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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10408#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 758 fasta sequence
[ATAATCATTTGTGCTGTGAAAACTATTCTTATTACTATAGAAAGCAAAATAAACACATGTAATTAGTTCATGCCAATATTTACCATATTGTAAAAGAAAACACAGGGGAGTACTTTTCTGATTGCGTAACGTTATAATAGCTATCACAGTTAGCACCAGAAATTTAAGTTTTCAAAATTTTTTATGATAAAATTTTCGAAAGACAATAACCAAAGGAAGCATAAATATAATAAATTAATTAACACAGTAA-CAAAGGAAATACGCACATCAGAGGTGTAAATAACGTATAATAGGAGGGAAAAATCCGTATAAGCGCATACATTTTGCCACAACAATGTGATGTTCAAGCATCCGTAACTTGACCAG-T-CTTCTTCGATATTGTATCTGGATTACCGATCGGCCCAAGATCAGAAAACAGATTTAACCAAGCATCTAGATTTGTGGGCTGTTGGGATGACAATGACTTTGGGGTATTTGAAACGGTACCCAGAGTGTTTTCACC-TTTTTTTAACTGCTGTTCGGATTGGTTGTTATTATTACTAAATGCAGAAGTATTCACGTTAGCACACT-CCAAAGATGA-TTTCA-CCGATTGAGTAACAATTGAATTAGAAGTGTCTGGATTAAATAAATTTTGGAATTCCTGTTCTAATAAGTGTGAGGGAAGTATAGGTGTCCTGAATGTATCTTTTGACCCTACACTCTGCAAGGGTCCGAAATCCTCATTTTGGCAAGGCTGATTCAAATCGCTAAAGACAGCT]
[-] EMBL AW017039 [ATAATCATTTGTGCTGTGAAAACTATTCTTATTACTATAGAAAGCAAAATAAACACATGTAATTAGTTCATGCCAATATTTACCATATTGTAAAAGAAAACACAGGGGAGTACTTTTCTGATTGCGTAACGTTATAATAGCTATCACAGTTAGCACCAGAAATTTAAGTTTTCAAAATTTTTTATGATAAAATTTTCGAAAGACAATAACCAAAGGAAGCATAAATATAATAAATTAATTAACACAGTAA CAAAGGAAATACGCACATCAGAGGTGTAAATAACGTATAATAGGAGGGAAAAATCCGTATAAGCGCATACATTTTGCCACAACAATGTGATGTTCAAGCATCCGTAACTTGACCAG T CTTCTTCGATATTGTATCTGGATTACCGATCGGCCCAAGATCAGAAAACAGATTTAACCAAGCATCTAGATTTGTGGGCTGTTGGGATGACAATGACTTTGGGGTATTTGAAACGGTACCCAGAGTGTTTTCACC TTTTTTTAACTGCTGTTCGGATTGGTTGTTATTATTACTAAATGCAGAAGTATTCACGTTA ]
[+] EMBL CD076936 [ ATGCCAATATTTACCAAATTGTAAAAG AAACACAGGGGAGTACTTTTCTGATTGCGTAACGTTATAATAGCTATCACAGTTAGCACCAGAAATTTAAGTTTTCAAAAATTTTTATGATAAAATTTTCAAAAGACAAAAACCAAAGGAAGCATAAATATAATAAATTAATTAACACAGTAA CAAAGGAAATACGCACATCAGAGGTGTAAATAACGTATAATAGGAGGGAAAAATCCGTATAAGCGCATACATTTTGCCACAACAATGTGATGTTCAAGCATCCGTAACTTGACCAG T CTTCTTCGATATTGTATCTGGATTACCGATCGGCCCAAGATCAGAAAACAGATTTAACCAAGCATCTAGATTTGTGGGCTGTTGGGATGACAATGACTTTGGGGTATTTGAAACGGTACCCAGAGTGTTTTCACC TTTTTTTAACTGCTGTTCGGATTGGTTGTTATTATTACTAAATGCAGAAGTATTCACGTTAGCACACT CCAAAGATGA TTTCA CCGATTGAGTAACAATTGAATTAGAAGTGTCTGGATTAAATAAATTTTGGAATTCCTGTTCTAATAAGTGTGAGGGAAGTATAGGTGTC ]
