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Schistosoma mansoni
cluster # 10475 cluster # 10475       Sequences # 17       consensus # 6


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10475#0 length = 873 sequences # 4  
consensus_10475#1 length = 706 sequences # 5  
consensus_10475#2 length = 492 sequences # 4  
consensus_10475#3 length = 362 sequences # 1  
consensus_10475#4 length = 278 sequences # 1  
consensus_10475#5 length = 125 sequences # 2  

consensusID : consensus_10475#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 873
fasta sequence
                              [CACACCCATGTCAAAATCCAAACTGTAACCGAATGTTTGCTACAATGAAAGAAATGAACAGACACTACAGAAATGATCACAAGACACACAACACAGACCCCATATCAACAACATCAAACTTAAAATGCCCTCTATCAGACTGCAACAAATCATACACAACACTCGGATGGCTAAACAGACATATAAAATCATGTCATCCTCAGTATTCTCAACAACATATTGAACACAACAATAACACACAGCACAAAACACACACCCTAAAGACAAAAAAACACACAACACTGTCCATTTTCAGGATGCAACAAAACACTACCAACGGCAAAAGGTATCATCAATCATTGCTATGTAGTACACAGATGGTCAGCAATCACTGGACAGGAAGTAAAGCCAAAGAAAAAAATAACTGCGAAAACAGCTATTGAGCCCCGGTAGTTGTGCCTTGCTTCATTGTAGCCTCTACTCCAGAAGGGCCAATAGGCTTCACCAACCAGTTTGGCTGGGAGGGGCACCACAGGGATGGGAGGCGAAATCCGACTCACACGTCCTCGTCGTGCCTCCTGGATCATGGGATTGTTTCCATGAACTAACGTGAGCGGTTAATCGAGGGTGGTGGAGATCGGACTAATCACCCACTCTACCTATACCCAAAATTCGA-TTACGAGTGCTACAAGGAATCATTGCATAGCTATTGAGAGTGCAAAAAGAGAGAGAAACAAAAAGAGAGAGAAAAAATAATAAAAAAGATTGCAAAAATAAAGAGAGAAAAAGAGAGAAAGAAAAAAAAAAGTCTGCCCAAACAAAAACATAAAGAAAATGACAAAAAAATGGGTACGTGTGAGTGTTATGTAATGGTTTCGCNGTGGCATGCAGAAA]

[+] EMBL CD098186             [CACACCCATGTCAAAATCCAAACTGTAACCGAATGTTTGCTACAATGAAAGAAATGAACAGACACTACAGAAATGATCACAAGACACACAACACAGACCCCATATCAACAACATCAAACTTAAAATGCCCTCTATCAGACTGCAACAAATCATACACAACACTCGGATGGCTAAACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD131887             [                                                                                AACACACACAACACAGACCCCATATCAACAACATCAAACTTAAAATGCCCTCTATCAGACTGCAACAAATCATACACAACACTCGGATGGCTAAACAGACATATAAAATCATGTCATCCTCAGTATTCTCAACAACATATTGAACACAACAATAACACACAGCACAAAACACACACCCTAAAGACAAAAAAACACACAACACTGTCCATTTTCAGGATGCAACAAAACACTACCAACGGCAAAAGGTATCATCAATCATTGCTATGTAGTACACAGATGGTCAGCAATCACTGGACAGGAAGTAAAGCCAAAGAAAAAAATAACTGCGAAAACAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD064552             [                                                                                                                                                                                                                                                                                                                                        TCATCAATCATTGCTATGTAGTACACAGATGGTCAGCAATCNCTGGACAGGAAGTAAAGCCAAAGAAAAAAATANCTGCGAAAACAGCTATTGAGCCCCGGTAGTTGTGCCTTGCTTCATTGTAGCCTCTACTCCAGAAGGGCCAATAGGCTTCACCAACCAGTTTGGCTGGGAGGGGCACCACAGGGATGGGAGGCGAAATCCGACTCACACGTCCTCGTCGTGCCTCCTGGATCATGGGATTGTTTCCATGAACTAACGTGAGCGGTTAATCGAGGGTGGTGGAGATCGGACTAATCACCCACTCTACCTATACCCAAAATTCGA TTACGAGTGCTACAAGGAATCATTGCATAGCTATTGAGAGTGCAAAAAGAGAGAGAAACAAAAAGAGAGAGAAAAAATAATAAAAAAGATTGCAAAAATAAAGAGAGAAAAAGAGAGAAAGAAAAAAAAAAGTCTGCCCAAACAAAAACATAAAGAAAATGACAAAAAAATGGGTACGTGTGAGTGTTATGTAATGGTTTCGCNGTGGCATGCAGAAA]
[-] EMBL CD144049             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TCGATTTACGAGTGCTACAAGGAATCATTGCATAGCTATTGAGAGTGCAAAAAGAGAGAGAAACAAAAAGAGAGAGAAAAAATAATAAAAAAGATTGCAAAAATAAAGAGAGAAAAAGAGAGAAAG  AAAAAAAAGTCTGCCCAAACAAAAACATAAAGAAAATGACAAAAAAAat                                              ]


