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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10410#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 849 fasta sequence
[ACTTACATGGTACTCGTCGTATTCGACGATTACCTACAAAACCTATGTATTAACAGAAGAACGAAACATGATGAGCATTTCTGCAAACAAGTAAAAATAAATAGAAAAATTAAAATGCCATTGCATGATTGACATTTTTATTCGAAACAGAAAGTAGGGTGCAGATGCATTCAAGCTATACTAATATGCTACAGTGACAGAGTAACAAAATGACATGCATCGAAATGCTGATGTGTAACAGTGAAATGAGTGGTTGTGCTCTATGAAACATCACTCACTATGAATAATGAGGAGTCGATCGACGAACACTGTTTGTACCTCAATATGTGAGTGTGTTCACAGTGATCACTTCAAGTTATTGAATCGCTGAAGAATTGCAAACAACTCCCATACCGACAATCATAACACACTGAATTATTTTATTTATTACGGACAAACTTGCAGTCTATCATTCACTGCATTGAGAAAATCAAAATTGTCTACGCGTTCGTGAGCGTTTCGCTTGTTCACCATGAGACGCTCAATGATGTACACAATCTGTGCATGTTGAAGCACTCGAATGGAAATGGTTGCAAAGAAAATGATTGAGTAAACAATGAACAGATGGAACGGAATACGATGATTGTGACCACATTTCTGTAAAGCTAGATGTTCGATGAATATGAAAGTGATAATCCGTTGAGTTAAACATAAAGCACGACTGACATAGAGATAGATGTGTGTGTATGCTTACTGAGGAATGTGGACAACTTCGAGTTCGACAATGGAATGTTCCATGGAAATTGTATGAGAGTGTGATGAATGAAACCTGTTTGTTATAATGACAAATCGAAAATTGTTTGGATTGTA]
[+] EMBL CD121260 [ACTTACATGGTACTCGTCGTATTCGACGATTACCTACAAAACCTATGTATTAACAGAAGAACGAAACATGATGAGCATTTCTGCAAACAAGTAAAAATAAATAGAAAAATTAAAATGCCATTGCATGATTGACATTTTTATTCGAAACAGAAAGTAGGGTGCAGATGCATTCAAGCTATACTAATATGCTACAGTGACAGAGTAACAAAATGACATGCATCGAAATGCTGATGTGTAACAGTGAAATGAGTGGTTGTGCTCTATGAAACATCACTCACTATGAATAACGAGGAGTCGATCGACGAACACTGTTTGTACCTCAATATGTGAGTGTGTTCACAGTGATCACTTCAAGTTATTGAATCGCTGAAGAATTGCAAACAACTCCCATACCGACAATCATAACACACTGAATTATTTTATTTATTACGGACAAACTTGCAGTCTATCATTCACTGCATTGAGAAAATCAAAATTGTCTACGCGTTCGTGAGCGTTTCGCTTGTTCACCATGAGACGCTCAATGATGTACACAATCTGTGCATGTTGAAGCACTCGAAATGTAATGTTTGCAAAGAAAATGATTGAGTAAACA ]
[+] EMBL CD121191 [ACTTACATGGTACTCGTCGTATTCGACGATTACCTACAAAACCTACGTATTAACAGAAGAACGAAACATGATGAGCATTTCTGCAAACAAGTAAAAATAAATAGAAAAATTAAAATGCCATTGCATGATTGACATTTTTATTCGAAACAGAAAGTAGGGTGCAGATGCATTCAAGCTAAACTAATATGCTACAGTGACAGAGTAACAAAATGACATGCATCGAAATGCTGATGTGTAACAGTGAAGTGAGTGGTTGTGCTCTATGAAACATCACTCACTATGAATAATGAGGAGTCGATCGACGAACACTGTTTGTACCTCAATATGTGAGTGTGTTCACAGTGATCACTTCAAGTTATTGAATCGCTGAAGAATTGCAAACAACTCCCATACCGACAATCATAACACACTGAATTATTTTATTTATTACGGACAAACTTGCAGTCTATCATTCACTGCATTGAGAAAATCAAAATTGTCTACGCGTTCGTGAGCGTTTCGCTTGGTCACCATGAGACGCTCAATGATGTACANCATCTGTGCATGTTGAAGCACTCGAATGTANATG ]
