These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10436#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1098 fasta sequence [TAAAAGTGCCACTATAGTGCCAAACGGAGTAGCAGTTGCACTATCCAAAATCCAAAGTGC-GACAT-TCAAAATAAG-AAACACT-GAAAAAACTAAGGCAGGACAAACTGTTGCAGTTAATATAACATTAGTCTTCCAACGCAAACCGCCGAAAAATTTGTAGATTCGAGCTGAAGCATAACCCGAAGAAGCTCCTAA-ACAAGCGAATACAGCCAAAGCACAAGTCATCAATGCACC--ACGATTGGCTGGACTTAAAAATCCAAGACATGCAAAAAATAGGGTGACCAATAACATTTGGAAGATTTGAACTCCTGAGCCAACAACAACTGAGAAAAGCATACCCCAGTTAGGCGGACGAAATACATCACCGTGAACTAATTTCCAACCAGATTCCTCCTGAACAGCGGTCGCGCTTTCAAGTTCTGTGTAACGAGCAATATCACGACGTAGTGTACGCAGAAGAATGGTTGCAAGTAGACCAGAAAGGAATAATGTTAACACACATGAATTCAAAATAGATAACCACTGAATGTTACTTTGCGGCATTGTGTCCAAAATATAATCCCAACGAGATGACCATTTACGCGTAAGATCCTCTTCGAATGTTACGCTGTATGTGTAAGTTATTGTAAGTTCATCCTTTAAATCAGACGGGAGTATTAATGGCTGCTTTAATGTACAATCCGGTGCATTGTTTGGATGAGCAATACTACTAGGACTGGCAATCACTGAAAGAATACGTCCAGCTTTAACATTTCCTGAACTACTCCATGAATCTTTAACTGGATGATAGACAATGTGCAGACTGACATGATTTAACAAGATTGTACTATGTTTGGCCAAAGGTATTCCTAAACACACAGAATCCGATTTATCCTGATTACCCTCAAAGCATCCAAGTGGAATAGAAGTTTTACAATATTTTTTTCCGTCTACAGCTTGTACACAAACTGTAACTGGCAAGTTATCCATAACCCAATGATGCTCATAGCCCATCATAATAGCCTTAGTAATAAATAAATATTTCTTGTAGTTAGCATGTGAGTATTTTTTCGAGCAAAGAACTTTACATGTCTCTTCTTTGCCAAATATAATCTCATA] [+] EMBL CD144568 [TAAAAGTGCCACTATAGTGCCAAACGGAGTAGCAGTTGCACTATCCAAAATCCAAAGTGCGGACATGTCAAAATAAGTAAACACTCGAAAAAACTAAGGCAGGACAAACTGTTGCAGTTAATATAACATTAGTCTTCCAACGCAAACCGCCGAAAAATTTGTAGATTCGAGCTGAAGCATAACCCGAAGAAGCTCCTAA ACAAGCGAATACAGCCAAAGCACAAGTCATCAATGCACC ACGATTGGCTGGACTTAAAAATCCAAGACATGCAAAAAATAGGGTGACCAATAACATTTGGAAGATTTGAACTCCTGAGCCAACAACAACTGAGAAAAGCATACCCCAGTTAGGCGGACGAAATACATCACCGTGAACTAATTTCC ] [-] EMBL CD144674 [ ACTATCCAAAATCCAAAGTGC GACAT TCAAAATAAG AAACACT GAAAAAACTAAGGCAGGACAAACTGTTGCAGTTAATATAACATTAGTCTTCCAACGCAAACCGCCGAAAAATTTGTAGATTCGAGCTGAAGCATAACCCGAAGAAGCTCCTAA ACAAGCGAATACAGCCAAAGCACAAGTCATCAATGCACC ACGATTGGCTGGACTTAAAAATCCAAGACATGC AAAAATAGGGTGACCAATAACATTTGGAAGATTTGAACTCCTGAGCCAACAACAACTGAGAAAAGCATACCCCAGTTAGGCGGACGAAATACATCACCGTGAACTAATTTCCA ] [-] EMBL CD144581 [ ACTATCCAAAATCCAAAGTGC GACAT TCAAAATAAG AAACACT GAAAAAACTAAGGCAGGACAAACTGTTGCTGTTAATATAACATTAGTCTTCCAACGCAAACCGCCGAAAAATTTGTAGATTCGAGCTGAAGCATAACCCGAAGAAGCTCCTAA ACAAGCGAATACAGCCAAAGCACAAGTCATCAATGCACC