[-] EMBL AI111082 [ ccnAAGGGAGGCATAAATATATNAAATTAATTAACACAGTAACCAAAGG AATACGCACATCAGAGGTGTAAATAACGTATAATAGGAGGG AAAATCCGTATAAGCGCATACATTTTGCCACAACAATGTGANGTTCAAGCATCCGTAACTTGACCAG T CTTTTTCGANATTGTATCTGGATTACCGATCGGCCCAAGATCAGAAAACAGATTTAACCAAGCATCTAGATTTGTGGGCTGTTGGGANGACAANGACTTTGGGGTATTTGAAACGGTACCCAGAGTGTTTTCACC TTTTTTTAACTGCTGTTCGGATTGGTTGTTATTATTACTAAATGCAGAAGTATTCANGTTAGCACACTCCCAAAGATGANTTTCACCCGATGGAGTAACAATTGAATTAGAAGTGTNTGGATTAAATAAATTTTGGAATTCCTGTTNTAATAAGTGTGAGGGAAGTATAGGTGTCCTGAANGTATCTTTTGACCCTACACTCTGCAAGGGTCCGAAATCCTCATTTTGGCAAGGCTGATTCAAATCGCTAAAGACAGC ]
[-] EMBL CD192626 [ ATAACGTATAATAGGAGGGAAAAATCCGTATAAGCGCATACATTTTGCCACAACAATGTGATGTTCAAGCATCCGTAACTTGACCAG T CTTCTTCGATATTGTATCTGGATTACCGATCGGCCCAAGATCAGAAAACAGATTTAACCAAGCATCTAGATTTGTGGGCTGTTGGGATGACAATG ]
[-] EMBL CD192629 [ ATAACGAATAATAGGAGGGAAAAATCCGTATAAGCGCATACATTTTGCCACAACAATGTGATGTTCAAGCATCCGTAACTTGACCAG T CTTCTTCGATATTGTATCTGGATTACCGATCGGCCCAAGATCAGAAAACAGATTTAACCAAGCATCTAGATTTGTGGGCTGTTGGGATGACAATG ]
[-] EMBL CD192383 [ ATAACGTATAATAGGAGGGAAAAATCCGTATAAGCGCATACATTTTGCCACAACAATGTGATGTTCAAGCATCCGTAACTTGACCAG T CTTCTTCGATATTGTATCTGGATTACCGATCGGCCCAAGATCAGAAAACAGATTTAACCAAGCATCTAGATTTGTGGGCTGTTGGGATGACAATG ]
[-] EMBL CD192242 [ ATAACGTATAATAGGAGGGAAAAATCCGTATAAGCGCATACATTTTGCCACAACAATGTGATGTTCAAGCATCCGTAACTTGACCAG T CTTCTTCGATATTGTATCTGGATTACCGATCGGCCCAAGATCAGAAAACAGATTTAACCAAGCATCTAGATTCGTGGGCTGTTGGGATGACAATG ]
[-] EMBL CD192291 [ ATAACGTATAATAGGAGGGAAAAATCCGTATAAGCGCATACATTCTGCCACAACAATGTGATGTTCAAGCATCCGTAACTTGACCAG T CTTCTTCGATATTGTATCTGGATTACCGATCGGCCCAAGATCAGAAAACAGATTTAACCAAGCATCTAGATTTGTGGGCTGTTGGG ]
[-] EMBL AI111106 [ GAGGG AAAATCCGTATAAGCGCATACATTTGGCCACAACAAAGTGATGTTCAAGCATCCGTAACTTGACCAG T TTTTTCGATATNGTATCTGGATNACCGATCGGCCCAAGATCAGAAAACAGATTTAACCAAGCATCTAGATTTGTGGGCTGTTGGGATGACAATGACTTTGGGGTATTTGAAACGGTACCCAGAGTGTTTTCACC TTTTTTTAACTGCTGTTCGGATTGGTTGTTATTATTACTAAATGCAGAAGTATTCACGTTAGCACACT CCAAAGATGA TTTCA CCGATTGAGTAACAATTGAATTAGAAGTGTCTGGATTAAATAAATTTTGGAATTCCTGTTCTNATA ]
[-] EMBL AI111150 [ TAAGCGCATACATTTTGCCACAACAANGTGANGTTNAAGCATCCGTAACTTGACCAG TNTTTTTTCGATATTGTATTTGGATTACCGATCGGCCCAAGATCAGNAAACAGATTTAACCAAGCATCTAGATTTGTGGGCTGTTGGGATGACAATGACTTTGGGGTATTTGAAACGGTACCCAGAGTGTTTTCACC TTTTTTTAACTGCTNTTTGGNNTGGTTGTTATTATTACTAAATGCAGAAGTATTCACGTTAGCACACT CCAAAGATGA TTTCA CCGATTGAGTAACAATTGAATTAGAAGTGTTTGGATTAAATAAATTTTGGAATTCCTGTTCTAATAAGTGTGAGGGAAGTATAGGTGTCCTGAATGTATNTTTTGACCCTACACTCTGCAAGGGTCCGAAATCCTCATTTTGGCAAGGCTGATTCAAATCGCTAAAGACAGCT]