[-] EMBL CD121219 [ ACATTNTTATTCGAAACAGAAAGTAGGGTGCAGATGCATTCAAGCTATACTAATATGCTACAGTGACAGAGTAACANAATGACATGCATCGAAATGCTGATGTGTAACAGTGAAATGAGTGGTTGTGCTCTATGAAACATCACTCACTATGAATAATGAGGAGTCGATCGACGAACACTGTTTGTACCTCAATATGTGAGTGTGTTCACAGTGATCACTTCAAGTTATTGAATCGCTGAAGAATTGCAAACAACTCCCTTACCGACAATCATAACACACTGAATTATTTTATTTATTACGGACAAACTTGCAGTCTATCATTCACTGCATTGAGAAAATCAAAATTGTCTACGCGTTCGTGAGCGTTTCGCTTGTTCACCATGAGACGCTCAATGATGTACACAATCTGTGCATGTTGAAGCACTCGAATGTAAATGTTTGCAAAGAAAATGATTGAGTAAACAATGTACAGATGGAACGGAATACGATGATTGTGACCACATTTCTGTAAAGCTAGATGTTCGATGAATATGAAAGTGATAATCCGTTGAGTTAAACATAAAGCACGACTGACATAGAGATAG ]
[+] EMBL CD156908 [ ACACTGAATTATTTTATTTATTACGAACAAACTTGCAGTCTATCATTCACTGCATTGAGAAAATCAAAAATGTCTACGCGTTCGTGAGCGTTTCGCCTGTTCACCATGAGACGCTCAATGATGTACACAATCTGTGCATGTTGAAGCACTCGAATGGAAATGGTTGCAAAGAAAATGATTGAGTAAACAATGAACAGATGGAACGGAATACGATGATTGTGACCACATTTCTGTAAAGCTAGATGTTCGATGAATATGAAAGTGATAATCCGTTGAGTTAAGCATAAAGCACGACTGACATAGAGATA ]
[+] EMBL CD156954 [ ACACTGAATTATTTTATTTATTACGAACAAACTTGCAGTCTATCATTCACTGCATTGAGAAAATCAAAAATGTCTACGCGTTCGTGAGCGTTTCGCTTGTTCACCATGAGACGCTCAATGATGTACACAATCTGTGCATGTTGAAGCACTCGAATGGAAATGGTTGCAAAGAAAATGATTGAGTAAACAATGAACAGATGGAACGGAATACGATGATTGTGACCACATTTCTGTAAAGCTAGATGTTCGATGAATATGAAAGTGACAATCCGTTGAGTTAAGCATAAAGCACGACTGACATAGAGATA ]
[-] EMBL CD159486 [ TTACGAACAAACTTGCAGTCTATCATTCACTGCATTGAGAAAATCAAAAATGTCTACGCGTTCGTGAGCGTTTCGCTTGTTCACCATGAGACGCTCAATGATGTACACAATCTGTGCATGTTGAAGCACTCGAATGGAAATGGTTGCAAAGAAAATGATTGAGTAAACAATGAACAGATGGAACGGAATACGATGATTGTGACCACATTTCTGTAAAGCTAGATGTTCGATGAATATGAAAGTGATAATCCGTTGAGTTAAACATAAAGCACGACTGACATAGAGATAGATGTGTGTGTATGCTTACTGAGGAATGTGGACAACTTCGAGTTCGACAATGGAATGTTCCATGGAAATTGTATGAGAGTGTGATGAATGAAACCTGTTTGTTATAATGACAAATCGAAAATTGTTTGGATTGTA]
[+] EMBL CD119306 [ GAGCGTTTCGCTTGTTCACCATGAGACGCTCAATGATGTACACAATCTGTGCATGTTGAAGCACTCGAATGGAAATGGTTGCAAAGAAAATGATTGAGTAAACAATGAACAGATGGAACGGAATACGATGATTGTGACCACATTTCTGTAAAGCT ]
[+] EMBL CD119563 [ GAGCGTTTCGCTTGTTCACCATGAGACGCTCAATGATGTACACAATCTGTGCATGTTGAAGCACTCGAATGGAAATGGTTGCAAAGAAAATGATTGAGTAAACAATGAACAGATGGAACGGAATACGATGATTGTGACCACATTTCTGTAAAGCT ]
[-] EMBL CD119406 [ AGCGTTTCGAATGTTCACCATGAGACAAAAAATGAAGTACACAATCTGTGCATGTTGAAGCACTCGAATGGAAATGGTTGCAAAGAAAATGATTGAGTAAACAATGAACAGATGGAACGGAATACGATGATTGTGACCACATTTCTGTAAAGCTAGATGTTCGATagacggt ]