ACGATTGGCTGGACTTAAAAATCCAAGACATGCAAAAAATAGGGTGACCAATAACATTTGGAAGATTTGAACTCCTGAGCCAACAACAACTGAGAAAAGCATACCCCAGTTAGGCGGACGAAATACATCACCGTGAACTAATTTCCA ] [-] EMBL CD077928 [ GTGC GACA TCAACATAAG AAACACT GAAAAAACTAAGGCAGGACAAACTGTTGCAGTTAATATAACATTAGTCTTCCAACGCAAACCGCCGAAAAATTTGTAGATTCGAGCTGAAGCATAACCCGAAGAAGCTCCTAA ACAAGCGAATACAGCCAAAGCACAAGTCA CCTCGGACCGAATTCTTGGCTGc ] [+] EMBL CD093839 [ AAG AAACACT GAAAAAACTAAGGCAGGACAAACTGTTGCAGTTAATATAACATTAGTCTTCCAACGCAAACCGCCGAAAAATTTGTAGATTCGAGCTGAAGCATAACCCGAAGAAGCTCCTAAGACAAGCGAATACAGCCAAAGCACAAGTCATCAATGCACC ACGATTGGCTGGACTTAAAAATCCAAGACATGCAAAAAATAGGGTGACCAATAACATTTGGAAGACTTGAACTCCTGAGCCAACAACAACTGAGAAAAGCATACCCCAGTTAGGCGGACGAAATACATCACCGTGAACTAATTTCCAACCAGATTCCTCCTGAACAGCGGTCGCGCTTTCAAGTTCTGTGTAACGAGCAATATCACGACGTAGTGTACGCAGAAGAATGGTTGCAAGTAGACCAGAAAGGAATAATGTTAACACACATGAATTCAAAATA ] [+] EMBL CD186793 [ TTCCAACCAGATTCCTCCTGAACAGCGGTCGCGCTTTCAAGTTCTGTGTAACGAGCAATATCACGACGTAGTGTACGCAGAAGAATGGTTGCAAGTAGACCAGAAAGGAATAAAGTTAACACACATGAATTCAAAATAGATAACCACTGAATGTTACTTTGCGGCATTGTGTCCAAAATATAATCCCGACGAGATGACCATTTACGCGTAAGATCCTCTTCGAATGTTACGCTGTATGTGTAAGTTATTGTAAGTTCATCCTTTAAATCAGACGGGAGTATTAATGGCTGCTTTAATGTACAATCCGGTGCATTGTTTGGATGAGCAATACTACTAGGACTGGCAATCACTGAAAGAATACGTCCAGCTTTAACATTTCCTGAACTACTCCATGAATCTTTAACTGGATGATAGACAATGTGCAGACTGACATGATTTAACAAGAATGTACTATGTTTGGCCAAAGGTATTCCT ] [+] EMBL CD186911 [ TTGCGGCATTGTGTCCAAAATATAATCCCAACGAGATGACCATTTACGCGTAAGATCCTCTTCGAATGTTACGCTGTATGTGTAAGTTATTGTAAGTTCATCCTTTAAATCAGACGGGAGTATTAATGGCTGCTTTAATGTACAATCCGGTGCATTGTTTGGATGAGCAATACTACTAGGACTGGCAATCACTGAAAGAATACGTCCAGCTTTAACATTTCCTGAACTACTCCATGAATCTTTAACTGGATGATAGACAATGTGCAGACTGACATGATTTAACAAGATTGTACTATGTTTGGCCAAAGGTATTCCTAAACACACAGAATCCGATTTATCCTGATTACCCTCAAAGCATTCCAGTGGAATAGAAGTTTTACc ] [+] EMBL CD186947 [ TTGCGGCATTGTGT CAAAATAT ATCCCAACGAGATGACCATTTACGCGTAAGATCCTCTTCGAATGTTACGCTGTGTGTGTCAGTTATTGTAAGTTCATCCTTTAAATCAGACGGGAGTATTAATGGCTGCTTTAATGTACAATCCGGTGCATTGTTTGGATGAGCAATACTACTAGGACTGGCAATCACTGAAAGAATACGTCCAGCTTTAACATTTCCTGAACTACTCCATGAATCTTTAACTGGATGATAGACAATGTGCAGACTGACATGATTTAACAAGATTGTACTATGTTTGGCCAAAGGTATTCCTAAACACACAGAATCCGATTTATCCTGATTACCCTCAAAGCATCCA ] [+] EMBL CD187070 [ TTGCGGCATTGTGTCCAAAATATAATCCCAACGAGATGACCATTTACGCGTAAGATCCTCTTCGAATGTTACGCTGTATGTGTAAGTTATTGTAAGTTCATCCTTTAAATCAGACGGGAGTATTAATGGCTGCTTTAATGTACAATCCGGTGCATTGTTTGGATGAGCAATACTACTAGGACTGGCAATCACTGAAAGAATACGTCCAGCTTTAACATTTCCTGAACTACTCCATGAATCTTTAACTGGATGATAGACAATGTGCAGACTGACATGATTTAACAAGATTGTACTATGTTTGGCCAAAGGTATTCCTAAACACACAGAATCTGATTTATCCTGATTACCCTCAAAGCATCCAAGTGGAATAGAAGTTTTACAATATTTTTTTCCGTCTACAGCTTGTACACAAACTGTAACTGGCAAGTT ] [+] EMBL CD063636 [ AATATAATCCCAACGAGATGACCATTTACGCGTAAGATCCTCTTCGAATGTTACGCTGTATGTGTAAGTTATTGTAAGTTCATCCTTTAAATCAGACGGGAGTATTAATGGCTGCTTTAATGTACAATCCGGTGCATTGTTTGGATGAGCAATACTACTAGGACTGGCAATCACTGAAAGAATACGTCCAGCTTTAACATTTCCTGAACTACTCCATGAATCTTTAACTGGATGATAGACAATGTGCAGACTGACATGATTTAACAAGATTGTACTATGTTTGGCCAAAGGTATTCCTAAACACACAGAATCCGATTTATCCTGATTACCCTCAAAGCATCCAAGTGGAATAGAAGTTTTACAATATTTTTTTCCGTCTACAGCTTGTACACAAACTGTAACTGGCAAGTTATCCA ] [-] EMBL CD186919 [ CTGTATGTGTAAGTTATTGTAAGTTCATCCTTTAAATCAGACGGGAGTATTAATGGCTGCTTTAATGTACAATCCGGTGCATTGTTTGGATGAGCAATACTACTAGGACTGGCAATCACTGAAAGAATACGTCCAGCTTTAACATTTCCTGAACTACTCCATGAATCTTTAACTGGATGATAGACAATGTGCAGACTGACATGATTTAACAAGATTGTACTATGTTTGGCCAAAGGTATTCCTAAACACACAGAATCCGATTTATCCTGATTACCCTCAAAGCATCCAAGTGGAATAGAAGTTTTACAATATTTTTTTCCGTCTACAGCTTGTACACATACTGTAACTGGCAAGTTA ] [-] EMBL CD147421 [ ATTGTAGGTTCATCCTTTAAATCAGACGGGAGTATTAATGNCTGCTTTAATGTACAATCCGGTGCATTGTTTGGATGAGCAATACTACTAGGACTGGCAATCACTGAAAGAATACGTCCAGCTTTAACATTTCCTGAACTACTCCATGAATCTTTAACTGGATGATAGACAATGTGCAGACTGACATGATTTAACAAGATTGTACTATGTTTGGCCAAAGGTATTCCTAAACACACAGAATCCGATTTATCCTGATTACCCTCAAAGCATCCAAGTGGAATAGAAGTTTTACAATATTTTTTTCCGTCTACAGCTTGTACACAAACCGTAACTGGCAAGTTATCCATAACCCAATGATGCTCATAGCCCATCATAATAGCCTTAGTAATAAATAAATATTTCTTGTAGTTAGCATGTGAGTATTTTTTCGAGCAAAGAACTTTACATGTCTCTTCTTTGCCAAATATAATCTCATA] [+] EMBL CD187325 [ GTCCAGCTTTAACATTTCCTGAACTACTCCATGAATCTTTAACTGGATGATAGACAATGTGCAGACTGACATGATTTAACAAGATTGTACTATGTTTGGCCAAAGGTATTCCTAAACACACAGAATCCGATTTATCCTGATTACCCTCAAAGCATCCAAGTGGAATAGAAGTTTTACAATATTTTTTTCCGTCTACAGCTTGTACACAAACTGTAACTGGCAAGTT ] [+] EMBL CD187454 [ GTCCAGCTTTAACATTTCCTGAACTACTCCATGAATCTTTAACTGGATGATAGACAATGTGCAGACTGACATGATTTAACAAGATTGTACTATGTTTGGCCAGAGGTATTCCTAAACACACAGAATCCGATTTATCCTGATTACCCTCAAAGCATCCAAGTGGAATAGAAGTTTTACAATATTTTTTTCCGTCTACAGCTTGTACACAAACTGTAACTGGCAAGTT ] [-] EMBL CD132356 [ TCCAGCTTTAACATTTCCTGAACTACTCCATGAATCTTTAACTGGATGATAGACAATGTGCAGACTGACATGATTTAACAAGATTGTACAATGTTTGGCCAAAGGTATTCCTAAACACACAGAATCCGATTTATCCTGATTACCCTCAAAGCATCCAAGTGGAATAGAAGTTTTACAATATTTTTTTCCGTCTACAGCTTGTACACAAACTGTAACTGGCAAGTa ] consensusID : consensus_10436#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 498 fasta sequence [TTACTCTGCTCGTTAATAAGTTGACTTCAAAGAAGTCGTTTATCTCTTTCCGCTATGACTCGTTTGATTTCTGCAGTTTGTCCTCAGAGCTATCTCCGGTCGAAAATCTTGGTCAAGTGGTCTTTGGAGAACGTCTATCACCATCGAGTTATGAGATTATATTTGGCAAAGAAGAGACATGTAAAGTTCTTTGCTCGAAAAAATACTCAGACAGCTACTCTCTCAAAATGAACTTACTCCACTTCGACAATTTCTTGAGACGCCTCAGGAGGCGCAGCATCACCTTCAGAGAACTCTAACTTAATCAGATCCTTCTCGTCCAGATCAACGATCACACGACCACCAGAAACCAGCTTACCAAACAACAATTCGTCGGCCAACGCCTTACGGATCATATCCTGGATCAGACCTTTTCCATCGGGCGTGGGCTTCGATATTTGCGTGCATTTTGCTTGCTGGTGCACCAGGTACAGTTCCCGCAGCCATGACGCCATCACT] [+] EMBL CD093216 [TTACTCTGCTCGTTAATAAGTTGACTTCAAAGAAGTCGTTTATCTCTTTCCGCTATGACTCGTTTGATTTCTGCAGTTTGTCCTCAGAGCTATCTCCGGTCGAAAATCTTGGTCAAGTGGTCTTTGGAGAACGTCTATCACCATCGAGTTATGAGATTATATTTGGCAAAGAAGAGACATGTAAAGTTCTTTGCTCGAAAAAATACTCAGACAGCTACTCTCTCAAAATGAACTTACTCCACTTCGACAATTTCTTGAGACGCCTCAGGAGGCGCAGCATCACCTTCAGAGAACTCTAACTTAATCAGATCCTTCTCGTCCAGATCAACGATCACACGACCACCAGAAACCAGCTTACCAAACAACAATTCGTCGGCCAACGCCTTACGGATCATATCCTGGATCAGACCTTTTCCATCGGGCGTGGGCTTCGATATTTGCGTGCATTTTGCTTGCTGGTGCACCAGGTACAGTTCCCGCAGCCATGACGCCATCACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10436#0 TAAAAGTGCCACTATAGTGCCAAACGGAGTAGCAGTTGCACTATCCAAAATCCAAAGTGC 60 consensus_10436#1 ------------------------------------------------------------ consensus_10436#0 GACATTCAAAATAAGAAACACTGAAAAAACTAAGGCAGGACAAACTGTTGCAGTTAATAT 120 consensus_10436#1 ------------------------------------------------------------ consensus_10436#0 AACATTAGTCTTCCAACGCAAACCGCCGAAAAATTTGTAGATTCGAGCTGAAGCATAACC 180 consensus_10436#1 ------------------------------------------------------------ consensus_10436#0 CGAAGAAGCTCCTAAACAAGCGAATACAGCCAAAGCACAAGTCATCAATGCACCACGATT 240 consensus_10436#1 ------------------------------------------------------------ consensus_10436#0 GGCTGGACTTAAAAATCCAAGACATGCAAAAAATAGGGTGACCAATAACATTTGGAAGAT 300 consensus_10436#1 ------------------------------------------------------------ consensus_10436#0 TTGAACTCCTGAGCCAACAACAACTGAGAAAAGCATACCCCAGTTAGGCGGACGAAATAC 360 consensus_10436#1 ------------------------------------------------------------ consensus_10436#0 ATCACCGTGAACTAATTTCCAACCAGATTCCTCCTGAACAGCGGTCGCGCTTTCAAGTTC 420 consensus_10436#1 ------------------------------------------------------------ consensus_10436#0 TGTGTAACGAGCAATATCACGACGTAGTGTACGCAGAAGAATGGTTGCAAGTAGACCAGA 480 consensus_10436#1 ----------------------------TTACTCTGCT---CGTTAATAAGTTGACTTCA 29 *** * * * * **** *** * consensus_10436#0 AAGGAATAATGTTAACACACATGAATTCAAAATAGATAACCACTGAATGTTACTTTGCGG 540 consensus_10436#1 AAGAAGTCGT-TTATCTCTTTCCGCTATGACTCGTTTGATTTCTGCA-GTTTGTCCTCAG 87 *** * * * *** * * * * * * *** * *** * * * consensus_10436#0 CATTGTGTCCAAAATATAATCCCAACGAGATGACCATTTACGCGTAAGATCCTCTTCGAA 600 consensus_10436#1 AGCTATCTCCGGTCGAAAATCTTGGTCAAGTGGTCTTTGG------AGAACGTCTATCAC 141 * * *** * **** * ** * ** *** * *** * consensus_10436#0 TGTTACGCTGTATGTGTAAGTTATTGTAAGTTCATCCTTTAAATCAGACGGGAGTATTAA 660 consensus_10436#1 CATCGAGTTATG-----AGATTAT-----ATTTGGCAAAGAAGAGACATGTAAAGTTCTT 191 * * * * * **** ** * ** * * * * * consensus_10436#0 TGGCTGCTTTAATGTACAATCCGGTGCATTGTTTGGATGAGCAATACTACTAGGACTGGC 720 consensus_10436#1 TGCTCGAAAAAATACTCAGACAGCTACTCTCTCAAAATGAACT-TACTCC--ACTTCGAC 248 ** * *** ** * * * * * * **** * **** * * * consensus_10436#0 AATCACTGAAAGAATACGTCCAGCTTTAACATTTCCTGAACTACTCCATGAATCTTTAAC 780 consensus_10436#1 AATTTCTTGAGACGCCTCAGGAGGCGCAGCATCACCT--------TCAGAGAACTCTAAC 300 *** ** * ** * *** *** ** * ** **** consensus_10436#0 TGGAT--GATAGACAATGTGCAGACTGAC-ATGATTTAACAAGATTGTACTATGTTTGGC 837 consensus_10436#1 TTAATCAGATCCTTCTCGTCCAGATCAACGATCACACGACCACCAGAAACCA-GCTTACC 359 * ** *** ** **** ** ** * ** * ** * * ** * consensus_10436#0 CAAAGGTATTCCTAAACACACAGAATCCGATTTATCCTGATTACCCTCAAAGCATCCAAG 897 consensus_10436#1 AAACAACAATTC--GTCGGCCAACGCCTTACGGATCATATCCTGGATCAGACCTTTTCCA 417 ** * * * * ** * * *** * *** * * * consensus_10436#0 TGGAATAGAAGTTTTACAATATTTTTTTCCGTCTACAGCTTGTACACAAACTGTAACTGG 957 consensus_10436#1 TCGGGCGTGGGCTT--CGATATTT------GCGTGCATTTTGCTTGCTGG-TGCACCAGG 468 * * * ** * ****** * * ** *** * ** * * ** consensus_10436#0 CAAGTTATCCATAACCCAATGATGCTCATAGCCCATCATAATAGCCTTAGTAATAAATAA 1017 consensus_10436#1 TACAGTTCCCGCAGCC--ATGACGC-CATCACT--------------------------- 498 * * ** * ** **** ** *** * consensus_10436#0 ATATTTCTTGTAGTTAGCATGTGAGTATTTTTTCGAGCAAAGAACTTTACATGTCTCTTC 1077 consensus_10436#1 ------------------------------------------------------------ consensus_10436#0 TTTGCCAAATATAATCTCATA 1098 consensus_10436#1 --------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||