These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10419#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 960 fasta sequence [AGATGAACAATTATACTGGACAATATGGATACATGTTTCCGATGCAACCAAACTATGCTTGGGGTCCGAACCAAGCGCACACACCTGTTCAAGAGCCACAATATACCTATGGTTATGACTCGAATAACCATCAGCCCCCTCCGTACACTGACTATATGGGACCTCAGGCACAAGATTATGAATCGCCCGTAAATGATTTTAATGGTCAGTATGGATATTCCACAAATTCCACACCTACCCAACCTGGCTATAGTGCTCAATGGGGTGGGAATCAATTTCAAACTCCATCACACGATTCAAGTTATTGGTATCATTCTCGTGAGCCACCAACTAATAGTCAACCACGCTATCAACCTCCTCCGTCTACGCCTATACTTGAACAAAATCGAAAACCTAAACTACGAATATACTGTAAATACTGTGATGTAGCATTCACGGATGAGAATACTTATTCCATACATTTGGATACTGAAAGACACATCCGTAATTTCAAACGTAGCTTTAATACAACTGAGGATAGAAGGGGTAAAGGAAAGTCTAGAAGTGACTATCGCAGAAATAATAACAAAAACAGAAAACCTAATTTCTACTGTGAGGATTGCAAACGATCATTTCAAAGAAAAGAACAATACCGTGATCATATCACAGCAGAAGGACATATGAAAAAGTCTGATCGTAACAGAAATGAATCAGACGAAGGAGAAGCTAAAAAGGCTCCAAGACGTACAGATTATTGTGATGTATGTGAACAAACATTTCAAAATGGTCGTCACTTTTATGCTCATCTAAAGTGGAAAAAGCATAAACGTCTTTGTAGAGTTGCTAGACTTTTAAGAGCACAACTGAAAAAGACACCGGAAGAAGTTGCTAATGATCCATTGGGTTCATTCACATTATATATGAATAAAGAGAATCTTTGGTCATCCGCGCATTTATGTGTTGGATTATTGTGTCCTTCCA] [-] EMBL CD146691 [AGATGAACAATTATACTGGACAATATGGATACATGTTTCCGATGCAACCAAACTATGCTTGGGGTCCGAACCAAGCGCACACACCTGTTCAAGAGCCACAATATACCTATGGTTATGACTCGAATAACCATCAGCCCCCTCCGTACACTGACTATATGGGACCTCAGGCACAAGATTATGAATCGCCCGTAAATGATTTTAATGGTCAGTATGGATATTCCACAAATTCCACACCTACCCAACCTGGCTATAGTGCTCAATGGGGTGGGAATCAATTTCAAACTCCATCACACGATTCAAGTTATTGGTATCATTCTCGTGAGCCACCAACTAATAGTCAACCACGCTATCAACCTCCTCCGTCTACGCCTATACTTGAACAAAATCGAAAACCTAAACTACGAATATACTGTAAATACTGTGATGTAGCATTCACGGATGAGAATACTTATTCCATACATTTGGATACTGAAAGACACATCCGTAATTTCAAACGTAGCTTT ] [+] EMBL CD070040 [ ACTATATGGGA CTCAGGCACAAGATTATGAATCGCCCGTAAATGATTTTAATGGTCAGTATGGATATTCCACAAATTCCACACCTACCCAACCTGGCTATAGTGCTCAATGGGGTGGGAATCAATTTCAAACTCCATCACACGATTCAAGTTATTGGTATCATTCTCGTGAGCCACCAACTAATAGTCAACCACGCTATCAACCTCCTCCGTCTACGCCTATACTTGAACAAAATCGAAAACCTAAACTACGAATATACTGTAAATACTGTGATGTAGCATTCACGGATGAGAATACTTATTCCATACATTTGGATACTGAAAGACACATCCGTAATTTCAAACGTAGCTTTAATACA ] [-] EMBL CD095246 [ ATGAATCGCCCGTAAATGATTTTAATGGTCAGTATGGATATTCCACAAATTCCACACCTACCCAACCTGGCTATAGTGCTCAATGGGGTGGGAATCAATTTCAAACTCCATCACACGATTCAAGTTATTGGTATCATTCTCGTGAGCCACCAACTAATAGTCAACCACGCTATCAACCTCCTCCGTCTACGCCTATACTTGAACAAAATCGAAAACCTAAACTACGAATATACTGTAAATACTGTGATGTAGCATTCACGGATGAGAATACTTATTCCATACATTTGGATACTGAAAGACACATCCGTAATTTCAAACGTAGCTTTAATACAACTGAGGATAGAAGGGGTAAAGGAAAGTCTAGA ] [-] EMBL CD094854 [ ATGAATCGCCCGTAAATGATTTTAATGGTCAGTATGGATATTCCACAAATTCCACACCTACCCAACCTGGCTATAGTGCTCAATGGGGTGGGAATCAATTTCAAACTCCATCACACGATTCAAGTTATTGGTATCATTCTCGTGAGCCACCAACTAATAGTCAACCACGCTATCAACCTCCTCCGTCTACGCCTATACTTGAACAAAATCGAAAACCTAAACTACGAATATACTGTAAATACTGTGATGTAGCATTCACGGATGAGAATACTTATTCCATACATTTGGATACTGAAAGACACATCCGTAATTTCAAACGTAGCTTTAATACAACTGAGGATAGAAGGGGTAAAGGAAAGTCTAGA ] [+] EMBL CD163219 [ CAACCTGGCTATAGTGCTCAATGGGGTGGGAATCAATTTCAAACTCCATCACACGATTCAAGTTATTGGTATCATTCTCGTGAGCCACCAACTAATAGTCAACCACGCTATCAACCTCCTCCGTCTACGCCTATACTTGAACAAAATCGAAAACCTAAACTACGAATATACTGTAAATACTGTGATGTAGCATTCACGGATGAGAATACTTATTCCATACATTTGGATACTGAAAGACACATCCGTAATTTCAAACGTAGCTTTAATACAACTGAGGATAGAAGGGGTAAAGGAAAGTCTAGAAGTGACTATCGCAGAAATAATAACAAAAACAGAAAACCTAATTTCTACTGTGAGGATTGCAAACGATCATTTCAAAGACAAGAACAATACCGTGATCATATCACAGCAGAAGGACATATGAAAAAGTCTGATCGTAACAGAAATGAATCAGACGA ] [+] EMBL AI975101 [ CGTGAGCCACCAACTAATAGTCAACCACGCTATCAACCTCCTCCGTCTACGCCTATACTTGAACAAAATCGAAAACCTAAACTACGAATATACTGTAAATACTGTGATGTAGCATTCACGGATGAGAATACTTATTCCATACATTTGGATACTGAAAGACACATCCGTAATTTCAAACGTAGCTTTAATACAACTGAGGATAGAAGGGGTAAAGGAAAGTCTAGAAGTGACTATCGCAGAAATAATAACAAAAACAGAAAACCTAATTTCTACTGTGAGGATTGCAAACGATCATTTCAAAGAAAAGAACAATACCGTGATCATATCACAGCAGAAGGACATATGAAAAAGTCTGATCGTAACAGAAATGAATCAGACGAAGGAGAAGCTAAAAAGGCTCCAAGACGTACAGATTATTGTGATGTATGTGAACAAACATTTCAAAATGGTCGTCACTTTTATGCTCATCTAAAGTGGAAAAAGCATAAACGTCTTTGTAGAGTTGCTAGACTTTTAAGAGCACAACTGANAAAGACACCGGAAGAAGTTGCTAATGATCCATTGGGTT ] [-] EMBL CD131653 [ TCCTCCGTCTACGCCTATACTTGAACAAAATCGAAAACCTAAACTACGAATATACTGTAAATACTGTGATGTAGCATTCACGGATGAGAATACTTATTCCATACATTTGGATACTGAGAGACACATCCGTAATTTCAAACGTAGCTTTAATACAACTGAGGATAGAAGGGGTAAAGGAAAGTCTAGAAGTGACTATCGCAGAAGTAATAACAAAAACAGAAAACCTAATTTCTACTGTGAGGATTGCAAACGATCATTTCAAAGAAAAGAACAATACCGTGATCATATCACAGCAGAAGGACATATGAAAAAGTCTGATCGTAACAGAAATGAATCAGACGAAGGAGAAGCTAAAAAGGCTCCAAGACGTACAGATTATTGTGATGTATGTGAACAAACATTTCAAAATGGTCGTCACTTTTATGCTCAT ] [-] EMBL CD096997 [ CGTCTACGCCTATACTTGAACAAAATCGAAAACCTAAACTACGAATATACTGTAAATACTGTGATGTAGCATTCACGGATGAGAATACTTATTCCATACATTTGGATACTGAAAGACACATCCGTAATTTCAAACGTAGCTTTAATACAACTGAGGATAGAAGGGGTAAAGGAAAGTCTAGAAGTGACTATCGCAGAAATAATAACAAAAACAGAAAACCTAATTTCTACTGTGATGATTGCAAACGATCATTTCAAAG ] [-] EMBL CD097026 [ CGTCTACGCCTATACTTGAACAAAATCGAAAACCTAAACTACGAATATACTGTAAATACTGTGATGTAGCATTCACGGATGAGAATACTTATTCCATACATTTGGATACTGAAAGACACATCCGTAATTCCAAACGTAGCTTTAATACAACTGAGGATAGAAGGGGTAAAGGAAAGTCTAGAAGTGACTATCGCAGAAATAATAACAAAAACAGAAAACCTAATTTCTACTGTGAGGATTGCAAACGATCATTTCAAAGAAAAGAACAAT ] [-] EMBL CD178617 [ GGATGAGAATACTTATTCCATACATTTGGATACTGAAAGACACATCCGTAATTTCAAACGTAGCTTTAATACAACTGAGGATAGAAGGGGTAAAGGAAAGTCTAGAAGTGACTATCGCAGAAATAATAACAAAAACAGAAAACCTAATTTCTACTGTGAGGATTGCAAACGATCATTTCAAAGAAAAGAACAATACCGTGATCATATCACAGCAGAAGGACATATGAAAAAGTCTGATCGTAACAGAAATGAATCAGACGAAGGAGAAGCTAAAAAGGCTCCAAGACGTACAGATTATTGTGATGTATGTGAACAAACATTTCAAAATGGTCGTCACTTTTATGCTCATCTAAAGTGGAAAAAGCATAAACGTCTTTGTAGAGTTGCTAGACTTTTAAGAGCACAACTGAAAAAGACACCGGAAGAAGTTGCTAACGATCCATTGGGTTCATTCACATTATATATGAATAAAGAGAATCTTTGGTCATCCGCGCATTTATGTGTTGGATTATTGTGTCCTTCCA] [+] EMBL CD178395 [ AAGTCTAGAAGTGACTATCGCAGAAATAATAACAAAAACAGAAAACCTAATTTCTACTGTGAGGATTGCAAACGATCATTTCAAAGAAAAGAACAATACCGTGATCATATCACAGCAGAAGGACATATGAAAAAGTCTGATCGTAACAGAAATGAATCAGACGAAGGAGAAGCTAAAAAGGCTCCAAGACGTACAGATTATTGTGATGTATGTGAACAAACATTTCAAAATGGTCGTCACTTTTATGCTCATCTAAAGTGGAAAAAGCATAAACGTCTTTATAGAGTTGCTAGACTTTTAAGAGCACAACTGAAAAAGACACCGGAAGAAGTTGCTAATGATCCATTGGGTTCATTCACATTATATATGAATAAAGAGAATCTTTGGTCATCCGCGCATTTATGTGTTGG ] [-] EMBL CD130770 [ ATTTCAAAGAAAAGAACAATACCGTGATCATATCACAGCAGAAGGACATATGAAAAAGTCTGATCGTAACAGAAATGAATCAGACGAAGGAGAAGCT AAAAGGCTCCAAGACGTACAGATTATTGTGATGTATGTGAACAAACATTTCAAAATGGTCGTCACTTTTATGCTCATCTAAAGTGGAAAAAGCATAAACGTCTTTGTAGAGTTGCTAGACTTTTAAGAGCACAACTGAAAA ] [-] EMBL CD184386 [ AGACCAATACCGTGATCATATCACAGCAGAAGGACATATGAAAAAGTCTGATCGTAACAGAAATGAATCAGACGAAGGAGAAGCTAAAAAGGCTCCAAGACGTACAGATTATTGTGATGTATGTGAACAAACATTTCAAAATGGTCGTCACTTTTATGCTCATCTAAAGTGGAAAAAGCATAAACGTCTTTGTAGAGTTGCTAGTCTTTTAAGAGCACAACTGAAAAAGACACCGGAAGA ] consensusID : consensus_10419#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 633 fasta sequence [TCTGATCGTACCAGAAATGAATCAGGCGAAGGAGAAGCTAAAAAGGCTCCAAGACGTACAGATTATTGTGATGTATGTGAACAAACATTTCAAAATGGTCGTCACTTTTATGCTCATCTAAAGTGGAAAAAGCATAAACGTCTTTGTAGAGTTGCTAGACTTTTAAGAGCACAACTGAAAAAGACACCGGAAGAAGTTGCTAATGATCCATTGGGTTCATTCACATTATATATGAATAAAGACTGCTCTGTTCCATATGGGAACTATGGAGACTGTAAGGAAGTCGAATTGGATGCTGGAAATGCATTTTTGCAAAAATTCCTCGACTTGAAACATTTAATCTCTCAAGAACCAAATCCAGTTGGCGAGGAATTTATTCAGGGGCAAGTATACAATACCAGAGATTTGGAATATAGCTGTTCACTTTGTAAAGCGGATTTAGTTGGAGCTGATGATATTGAAAATCATCTACGTACTCTTACACATCAAAAGAAATATAAAGAGAAATTTAACTTGGAGGAATTTGCATTTGAAGAAGAAATGAGATTGTCTGCATCCGATTCGGTTTTTGCTGTATGGAAAACATGTCAATCCAGAGCTAGTAAAGAATTAGCAAGAATTATCGGAGAAAAA] [-] EMBL