[-] EMBL CD114662 [ TCGAATGGAAATGGTTGCAAAGAAAATGATTGAGTAAACAATGTACAGATGGAACGGAATACGATGATTGTGACCACATTTCTGTAAAGCTAGATGTTCGATGAATATGAAAGTGATAATCCGTTGAGTTAAACATAAAGCACGACTGACATAGAGATAGATGTGTGTGTATGCTTACTGAGGAATGTGGACAACTTCGAGTTCGACAATGGAATGTTCCATGGAAATTGTATGAG ]
consensusID : consensus_10410#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 693 fasta sequence
[TTGTGCCCACTCTAAGAGGATGATGACATCCCTTATAACCCTAAGAATCTACCCCTTGGATGGGATGGGAAAGTTAGTTTTTTAATTTCCTTAGCTTGTATAAAGTTGAACCTAACGACCAATAATCCTTACTGACTAGTGTTGGTGATGGTTGGAAGAAAGCTAGGGGCGGCCTAACCAAAACGTGGCATCAGTGCTTGAAGTCACTAACTTCTAGTCTGATCCATATTGGTAGATGCAGACTACTTAGTTGAGGTCCGCGTGACTATCGTAACCACTGGTTGGAGACTTTGGGTGACATGGCTAAGAATCGATCACAATGTCGTAGGTGTATACACTCTTTATCTTCCCTTAAACCATGAGATTAAAGCTACTGTATACCTTTCTACGAACTAATCCCCCCCCCTGTATCATATCCTTGTACACAATCTTTTATTTATTACGACCATTGAAGTAACTACTTCTATGAATTCGGTGTTCATCTTGTTGTGCTGATGAGGTGTGGCAACTTGGACCGGTGCATATAAGTGCCTGGTCCTACATTGTAGCTGAATGACTGACTGACGTCGGGTTAATACATATAGTAACTTTCTCATGAACGAATGAAGAAGGAATTCTCAGTGCTTCGATGTAATCTTAAATGCTATTCTTTGGTATACGAAAGTTTTATTTTTTTTATTTATTTGAACACAT]
[+] EMBL CD091090 [TTGTGCCCACTCTAAGAGGATGATGACATCCCTTATAACCCTAAGAATCTACCCCTTGGATGGGATGGGAAAGTTAGTTTTTTAATTTCCTTAGCTTGTATAAAGTTGAACCTAACGACCAATAATCCTTACTGACTAGTGTTGGTGATGGTTGGAAGAAAGCTAGGGGCGGCCTAACCAAAACGTGGCATCAGTGCTTGAAGTCACTAACTTCTAGTCTGATCCATATTGGTAGATGCAGACTACTTAGTTGAGGTCCGCGTGACTATCGTAACCACTGGTTGGAGACTTTGGGTGACATGGCTAAGAATCGATCACAATGTCGTAGGTGTATACACTCTTTATCTTCCCTTAAACCATGAGATTAAAGCTACTGTATACCTTTCTACGAACTAATCCCCCCC ]
[+] EMBL CD091092 [ TGACATTCCTTATAACCCTAAGAATCTACCCCTTGGATGGGATGGGAAAGTTAGTTTTTTAATTTCCTTAGCTTGTATAAAGTTGAACCTAACGACCAATAATCCTTACTGACTAGTGTTGGTGATGGTTGGAAGAAAGCTAGGGGCGGCCTAACCAAAACGTGGCATCAGTGCTTGAAGTCACTAACTTCTAGTCTGATCCATATTGGTAGATGCAGACTACTTAGTTGAGGTCCGCGTGACTATCGTAACCACTGGTTGGAGACTTTGGGTGACATGGCTAAGAATCGATCACAATGTCGTAGGTGTATACACTCTTTATCTTCCCTTAAACCATGAGATTAAAGCTACTGTATACCTTTCTACGAACTGATCCCCCCCCCTGTATCATATCCTTGCACACAATCTTTTATTTATTACGACCATTGAAGTAACTACTTCTATCAATTCGGTG ]