>consensus_10475#0 CACACCCATGTCAAAATCCAAACTGTAACCGAATGTTTGCTACAATGAAAGAAATGAACA GACACTACAGAAATGATCACAAGACACACAACACAGACCCCATATCAACAACATCAAACT TAAAATGCCCTCTATCAGACTGCAACAAATCATACACAACACTCGGATGGCTAAACAGAC ATATAAAATCATGTCATCCTCAGTATTCTCAACAACATATTGAACACAACAATAACACAC AGCACAAAACACACACCCTAAAGACAAAAAAACACACAACACTGTCCATTTTCAGGATGC AACAAAACACTACCAACGGCAAAAGGTATCATCAATCATTGCTATGTAGTACACAGATGG TCAGCAATCACTGGACAGGAAGTAAAGCCAAAGAAAAAAATAACTGCGAAAACAGCTATT GAGCCCCGGTAGTTGTGCCTTGCTTCATTGTAGCCTCTACTCCAGAAGGGCCAATAGGCT TCACCAACCAGTTTGGCTGGGAGGGGCACCACAGGGATGGGAGGCGAAATCCGACTCACA CGTCCTCGTCGTGCCTCCTGGATCATGGGATTGTTTCCATGAACTAACGTGAGCGGTTAA TCGAGGGTGGTGGAGATCGGACTAATCACCCACTCTACCTATACCCAAAATTCGATTACG AGTGCTACAAGGAATCATTGCATAGCTATTGAGAGTGCAAAAAGAGAGAGAAACAAAAAG AGAGAGAAAAAATAATAAAAAAGATTGCAAAAATAAAGAGAGAAAAAGAGAGAAAGAAAA AAAAAAGTCTGCCCAAACAAAAACATAAAGAAAATGACAAAAAAATGGGTACGTGTGAGT GTTATGTAATGGTTTCGCNGTGGCATGCAGAAA