[-] EMBL AI111001 [ CAAGCATCCGTAACTTGACCAGTT TTTTTTCGATATTGTATNTGGATTACCGATCGGCCCAAGATCAGAAAACAGATTTAACCAAGCATCTAGATTTGTGGGCTGTTGGGATGACAANGACTTTGGGGTATTTGAAACGGTACCCAGAGTGTTTTCACC TTTTTTTAACTGCTGTTCGGATTGGTTGTTATTATTACTAAATGCAGAAGTATTCACGTTAGCACACT CCAAAGATGA TTTCA CCGATTGAGTAACAATTGAATTAGAAGTGTNTGGATTAAATAAATTTTGGAATTCCTGTTCTAATAAGTGTGAGGGAAGTATAGGTGTCCTGAATGTATCTTTTGACCCTACACTCTGCAAGGGTCCGAAATCCTCATTTTGGCAAGGCTGATTCAAATCGCTAAAGACAGC ]
[+] EMBL CD063049 [ tCCAT T CTTCTTCGATATTGTATCTGGATTACCGATCGGCCCAAGATCAGAAAACAGATTTAACCAAGCATCTAGATTTGTGGGCTGTTGGGATGACAATGACTTTGGGGTATTTGAAACGGTACCCAGAGTGTTTTCACCTTTTTTTTAACTGCTGTTCGGATTGGTTGTTATTATTACTAAATGCAGAAGTATTCACGTTAGCACACT CCAAAGATGA TTTCA CCGATTGAGTAACAATTGAATTAGAAGTGTCTGGATTAAATAAATTTTGGAATTCCTGTTCTAATAAGTGTGAGGGAAGTATAGGTGTCCTGAATGTATCTTTTGACCCTACACTCTGCAAGG ]
[-] EMBL CD190334 [ TCTGGATTACCGATCGGCCCAAGATCAGAAAACAGATTTAACCAAGCATCTAGATTTGTGGGCTGTTGGGATGACAATGACTTTGGGGTATTTGAAACGGTACNCAGAGTGTTTTCACC TTTTTTTAACTGCTGTTCGGATTGGTTGTTATTATTACTAAATGCAGAAGTATTCACGTTAGCACACT CCTAAGATGA TTTCA CCGATTGAGTAACAATTGAATTAGAAGTGTCTGGATTAAATAAATTTTGGAATTCCTGTTCTAATAAGTGTGAGGGAAGTATAGGTGTCCTGAATGTATCTTTTGACCCTACACTCTGCAAGGGTCCGAAATCCTCATTTTGGCAAGGCTGATTCAAATCGCTAAAGAC ]
[-] EMBL AI111098 [ CAAGCATCTAGATTTGTGGGCTGTTGGGATGACAATGACTTT GGGTATTTGAAACGGTACCCAGAGTGTTTTCACC TTTTTTTAACTGCTGTTCGGATTGGTTGTTATTATTACTAAATGCAGAAGTATTCACGTTAGCACACT CCAAAGATGA TTTCA CCGATTGAGTAACAATTGAATTAGAAGTGTCTGGATTAAATAAATTTTGGAATTCCTGTTCTAATAAGTGTGAGGGAAGTATAGGTGTCCTGAATGTATCTTTTGACCCTACACTCTGCAAGGGTCCGAAATCCTCATTTTGGCAAGGCTGATTCAAATCGCTAAAGACAGC ]
consensusID : consensus_10408#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 372 fasta sequence
[CATAAATATAATAAATTAATTAACACAGTAACAAAGGAAATACCCCCATCAGAGGTGTAAATAACGTTTTTTTGGAGGGAAAAATCCGTATAAGCGCATACATTTTGCCACAACAATGTGATGTTCATTTTTCCGTAACTGGACCAGTCTTCTTCGATATTGTATTTGGATTACCGATCGGCCCAAGATCAAAAAACAGATTTAACCAACCATCTAAATTTGGGGGCTATTGTAAATTCGAATTATAAAAAAAAAAATGCAGTGGTGAAAAAATGTCTGAAAATCATAACTACTACTGCAAAGGGGATAATAGTAATGACAGTTAAACTGAGACAGTCAAAAAAAATCATCAAAATTGACCAACCATATATT]