[-] EMBL CD091124 [ GTTGAGGTCCGCGTGACTATCGTAACCACTGGTTGGGGACTTTGGGTGACATGGCTAAGAATCGATCACAATGTCGTAGGTGTATACACTCTTTATCTTCCCTTAAACCATGAGATTAAAGCTACTGTATACCTTTCTACGAACTAATCCCCCCGCCTGTATCATATCCTTGTACACAATCTTTTATTTATTACGACCACTGAAGTAACTACTTCTATGAATTCGGTGTTCATCTTGTTGTGCTGATGAGGTGTGGCAACTTGGACCGGTGCATATAAGTGCCTGGTCCTACATTGTAGCTGAATGACTGACTGACGTCGGGTTAATACATATAGTAACTTTCTCATGAACGAATGAAGAAGGAATTCTCAGTGCTTCGATGTAATCTTAAATGCTATTCTTTGGTATACGAAAGTTTTATTTTTTTTATTTATTTGAACACAT]
[-] EMBL CD091086 [ CGTAACCACTGGTTGGAGACTTTGGGTGACATGGCTAAGAATCGATCACAATGTCGTAGGTGTATACACTCTTTATCGTCCCTTAAACCATGAGATTAAAGCTACTGTATACCTTTCTACGAACTAATCCCCCCCCCTGTATCATATCCTTGTACACAATCTTTTATTTATTACGACCATTGAAGTAACTACCTCTATGAATTCGGTGTTCATCTTGTTGTGCTGATGAGGTGTGGCAACTTGGACCGGTGCATATAAGTGCCTGGTCCTACATTGTAGCTGAATGACTGACTGACGTCGGGTTAATACATATAGTAACTTTCTCATGAGCGAATGAAGAAGGAATTCTCAGTGCTTCGATGTAATCTTAAATGCTATTCTTTGGTATACGAAAGTTTTATTTTTTTTATTTATTTGAACACAT]
[-] EMBL CD091111 [ TGGTTGGAGACTTTGGGTGACATGGCTAAGAATCGATCACAATGTCGTAGGTGTATACACTCTTTATCTTCCCTTAAACCATGAGATTAAAGCTACTGTATACCTTTCTACGAACTAATCCCCCCCCCTGTATCATATCCTTGTACACAATCTTTTATTTATTACGACCATTGAAGCAACTACTTCTATGAATTCGGTGTTCATCTTGTTGTGCTGATGAGGTGTGGCAACTTGGACCGGTGCATATAAGTGCCTGGTCCTACATTGTAGCTGAATGACTGACTGACGTCGGGTTAATACATATAGTAACTTTCTCATGAACGAATGAAGAAGGAATTCTCAGTGCTTCGATGTAATCTTAAATGCTATTCTTTGGTATACGAAAGTTTTATTTTTTTTATTTATTTGAACACAT]
[-] EMBL CD091112 [ ATATCCTTGGACACAATCTTTTATTTATTACGACCATTGAAGTAACTACTTCTATGAATTCGGTGTTCATCTTGTTGTGCTGATGAGGTGTGGCAACTTGGACCGGTGCATATAAGTGCCTGGTCCTACATTGTAGCTGAATGACTGACTGACGTCGGGTTAATACATATAGTAACTTTCTCATGAACGAATGAAGAAGGAATTCTCAGTGCTTCGATGTAATCTTAAATGCTATTCTTTGGTATACGAAAGTTTTATTTTTTTTATTTATTTGAACACAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10410#0 --------ACTTACATGGTACTCGTCGTATTCGACGATTACCTACAAAACCTATGTATTA 52
consensus_10410#1 TTGTGCCCACTC-TAAGAGGATGATGACATCCC-TTATAACCCTAAGAATCTACCCCTTG 58
*** * * * * ** * ** *** * ** *** **
consensus_10410#0 ACAGAAGAACGAAACATGATGAGC--ATTTCTGCAAACAA-GTAAAAATAAATAGAAAAA 109
consensus_10410#1 GATGGGATGGGAAAGTTAGTTTTTTAATTTCCTTAGCTTGTATAAAGTTGAACCTAACGA 118
* **** * * ***** * **** * ** ** *
consensus_10410#0 TTAAAATGCCATTGCATGATTGACATTTTTATTCGA-AACAGAAAGTAGGGTGCAGATGC 168
consensus_10410#1 CCAATAATCC-TTAC-TGACTAGTGTTGGTGATGGTTGGAAGAAAGCTAGGGGCGGCCTA 176
** * ** ** * *** * ** * * * ****** ** ** *
consensus_10410#0 ATTCAAGCTATACTAATATGCT-ACAGTGACAGAGTAACAAAATGACATGCATCGAAATG 227