CD165514 [TCTGATCGTACCAGAAATGAATCAGGCGAAGGAGAAGCTAAAAAGGCTCCAAGACGTACAGATTATTGTGATGTATGTGAACAAACATTTCAAAATGGTCGTCACTTTTATGCTCATCTAAAGTGGAAAAAGCATAAACGTCTTTGTAGAGTTGCTAGACTTTTAAGAGCACAACTGAAAAAGACACCGGAAGAAGTTGCTAATGATCCATTGGGTTCATTCACATTATATATGAATAAAGACTGCTCTGTTCCATATGGGAACTATGGAGACTGTAAGGAAGTCGAATTGGATGCTGGAAATGCATTTTTGCAAAAATTCCTCGACTTGAAACATT ] [-] EMBL CD190689 [ CTGATCGTAACAGAAATGAATCAGACGAAGGAGAAGCTAAAAAGGCTCCAAGACGTACAGATTATTGTGATGTATGTGAACAAACATTCCAAAATGGTCGTCACTTTTATGCTCACCTAAAGTGGAAAAAGCATAAACGTCTTTGTAGAGTTGCTAGACTTTTAAGAGCACAACTGAAAAAGACACCGGAAGAAGTTGCTAATGATCCATTGGGTTCATTCACATTATATATGAATAAAGACTGCTCTGTTCCATATGGGAACTATGGAGACTGTAAGGAAGTCGAATTGGATGCTGGAAATGCATTTTTGCAAAAATTCCTCGACTTGAAACATT ] [+] EMBL CD137151 [ AGACTGCTCTGTTCCATATGGGAACTATGGAGACTGTAAGGAAGTCGAATTGGATGCTGGAAATGCATTTTTGCAAAAATTCCTCGACTTGAAACATTTAATCTCTCAAGAACCAAATCCAGTTGGCGAGGAATTTATTCAGGGGCAAGTATACAATACCAGAGATTTGGAATATAGCTGTTCACTTTGTAAAGCGGATTTAGTTGGAGCTGATGATATTGAAAATCATCTACGTACTCTTACACATCAAAAGAAATATAAAGAGAAATTTAACTTGGAGGAATTTGCATTTGAAGAAGAAATGAGATTGTCTGCATCCGATTCGGTTTTTGCTGTATGGAAAACATGTCAATCCAGAGCTAGTAAAGAATTAGCAAGAATTATCGGAGAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10419#0 AGATGAACAATTATACTGGACAATATGGATACATGTTTCCGATGCAACCAAACTATGCTT 60 consensus_10419#1 ------------------------------------------------------------ consensus_10419#0 GGGGTCCGAACCAAGCGCACACACCTGTTCAAGAGCCACAATATACCTATGGTTATGACT 120 consensus_10419#1 ------------------------------------------------------------ consensus_10419#0 CGAATAACCATCAGCCCCCTCCGTACACTGACTATATGGGACCTCAGGCACAAGATTATG 180 consensus_10419#1 ---------------TCTGATCGTACCAGAAATGAATCAGGC-----GAAGGAGAAGCTA 40 * ***** * * ** * * * * *** * consensus_10419#0 AATCGCCCGTAAATGATTTTAATGGTCAGTATGGATATTCCACAAATTCCACACCTACCC 240 consensus_10419#1 AAAAGGCTCCAAGACGTACAGATTATTGTGATGTATGTGA-ACAAACATTTCAA--AATG 97 ** * * ** * ** * *** ** * ***** ** * consensus_10419#0 AACCTGGCTATAGTGCTCAA-TGGGGTGGGAATCAATTTCAAACTCCATCACACGATT-- 297 consensus_10419#1 GTCGTCACTTTTATGCTCATCTAAAGTGGAAA--AAGCATAAACGTCTTTGTAGAGTTGC 155 * * ** * ****** * **** ** ** **** * * * ** consensus_10419#0 