCCAATGAAAGTCACCGGAT 876 consensus_10397#2 ------------------------------------------------------------ consensus_10397#1 ------------------------------------------------------------ consensus_10397#0 TGACTTTCGATCCCTCTCTGTATAAATCCGAACACAAAGTCAAAGATCCAGAAATCAAGG 936 consensus_10397#2 ------------------------------------------------------------ consensus_10397#1 ------------------------------------------------------------ consensus_10397#0 ATCTGCTTTTCCAACCTGTTAAGATTCAAAACAAAAAGAAAAAGCTTTTAAAACCAGAAT 996 consensus_10397#2 ------------------------------------------------------------ consensus_10397#1 ------------------------------------------------------------ consensus_10397#0 CCGTTGGTAAAGTTTCAGCGTAGAAATCTTGTGCTGTTTGACTTTTAAATAAAGTTTTTC 1056 consensus_10397#2 ------------------------------------------------------------ consensus_10397#1 ------------------------------------------------------------ consensus_10397#0 GGCGAAAAAAAAAATAAAATAAAAAATAACATGCCATGCAGCTGCATTACCGT 1109 consensus_10397#2 ----------------------------------------------------- consensus_10397#1 ----------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||