consensusID : consensus_10475#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 706
fasta sequence
                              [CTAACAGTGAGTCCCTATATAGCTGTCCCCTATCTGACTGTAATAAGATGTATAAGACGTTGGGTTGGTTAATTAGACACATGCAATCATGCCACCCACAATGTAACCTAGCTAAAGCTGAACCAAAAACCAAAGTTAATAAAATTGACTCCAAGAAGGATCAAAATAAATGTCCATACCCAGGCTGCAACAAAACTTTACCGACTAAGAAAGGTATAATTAATCACTGCTATGTAGTACATAGGTGGTCAGCAATCACCGGACAGGAAGTAAAACCAAAGACAAAAATAATGCAAAAACAACTATTGCGCCCCGGTAGTTGTGCCGTGCTTCGATGTAGCCTCTTCTCCAGAAGGGCCTACTAGGCTTCACCAACTAGTTTGGCTGGAAGGGGCACCACAGGGATGGGAGGTAAAATCCGACTCACACGTCCTCGTCGTGCCTCCTGGATCATGGGACTGATTCCATGAACTAACGTGAGCGGTAACCCGGGTGG-TGGAGATCGGGCTAATCACCCTCTCTACCTATACCCACCCCTTGATTACGAAAGCTACAAAGAAACATTGCACAATTATACCTGGAATAAAAAAAGACAAAAAAAATGCCCAAAATTACCAAAAACTTAAATTTGGTTTATGGATTATCCGGGGTTGCTCACAAGAAAGCAAACTCCAAGAGATAGCAGAGCAAATAGCTGAACGCAAGT]

[+] EMBL CD066133             [CTAACAGTGAGTCCCTATATAGCTGTCCCCTATCTGACTGTAATAAGATGTATAAGACGTTGGGTTGGTTAATTAGACACATGCAATCATGCCACCCACAATGTAACCTAGCTAAAGCTGAACCAAAAACCAAAGTTAATAAAATTGACTCCAAGAAGGATCAAAATAAATGTCCATACCCAGGCTGCAACAAAACTTTACCGACTAAGAAAGGTATAATTAATCACTGCTATGTAGTACATAGGTGGTCAGCAATCACCGGACAGGAAGTAAAACCAAAGACAAAAATAATGCAAAAACAACTATTGCGCCCCGGTAGTTGTGCCGTGCTTCGATGTAGCCTCTTCTCCAGAAGGGCCTACTAGGCTTCACCAACTAGTTTGGCTGGAAGGGGCACCACAGGGATGGGAGGCTTAATCCGACTCACACGTCCTCGTCGTGCCTCCTGGATCATGGGACTGATTCCATGAACTAACGTGAGCGGTAACCCGGGTGGNTGGAGATCGGGCTAATCACCCTCTCTACCTATACCCACCCCTTGATTACGAAAGCTACAAAGAGACATTGCACAATTATACCTGGAATAAAAAAAGAC AAAAAAATGCCCAAAATTACCAAAAACTTAAATTTGGTTTATGGAATGTCCGGNGTTGTTCACAAGAAAa                                         ]
[-] EMBL CD064217             [            CCCTATATAGCTGTCCCCTAACTCACTGTAATAAGACGTATAAGACGTTGGGTTGGTTAAATAGACACAGGCAATCATGCCACCCACAATGTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD186937             [                                                                                                                                                                                                                                                                                                                                                                                                                           tTAAAATCCGACTCACACGTCCTCGTCGTGCCTCCTGGATCATGGGACTGATTCCATGAACTAACGTGAGCGGTAACCCGGGTGG TGGAGATCGGGCTAATCACCCTCTCTACCTATACCCACCCCTTGATTACGAAAGCTACAAAGAAACATTGCACAATTATACCTGGAATAAAAAAAGACAAAAAAAATGCCCAAAATTACCAAAAACTTAAATTTGGTTTATGGATTATCCGGGGTTGCTCACAAGAAAGCAAACTCCAAGAGATAGCAGAGCAAATAGCTGAACGCAAG ]
[-] EMBL CD186880             [                                                                                                                                                                                                                                                                                                                                                                                                                            TAAAATCCGACTCACACGTCCTCGTCGTGCCTCCTGGATCATGGGACTGATTCCATGAACTAACGTGAGCGGTAACCCGGGTGG TGGAGATCGGGCTAATCACCCTCTCTACCTATACCCACCCCTTGATTACGAAAGCTACAAAGAAACATTGCACAATTATACCTGGAATAAAAAAAGACAAAAAAAATGCCCAAAATTACCAAAAACCTAAATTTGGTTTATGGATTATCCGGGGTTGCTCACAAGAAAGCAAACTCCAAGAGATAGCAGAGCAAATAGCTGAACGCAAGT]
[-] EMBL CD132322             [                                                                                                                                                                                                                                                                                                                                                                                                                                ATCCGACTCACACGTCCTCGTCGTGCCTCCTGGATCATGGGACTGATTCCATGAACTAACGTGAGCGGTAACCCGGGTGG TGGAGATCGGGCTAATCACCCTCTCTACCTATACCCACCCCTTGATTACGAAAGCTACAAAGAAACATTGCACAATTATACCTGGGATAAAAAAAAACAAAAAAAATGCCCAAAATTACCAAAAACTTAAATTTGGTTTATGGATTATCCGGGGTTGCTCACAAGAAAGCAAACTCCAAGAGATAGCAGAGCAAATAGCTGAACGCAAGT]