CAAGTTATTGGTATCATTCTCGTGAGCCACCAACTAATAGTCAACCACGCTATCAACCTC 357 consensus_10419#1 TAGACTTTTAAGAGCACAACTGAAAAAGACACCGGAAGAAGTTGCTA-ATGATCCATTGG 214 * * ** * ** * * ** ** * * * *** * consensus_10419#0 CTCCGTCTACGCCTATACTTGAACAAAATCGAAAACCTAAACTACGAATATACTGTAAAT 417 consensus_10419#1 GTTCATTCACAT-TATATATGAATAAAGACTGC--TCTGTTCCATATGGGAACTATGGAG 271 * * * ** **** **** *** * ** * * *** * * consensus_10419#0 ACTGTGATGTAGC---ATTCACGGATGAGAATAC-TTATTCCATACATTTGGATACTGAA 473 consensus_10419#1 ACTGTAAGGAAGTCGAATTGGATGCTGGAAATGCATTTTTGCAAAAATTCCTCGACTTGA 331 ***** * * ** *** * ** *** * ** ** ** * *** *** * consensus_10419#0 AGACACATCCGTAATTTCAAACGTAGCTTTAATACAACTGAGGATAGAAGGGGTAAAGGA 533 consensus_10419#1 A---ACATT--TAATCTCTCAAGAACC--AAATCCAGTTGGCGAGGAATTTATTCAGGGG 384 * **** **** ** * * * * *** ** ** ** * * * ** consensus_10419#0 -AAGTCTAGAAGTGACTATCGCAGAAATAATAACAAAAACAGAAAACCTAATTTCTACTG 592 consensus_10419#1 CAAGTATA-------CAATACCAGAGATTTGGAATATAGCTG----TTCACTTTGTAAAG 433 **** ** * ** **** ** * * * * * * *** ** * consensus_10419#0 TGAGGATTGCAAACGATCATTTCAAAGAAAAGAACAATACCGTGATCATATCACAGCAGA 652 consensus_10419#1 CGGATTTAGTTGGAGCTGATGATATTGAAAAT--CATCTACGTACTCTTA-CACATCAAA 490 * * * * * ** * ***** ** *** ** ** **** ** * consensus_10419#0 AGGA-CATATGAAAAAGTCTGATCGTAACAGAAATGAATCAGACGAAGGAGAAGCTAAAA 711 consensus_10419#1 AGAAATATAAAGAGAAATTTAACTTGGAGGAATTTGCATT---TGAAGAAGAAATGAGAT 547 ** * *** * ** * * * * * ** ** **** **** * * consensus_10419#0 AGGCTCCAAGACGTACAGATTATTGTGATGTATGTGAACAAACATTTCAAAATGGTCGTC 771 consensus_10419#1 TGTCTGCATCCGATTCGGTTT---TTGCTGTATGGA---AAACATGTCAATCCAGAGCTA 601 * ** ** * * * ** ** ****** ****** **** * * consensus_10419#0 ACTTTTATGCTCATCTAAAGTGGAAAAAGCATAAACGTCTTTGTAGAGTTGCTAGACTTT 831 consensus_10419#1 G--TAAAGAATTAGCAAGAATTATCGGAGAAAAA-------------------------- 633 * * * * * * * * ** * ** consensus_10419#0 TAAGAGCACAACTGAAAAAGACACCGGAAGAAGTTGCTAATGATCCATTGGGTTCATTCA 891 consensus_10419#1 ------------------------------------------------------------ consensus_10419#0 CATTATATATGAATAAAGAGAATCTTTGGTCATCCGCGCATTTATGTGTTGGATTATTGT 951 consensus_10419#1 ------------------------------------------------------------ consensus_10419#0 GTCCTTCCA 960 consensus_10419#1 --------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||