consensus_10410#1 ACCAAAACGTGGCATCAGTGCTTGAAGTCACTAACTTCTAGTCTGATCCATATTGGTA-- 234
* ** * * **** *** ** * * * *** ** * *
consensus_10410#0 CTGATGTGTAACAGTGAAATGAGTGGTTGTGCT-CTATGAAACATCACTCACTATGAATA 286
consensus_10410#1 --GATGCAGACTACTTAGTTGAG-GTCCGCGTGACTATCGTA-ACCACTGGTTGGAGACT 290
**** * * * * **** * * * **** * * **** * *
consensus_10410#0 ATGAGGAGTCGATCGACGAACACTGTTTGTACCTCAATATGTGAGTGTGTTCACAGTGAT 346
consensus_10410#1 TTGGGTGAC--ATGGCTAAGAATCGATCACAATGTCGTAGGTGTATACACTCTTTATCTT 348
** * ** * * * * * * ** *** * ** * *
consensus_10410#0 CACTTCAAGTTATTGAATCGCTGAAGAATTGCAAACAACTCCCATACCGACAATCATAAC 406
consensus_10410#1 C-CCTTAAACCATGAGATT-----AAAGCTACTGTATACCTTTCTACGAACTAATCCCCC 402
* * * ** ** ** * * * * ** *** ** * *
consensus_10410#0 ACACTGAATTATTTTATTTATTACGGACAAACTTGCAGTCTATCATTCACTGCATTGAGA 466
consensus_10410#1 CCCCTGTATCATATCCTT------GTACA------CAATCTTTTATTTATTACGACCATT 450
* *** ** ** * ** * *** ** *** * *** * * * *
consensus_10410#0 AAATCAAAATTGTCTACGCGTTCGTGAGCGTTTCGCTTGTTCACCATGAGACGCTCAATG 526
consensus_10410#1 GAAGTAACTACTTCTATGAATTCG---GTGTTCATCTTGTTGTGCTGATGAGGTGTGGCA 507
** ** **** * **** * *** ****** * ** *
consensus_10410#0 ATGTACACAATCTGTGCATGTTGAAGCACTCGAATGGAAATGGTTGCAAAGAAAATGATT 586
consensus_10410#1 ACTTG---GACCGGTGCATAT--AAGTGCCTGGTCCTACATTGTAGCTGAATGACTGACT 562
* * * * ****** * *** * * * ** ** ** * * *** *
consensus_10410#0 GAGTAAACAATGAACAGATGGAACGGAATACGATGATTGTGACCACATTTCTGTAAAGCT 646
consensus_10410#1 GAC------------------GTCGGGTTA--ATACATATAGTAACTTTCTCATGAA--- 599
** *** ** ** * * ** ** * **
consensus_10410#0 AGATGTTCGATGAATATGAAAGTGATAATCCGTTGAGTTAAACATAAAGCACGACTGACA 706
consensus_10410#1 ------CGAATGAAGAAGGAATTCTCAGTGCTTCGATGTAATCTTAAA-TGCTATTCTTT 652
***** * * ** * * * * * ** *** * **** * * *
consensus_10410#0 TAGAGATAGATGTGTGTGTATGCTTACTGAGGAATGTGGACAACTTCGAGTTCGACAATG 766
consensus_10410#1 GGTATACGAAAGTTTTATTTTTTTTATTTA----TTTGAACACAT--------------- 693
* * * ** * * * *** * * * ** *** *
consensus_10410#0 GAATGTTCCATGGAAATTGTATGAGAGTGTGATGAATGAAACCTGTTTGTTATAATGACA 826
consensus_10410#1 ------------------------------------------------------------
consensus_10410#0 AATCGAAAATTGTTTGGATTGTA 849
consensus_10410#1 -----------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||