>consensus_10475#1 CTAACAGTGAGTCCCTATATAGCTGTCCCCTATCTGACTGTAATAAGATGTATAAGACGT TGGGTTGGTTAATTAGACACATGCAATCATGCCACCCACAATGTAACCTAGCTAAAGCTG AACCAAAAACCAAAGTTAATAAAATTGACTCCAAGAAGGATCAAAATAAATGTCCATACC CAGGCTGCAACAAAACTTTACCGACTAAGAAAGGTATAATTAATCACTGCTATGTAGTAC ATAGGTGGTCAGCAATCACCGGACAGGAAGTAAAACCAAAGACAAAAATAATGCAAAAAC AACTATTGCGCCCCGGTAGTTGTGCCGTGCTTCGATGTAGCCTCTTCTCCAGAAGGGCCT ACTAGGCTTCACCAACTAGTTTGGCTGGAAGGGGCACCACAGGGATGGGAGGTAAAATCC GACTCACACGTCCTCGTCGTGCCTCCTGGATCATGGGACTGATTCCATGAACTAACGTGA GCGGTAACCCGGGTGGTGGAGATCGGGCTAATCACCCTCTCTACCTATACCCACCCCTTG ATTACGAAAGCTACAAAGAAACATTGCACAATTATACCTGGAATAAAAAAAGACAAAAAA AATGCCCAAAATTACCAAAAACTTAAATTTGGTTTATGGATTATCCGGGGTTGCTCACAA GAAAGCAAACTCCAAGAGATAGCAGAGCAAATAGCTGAACGCAAGT



consensusID : consensus_10475#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 492
fasta sequence
                              [TATCAAATCATGTCACCCTCAGTACTCTCAACAACAAACTGAAAACAACAACAACAATAACACACACCCACAAAACAAAGAACACACAACAATGCCCATTTCCAGGTTGCAACAAAACACTTCCAACGGCAAAAGGTATCATCAATCACTGCTATGTTGTACACAGATGGTCAGCAATCACCGGACAGGAAGTAGAGCCAAAGAAAAAAATAACTGCGAAAACAGCTATTGAGCCCCGGTAGTTGTGCCTTGCTTCATTGTAGCCTCTTCTCCAGAAGGGCTAATAGGCTTTACCAACCAGTTTGGCTGGAAGGGGCACCACAGGCATTGGGGAGCGAAATCCGACTCACACGTCCTCGTCGTGCCTTCTGGATCATGGCACTGTTTCCATGACCTAACGTATAGCTATCTTCCAATAACTCAATTCGGTTTTAGCAAAAATCTATCCACAATTCAAGCAATAACGACCATGAGACATACAATTCAATCCGC]

