These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10463#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 596 fasta sequence [AAGTTTATCACTGTAACCTGCAAAGAGAGTTTGTCCATCAGATGACCAAGCCAAGGATAAACACTGGGGAGGTTCACGGCCAGCACCAGCTGCCATAACATCAGGCTTCAGCTCATCCACAATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCAATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAATCCCACAGCATGGCTTGGCCATCCTTGCCACCAGAAGCACAGAGTGATCCATCAGGTGACACTGTAACACAGTTCAAGAACTGAGTGTGACCAAAGTGATTGGTCTTAAGTTTGCAGTTGGTCAAGTTCCATACCTTTACAACTTTATCCCAGCCACATGATACAATAATTGGGTTAGAAGCATTGGGTGAGAAACGCACACATGAAACCCAGTCTTTGTGTGTGTCTTCCTGTACTGTGTACTTGCAAACTCCAAGGGTATTCCACAGTTTGATGCTCTTGTCACGAGATGCAGAGACAATCTGCCTATTGTCAGCTGAGAAAGCCACACTCAAAA] [-] EMBL CD130135 [AAGTTTATCACTGTAACCTGCAAAGAGAGTTTGTCCATCAGATGACCAAGCCAAGGATAAACACTGGGGAGGTTCACGGCCAGCACCAGCTGCCATAACATCAGGCTTCAGCTCATCCACAATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCAATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAAT ] [-] EMBL CD130163 [ AGTTTATCACTGTANCCTGCAAAGAGAGTTTGTCCATCAGATGACCAAGCCAAGGATAAACACTGGGGAGGTTCACGGCCAGCACCAGCTGCCATAACATCAGGCTTCAGCTCATCCACAATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCAATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAAT ] [+] EMBL CD130207 [ ACTGGGGAGGTTCACGGCCAGCACCAGCTGCCATAACATCAGGCTTCAGCTCATCCACAATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCAATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAA ] [+] EMBL CD130056 [ ACTGGGGAGGTTCACGGCCAGCACCAGCTGCCATAACATCAGGCTTCAGCTCATCCACAATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCAATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAA ] [+] EMBL CD130091 [ ACTGGGGAGGTTCACGGCCAGCACCAGCTGCCATAACATCAGGCTTCAGCTCATCCACAATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCAATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAA ] [+] EMBL CD130142 [ CTGGGGAGGTTCACGGCCAGCACCAGCTGCCATAACATCAGGCTTCAGCTCATCCACAATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCAATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAA ] [+] EMBL CD130084 [ CTGGGGAGGTTCACGGCCAGCACCAGCTGCCATAACATCAGGCTTCAGCTCATCCACAATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCAATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAA ] [-] EMBL CD130199 [ CTGGGGAGGTTCACGGCCAGCACCAGCTGCCATAACATCAGGCTTCAGCTCATCCACAATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCAATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAAT ] [-] EMBL CD130119 [ CTGGGGAGGTTCACGGCCAGCACCAGCTGCCATAACATCAGGCTTCAGCTCATCCACAATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCAATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAAT ] [+] EMBL CD130103 [ CTGGGGAGGTTCACGGCCAGCACCAGCTGCCATAACATCAGGCTTCAACTCATCCACAATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCAATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAA ] [-] EMBL CD130111 [ GTTCACGGCCAGCACCAGCTGCCATACNATCAGGCTTCAGCTCATCCACAATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCAATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAAT ] [-] EMBL CD130147 [ tGCACCAGCTGCCATAACATCAGGCTTCAGCTCATCCACAATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCAATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAAT ] [-] EMBL CD130130 [ AGGCTTCAGCTCATCCACAATTACTTTTCCCTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCAATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCCCCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAAT ] [+] EMBL CD142915 [ AAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAAGTGCTTGCCTTCATTTAAATCCCACAGCATGGCTTGGCCATCCTTGCCACCAGAAGCACAGAGTGATCCATCAGGTGACACTGTAACACAGTTCAAGAACTGAGTGTGACCAAAGTGATTGGTCTTAAGTTTGCAGTTGGTCAAGTTCCATACCTTTACAACTTTATCCCAGCCACATGATACAATAATTGGGTTAGAAGCATTGGGTGAGAAACGCACACATGAAACCCAGTCTTTGTGTGTGTCTTCCTGTAC ] [+] EMBL CD135558 [ CAGAAGCACAGAGTGATCCATCAGGTGACACTGTAACACAGTTCAAGAACTGAGTGTGACCAAAGTGATTGGTCTTAAGTTTGCAGTTGGTCAAGTTCCATACCTTTGCAACTTTATCCCAGCCACATGATACAATAATTGGGTTAGAAGCATTGGGAGAGAAACGCACACATGAAACCCAGTCTTTGTGTGTGTCTTCCTGTACTGTGTACTTGCAAACTCCAAGGGTATTCCACAGTTTGATGCTCTTGTCACGAGATGCAGAGACAATCTGCCTATTGTCAGCTGAGAAAGCCACACTCAAAA] consensusID : consensus_10463#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 199 fasta sequence [ATTCGAACCTGAAAGTCATTGGGGAGCGGCACACGTGAAACCCAGTCTTTGTGTGTGTCTTCCTGTACTGTGTACTTGCAAACTCCAAGGGTATTCCACAGTTTGATGCTCTTGTCACGAGATGCAGAGACAATCTGCCTATTGTCAGCTGAGAAAGCCACACTCAAAACATCTTTCTCATGTCCAACAAAGCGTCTAG] [-] EMBL CD135890 [ATTCGAACCTGAAAGTCATTGGGGAGCGGCACACGTGAAACCCAGTCTTTGTGTGTGTCTTCCTGTACTGTGTACTTGCAAACTCCAAGGGTATTCCACAGTTTGATGCTCTTGTCACGAGATGCAGAGACAATCTGCCTATTGTCAGCTGAGAAAGCCACACTCAAAACATCTTTCTCATGTCCAACAAAGCGTCTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10463#0 AAGTTTATCACTGTAACCTGCAAAGAGAGTTTGTCCATCAGATGACCAAGCCAAGGATAA 60 consensus_10463#1 ------------------------------------------------------------ consensus_10463#0 ACACTGGGGAGGTTCACGGCCAGCACCAGCTGCCATAACATCAGGCTTCAGCTCATCCAC 120 consensus_10463#1 ------------------------------------------------------------ consensus_10463#0 AATTACTTTTCCTTCAAGATCCCAAATCTTAATGCTTGGGCCAGTAGCAGCACACAGCCA 180 consensus_10463#1 ------------------------------------------------------------ consensus_10463#0 ATAACGGTTGGGTGAAAAGCACATAGCATTTATGCAGTCTCCACCATCTAAGGTGTACAA 240 consensus_10463#1 ------------------------------------------------------------ consensus_10463#0 GTGCTTGCCTTCATTTAAATCCCACAGCATGGCTTGGCCATCCTTGCCACCAGAAGCACA 300 consensus_10463#1 ------------------------------------------------------------ consensus_10463#0 GAGTGATCCATCAGGTGACACTGTAACACAGTTCAAGAACTGAGTGTGACCAAAGTGATT 360 consensus_10463#1 ------------------------------------------------------------ consensus_10463#0 GGTCTTAAGTTTGCAGTTGGTCAAGTTCCATACCTTTACAACTTTATCCCAGCCACATGA 420 consensus_10463#1 ------------------------------------------------------------ consensus_10463#0 TACAATAATTGGGTTAGAAG--CATTGGGTGAGAAACGCACACATGAAACCCAGTCTTTG 478 consensus_10463#1 ------ATTCGAACCTGAAAGTCATTGGG---GAGCGGCACACGTGAAACCCAGTCTTTG 51 * * * *** ******* ** ****** **************** consensus_10463#0 TGTGTGTCTTCCTGTACTGTGTACTTGCAAACTCCAAGGGTATTCCACAGTTTGATGCTC 538 consensus_10463#1 TGTGTGTCTTCCTGTACTGTGTACTTGCAAACTCCAAGGGTATTCCACAGTTTGATGCTC 111 ************************************************************ consensus_10463#0 TTGTCACGAGATGCAGAGACAATCTGCCTATTGTCAGCTGAGAAAGCCACACTCAAAA-- 596 consensus_10463#1 TTGTCACGAGATGCAGAGACAATCTGCCTATTGTCAGCTGAGAAAGCCACACTCAAAACA 171 ********************************************************** consensus_10463#0 ---------------------------- consensus_10463#1 TCTTTCTCATGTCCAACAAAGCGTCTAG 199 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||