[+] EMBL CD073181 [CATAAATATAATAAATTAATTAACACAGTAACAAAGGAAATACCCCCATCAGAGGTGTAAATAACGTTTTTTTGGAGGGAAAAATCCGTATAAGCGCATACATTTTGCCACAACAATGTGATGTTCATTTTTCCGTAACTGGACCAGTCTTCTTCGATATTGTATTTGGATTACCGATCGGCCCAAGATCAAAAAACAGATTTAACCAACCATCTAAATTTGGGGGCTATTGTAAATTCGAATTATAAAAAAAAAAATGCAGTGGTGAAAAAATGTCTGAAAATCATAACTACTACTGCAAAGGGGATAATAGTAATGACAGTTAAACTGAGACAGTCAAAAAAAATCATCAAAATTGACCAACCATATATT]
consensusID : consensus_10408#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 306 fasta sequence
[TCATTAATCATTTGTAGGTGATCTTGAACAAGAACTGAAAACAGTAATGGTATCATTGAGAATAGGAAGTACTAGGAAGCCGTTCCAATTCAGTATAGGACTCCTCAGGTATGTGTACCGGCGACTCTGTTGGGATGACAATGACTTTGGGGTATTTGAAACGGTACCCAGAGTGTTTTCACCTTTTTTTAACTGCTGTTCGGATTGGTTGTTATTATTACTAAATGCAGAAGTATTCACGTTAGCACGCTCCAAAGATGATTTCACCGATTGAGTAACAATTGAATTAGAAATGTCTGGATTAAA]
[-] EMBL BG930362 [TCATTAATCATTTGTAGGTGATCTTGAACAAGAACTGAAAACAGTAATGGTATCATTGAGAATAGGAAGTACTAGGAAGCCGTTCCAATTCAGTATAGGACTCCTCAGGTATGTGTACCGGCGACTCTGTTGGGATGACAATGACTTTGGGGTATTTGAAACGGTACCCAGAGTGTTTTCACCTTTTTTTAACTGCTGTTCGGATTGGTTGTTATTATTACTAAATGCAGAAGTATTCACGTTAGCACGCTCCAAAGATGATTTCACCGATTGAGTAACAATTGAATTAGAAATGTCTGGATTAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10408#0 ATAATCATTTGTGCTGTGAAAACTATTCTTATTACTATAGAAAGCAAAATAAACACATGT 60
consensus_10408#2 ------------------------------------------------------------
consensus_10408#1 ------------------------------------------------------------
consensus_10408#0 AATTAGTTCATGCCAATATTTACCATATTGTAAAAGAAAACACAGGGGAGTACTTTTCTG 120
consensus_10408#2 ------------------------------------------------------------
consensus_10408#1 ------------------------------------------------------------
consensus_10408#0 ATTGCGTAACGTTATAATAGCTATCACAGTTAGCACCAGAAATTTAAGTTTTCAAAATTT 180
consensus_10408#2 ------------------------------------------------------------
consensus_10408#1 ------------------------------------------------------------
consensus_10408#0 TTTATGATAAAATTTTCGAAAGACAATAACCAAAGGAAGCATAAATATAATAAATTAATT 240
consensus_10408#2 ------------------------------------------------------------
consensus_10408#1 ------------------------------------------------------------
consensus_10408#0 AACACAGTAACAAAGGAAATACGCACATCAGAGGTGTAAATAACGTATAATAGGAGGGAA 300
consensus_10408#2 ------------------------------------------------------------