[+] EMBL CD121767             [TATCAAATCATGTCACCCTCAGTACTCTCAACAACAAACTGAAAACAACAACAACAATAACACACACCCACAAAACAAAGAACACACAACAATGCCCATTTCCAGGTTGCAACAAAACACTTCCGACGGCAAAAGGTATCATCAATCACTGCTATGTTGTACACAGATGGTCAGCAATCACCGGACAGGAAGTAGAGCCAAAGAAAAAAATAACTGCGAAAACAGCTATTGAGCCCCGGTAGTTGTGCCTTGCTTCATTGTAGCCTCTTCTCCAGAAGGGCTAATAGGCTTTACCAACCAGTTTGGCTGGAAGGGGCACCACAGGCATTGGGGAGCGAAATCCGACTCACACGTCCTCGTCGTGCCTTCTGGATCATGGCACTGTTTCCATGACCTAACGTATAGCTATCTTCCAATAACTCAATTCGGTTTTAGCAAAAATCTATCCACAATTCAAGCAATAACGAGCATGAGACATACAATTCAATCCGC]
[+] EMBL CD121769             [TATCAAATCATGTCACCCTCAGTACTCTCAACAACAAACTGAAAACAACAACAACAATAACACACACCCACAAAACAAAGAACACACAACAATGCCCATTTCCAGGTTGCAACAAAACACTTCCAACGGCAAAAGGTATCATCAATCACTGCTATGTTGTACACAGATGGTCAGCAATCACCGGACAGGAAGTAGAGCCAAAGAAAAAAATAACTGCGAAAACAGCTATTGAGCCCCGGTAGTTGTGCCTTGCTTCATTGTAGCCTCTTCTCCAGAAGGGCTAATAGGCTTTACCAACCAGTTTGGCTGGAAGGGGCACCACAGGCATTGGGGAGCGAAATCCGACTCACACGTCCTCGTCGTGCCTTCTGGATCATGGCACTGTTTCCATGACCTAACGTATAGCTATCTTCCAATAACTCAATTCGGTTTTAGCAAAAATCTATCCACAATTCAAGCAATAACGACCATGAGACATACAA          ]
[+] EMBL CD121817             [TATCAAATCATGTCACCCTCAGTACTCTCAACAACAAACTGAAAACAACAACAACAATAACACACACCCACAAAACAAAGAACACACAACAATGCCCATTTCCAGGTTGCAACAAAACACTTCCAACGGCAAAAGGTATCATCAATCACTGCTATGTTGTACACAGATGGTCAGCAATCACCGGACAGGAAGTAGAGCCAAAGAAAAAAATAACTGCGAAAACAGCTATTGAGCCCCGGTAGTTGTGCCTTGCTTCATTGTAGCCTCTTCTCCAGAAGGGCTAATAGGCTTTACCAACCAGTTTGGCTGGAAGGGGCACCACAGGCATTGGGGAGCGAAATCCGACTCACACGTCCTCGTCGTGCCTTCTGGATCATGGCACTGTTTCCATGACCTAACGTATAGCTATCTTCCAATAACTCAATTCGGTTTTAGCAAAAATCTATCCACAATTCAAGCAATAACGACCA                      ]
[+] EMBL CD121688             [TATCAAATCATGTCACCCTCAGTACTCTCAACAACAAACTGAAAACAACAACAACAATAACACACACCCACAAAACAAAGAACACACAACAATGCCCATTTCCAGGTTGCAACAAAACACTTCCAACGGCAAAAGGTATCATCAATCACTGCTATGTTGTACACAGATGGTCAGCAATCACCGGACAGGAAGTAGAGCCAAAGAAAAAAATAACTGCGAAAACAGCTATTGAGCCCCGGTAGTTGTGCCTTGCTTCATTGTAGCCTCTTCTCCAGAAGGGCTAATAGGCTTTACCAACCAGTTTGGCTGGAAGGGGCACCACAGGCATTGGGGAGCGAAATCCGACTCACACGTCCTCGTCGTGCCTTCTGGATCATGGCACTGTTTCCATGACCTAACGTATAGCTATCTTCCAATAACTCAATTCGGTTTTAGCAAAAATCTATCC                                            ]


>consensus_10475#2 TATCAAATCATGTCACCCTCAGTACTCTCAACAACAAACTGAAAACAACAACAACAATAA CACACACCCACAAAACAAAGAACACACAACAATGCCCATTTCCAGGTTGCAACAAAACAC TTCCAACGGCAAAAGGTATCATCAATCACTGCTATGTTGTACACAGATGGTCAGCAATCA CCGGACAGGAAGTAGAGCCAAAGAAAAAAATAACTGCGAAAACAGCTATTGAGCCCCGGT AGTTGTGCCTTGCTTCATTGTAGCCTCTTCTCCAGAAGGGCTAATAGGCTTTACCAACCA GTTTGGCTGGAAGGGGCACCACAGGCATTGGGGAGCGAAATCCGACTCACACGTCCTCGT CGTGCCTTCTGGATCATGGCACTGTTTCCATGACCTAACGTATAGCTATCTTCCAATAAC TCAATTCGGTTTTAGCAAAAATCTATCCACAATTCAAGCAATAACGACCATGAGACATAC AATTCAATCCGC



consensusID : consensus_10475#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 362
fasta sequence
                              [AATCCGACTCACACGTCCTCGTCGTGCCTCCTGGATCATGGGACTGATTCCATGACCTAACGTGGGCGGTTAATCGAGGGTGGTGGAGATCGGACTAATCACCCACTCTACCTATACCCAAAATTCGATTACGAGTGCTACAAGGAATCATTGCATAGCTATTGAGAGTGCAAAAAGAGAGAGAAAAAATATTTAAAAAGATTGCAAAAATAAAGAGAGAAAAAGAGAGAAAGAAAAAAAAGTCTGCCCAAACAAAAACATAAAGAAAATGACAAAAAAGAATGGGTACGTGTGAGTGTTATGTAATGGTTCCGCGTGGCATGCAGAAACAGCTATCTCACCCCGGTAGTTGTGCCGTGCTG]

[+] EMBL CD200532             [AATCCGACTCACACGTCCTCGTCGTGCCTCCTGGATCATGGGACTGATTCCATGACCTAACGTGGGCGGTTAATCGAGGGTGGTGGAGATCGGACTAATCACCCACTCTACCTATACCCAAAATTCGATTACGAGTGCTACAAGGAATCATTGCATAGCTATTGAGAGTGCAAAAAGAGAGAGAAAAAATATTTAAAAAGATTGCAAAAATAAAGAGAGAAAAAGAGAGAAAGAAAAAAAAGTCTGCCCAAACAAAAACATAAAGAAAATGACAAAAAAGAATGGGTACGTGTGAGTGTTATGTAATGGTTCCGCGTGGCATGCAGAAACAGCTATCTCACCCCGGTAGTTGTGCCGTGCTG]


>consensus_10475#3 AATCCGACTCACACGTCCTCGTCGTGCCTCCTGGATCATGGGACTGATTCCATGACCTAA CGTGGGCGGTTAATCGAGGGTGGTGGAGATCGGACTAATCACCCACTCTACCTATACCCA AAATTCGATTACGAGTGCTACAAGGAATCATTGCATAGCTATTGAGAGTGCAAAAAGAGA GAGAAAAAATATTTAAAAAGATTGCAAAAATAAAGAGAGAAAAAGAGAGAAAGAAAAAAA AGTCTGCCCAAACAAAAACATAAAGAAAATGACAAAAAAGAATGGGTACGTGTGAGTGTT ATGTAATGGTTCCGCGTGGCATGCAGAAACAGCTATCTCACCCCGGTAGTTGTGCCGTGC TG



consensusID : consensus_10475#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 278
fasta sequence
                              [AGGATTCTGCGTAAGCAGTGCAAAAACAACTATCCCATGTACTAATGTGAGTGGTAATGTGGGTGGTAGAGATCGGCCTAATCAACCATTCTACCTATACCCGCAAACGATTACGAATGCTACAAAGAGTCATTGCGTAACTATTGAGGGTTCAAAAAGATGGTTATATTGAGTTTGCCCGAAAATAAAAAATAAAAAAAGAATGAAAGTTTTATGTAAGGATTCTGCGTAAGCAGTGCAAAAACAACTATCCCGCCCCGGTAGTTGTGCCGTGCTTC]