consensus_10408#1 ----------------------------------------------------------CA 2
consensus_10408#0 AAATCCGTATAAGCGCATACAT-TTTGCCACAACAATGTGA-TGTTCAAGCATCCGTAAC 358
consensus_10408#2 --------------TCATTAAT-CATTTGTAGGTGATCT---TGAACAAGAACTGAAAAC 42
consensus_10408#1 TAAATATAATAAATTAATTAACACAGTAACAAAGGAAATACCCCCATCAGAGGTGTAAA- 61
** * * * ** **
consensus_10408#0 TTGACCAGTCTTCTTCGATATTGTATCTGGATTAC-CGATCGGCCCAAGATCAGAAAACA 417
consensus_10408#2 AGTAATGGTATCATTGAGAATAGGAA--GTACTAG-GAAGCCGTTCCAATTCAGT--ATA 97
consensus_10408#1 --TAACGTTTTTTTGGAGGGAAAAATCCGTATAAGCGCATACATTTTGCCACAACA-ATG 118
* * * * * * * * * ** *
consensus_10408#0 GATTTAACCAAGCATCTAGATTTGTGGG-CTGTTGGGATGACAATGACTTTGGGGTAT-- 474
consensus_10408#2 GGACTCCTCAGGTATGTGTACCGGCGACTCTGTTGGGATGACAATGACTTTGGGGTAT-- 155
consensus_10408#1 TGA-TGTTCATTTTTCCGTAACTG-GACCAGTCTTCTTCGATATTGTATTTGGATTACCG 176
* ** * * * * * ** * ** ***** **
consensus_10408#0 -TTGAAACGGTACCCAGAGT--GTTTTCACCTTTT-TTTAACTGCTGTTCGGATTGGTTG 530
consensus_10408#2 -TTGAAACGGTACCCAGAGT--GTTTTCACCTTTT-TTTAACTGCTGTTCGGATTGGTTG 211
consensus_10408#1 ATCGGCCCAAGATCAAAAAACAGATTTAACCAACCATCTAAATTTGGGGGCTATTGTAAA 236
* * * * * * * * *** *** * *** * * ****
consensus_10408#0 TTATTATTACTAAATGCAGAA-GTATTCACGTTAGCACACTCCAAAGATGATTTCACCGA 589
consensus_10408#2 TTATTATTACTAAATGCAGAA-GTATTCACGTTAGCACGCTCCAAAGATGATTTCACCGA 270
consensus_10408#1 TTCGAATTATAAAAAAAAAAATGCAGTGGTGAAAAAATG-TCTGAAAATCATAACTACTA 295
** **** *** * ** * * * * * * ** ** ** ** * * *
consensus_10408#0 TTGAGTAACAATTGA-ATTAGAAGTGTCTGGATTAAATAAATTTTGGAATTCCTGTTCTA 648
consensus_10408#2 TTGAGTAACAATTGA-ATTAGAAATGTCTGGATTAAA----------------------- 306
consensus_10408#1 CTGCAAAGGGGATAATAGTAATGACAGTTAAACTGAGACAGTCAAAAAAAATCATCAAAA 355
** * * * * ** * * * *
consensus_10408#0 ATAAGTGTGAGGGAAGTATAGGTGTCCTGAATGTATCTTTTGACCCTACACTCTGCAAGG 708
consensus_10408#2 ------------------------------------------------------------
consensus_10408#1 TTGACCAACCATATATT------------------------------------------- 372
consensus_10408#0 GTCCGAAATCCTCATTTTGGCAAGGCTGATTCAAATCGCTAAAGACAGCT 758
consensus_10408#2 --------------------------------------------------
consensus_10408#1 --------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||