[+] EMBL CD178237             [AGGATTCTGCGTAAGCAGTGCAAAAACAACTATCCCATGTACTAATGTGAGTGGTAATGTGGGTGGTAGAGATCGGCCTAATCAACCATTCTACCTATACCCGCAAACGATTACGAATGCTACAAAGAGTCATTGCGTAACTATTGAGGGTTCAAAAAGATGGTTATATTGAGTTTGCCCGAAAATAAAAAATAAAAAAAGAATGAAAGTTTTATGTAAGGATTCTGCGTAAGCAGTGCAAAAACAACTATCCCGCCCCGGTAGTTGTGCCGTGCTTC]


>consensus_10475#4 AGGATTCTGCGTAAGCAGTGCAAAAACAACTATCCCATGTACTAATGTGAGTGGTAATGT GGGTGGTAGAGATCGGCCTAATCAACCATTCTACCTATACCCGCAAACGATTACGAATGC TACAAAGAGTCATTGCGTAACTATTGAGGGTTCAAAAAGATGGTTATATTGAGTTTGCCC GAAAATAAAAAATAAAAAAAGAATGAAAGTTTTATGTAAGGATTCTGCGTAAGCAGTGCA AAAACAACTATCCCGCCCCGGTAGTTGTGCCGTGCTTC



consensusID : consensus_10475#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 125
fasta sequence
                              [CGTGCTGTATTGAGGACAGCTTCTAGTCTAGACCAGTCAGTTTTTCTTAATACTATGGATTCTAGACTGTATGTGAGGTGAGGAATGAT-TGTATGATTTGTTGCAGTCTGATAGAGGGCATTTTA]

[+] EMBL CD085652             [CGTGCTGTATTGAGGACAGCTTCTAGTCTAGACCAGTCAGTTTTTCTTAATACTATGGATTCTAGACTGTATGTGAGGTGAGGAATGAT T                                   ]
[+] EMBL CD064249             [                    TTCTAGTCTAGA CAGTCAGTTTTTCTTAATACTATGGATTCTAGACTGTATGTGAGGTGAGG GTGTTGTGTATGATTTGTTGCAGTCTGATAGAGGGCATTTTA]


>consensus_10475#5 CGTGCTGTATTGAGGACAGCTTCTAGTCTAGACCAGTCAGTTTTTCTTAATACTATGGAT TCTAGACTGTATGTGAGGTGAGGAATGATTGTATGATTTGTTGCAGTCTGATAGAGGGCA TTTTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10475#3      ------------------------------------------------------------
consensus_10475#4      ------------------------------------------------------------
consensus_10475#0      CACACCCATGTCAAAATCCAAACTGTAACCGAATGTTTGCTACAATGAAAGAAATGAACA 60
consensus_10475#1      ------------------------------------------------------------
consensus_10475#2      ------------------------------------------------------------
consensus_10475#5      ------------------------------------------------------------
                                                                                   

consensus_10475#3      ------------------------------------------------------------
consensus_10475#4      ------------------------------------------------------------
consensus_10475#0      GACACTACAGAAATGATCACAAGACACACAACACAGACCCCATATCAACAACATCAAACT 120
consensus_10475#1      ---------------------------------------------------CTAACAGTG 9
consensus_10475#2      ------------------------------------------------------------
consensus_10475#5      ------------------------------------------------------------
                                                                                   

consensus_10475#3      ------------------------------------------------------------
consensus_10475#4      ------------------------------------------------------------
consensus_10475#0      TAAAATGCCCTCTATCAGACTGCAACAAATCATACACAACACTCGGATGGCTAAACAGAC 180
consensus_10475#1      AGTCCCTATATAGCTGTCCCCTATCTGACTGTAATAAGATGTATAAGACGTTGGGTTGGT 69
consensus_10475#2      ------------------------------------------------------------
consensus_10475#5      ------------------------------------------------------------
                                                                                   

consensus_10475#3      ------------------------------------------------------------
consensus_10475#4      ------------------------------------------------------------
consensus_10475#0      ATATAAAATCATGTCATCCTCAGTATTCTCAACAACATATTGAACACAACAATAACACAC 240
consensus_10475#1      TAATTAGACACATGCAATCATGCCACCCACAATGTAACCTAGCTAAAGCTGAACCAAAAA 129
consensus_10475#2      ----------TATCAAATCATGTCACCCTCAGTACTCTCAACAACAAACTGAAAACAACA 50
consensus_10475#5      ------------------------------------------------------------
                                                                                   

consensus_10475#3      ------------------------------------------------------------
consensus_10475#4      ------------------------------------------------------------
consensus_10475#0      AGCACAAAACACACACCCTAAAGACAAAAAAACACACAACACTGTCCATTTTCAGGATGC 300
consensus_10475#1      CCAAAGTTAATAAA-ATTGACTCCAAGAAGGATCAAAATAAATGTCCATACCCAGGCTGC 188
consensus_10475#2      ACAACAATAACACACACCCACAAAACAAAGAACACACAACAATGCCCATTTCCAGGTTGC 110
consensus_10475#5      ------------------------------------------------------------
                                                                                   

consensus_10475#3      ------------------------------------------------------------
consensus_10475#4      ------------------------------------------------------------
consensus_10475#0      AACAAAACACTACCAACGGCAAAAGGTATCATCAATCATTGCTATGTAGTACACAGATGG 360
consensus_10475#1      AACAAAACTTTACCGACTAAGAAAGGTATAATTAATCACTGCTATGTAGTACATAGGTGG 248
consensus_10475#2      AACAAAACACTTCCAACGGCAAAAGGTATCATCAATCACTGCTATGTTGTACACAGATGG 170
consensus_10475#5      ------------------------------------------------------------
                                                                                   

consensus_10475#3      ------------------------------------------------------------
consensus_10475#4      ------------------------------------------------------------
consensus_10475#0      TCAGCAATCACTGGACAGGAAGTAAAGCCAAAGAAAAAAATAACTGCGAAAACAGCTATT 420
consensus_10475#1      TCAGCAATCACCGGACAGGAAGTAAAACCAAAGACAAAAATAA-TGCAAAAACAACTATT 307
consensus_10475#2      TCAGCAATCACCGGACAGGAAGTAGAGCCAAAGAAAAAAATAACTGCGAAAACAGCTATT 230
consensus_10475#5      ------------------------------------------------------------
                                                                                   

consensus_10475#3      ------------------------------------------------------------
consensus_10475#4      ------------------------------------------------------------
consensus_10475#0      GAGCCCCGGTAGTTGTGCCTTGCTTCATTGTAGCCTCTACTCCAGAAGGGC-CAATAGGC 479
consensus_10475#1      GCGCCCCGGTAGTTGTGCCGTGCTTCGATGTAGCCTCTTCTCCAGAAGGGCCTACTAGGC 367
consensus_10475#2      GAGCCCCGGTAGTTGTGCCTTGCTTCATTGTAGCCTCTTCTCCAGAAGGGC-TAATAGGC 289
consensus_10475#5      -------------------------------CGTGCTGTATTGAGGACAGC-TTCTAGTC 28
                                                                                   

consensus_10475#3      -----------------------------------------------------AATCCGA 7
consensus_10475#4      ------------------------------------------------------------
consensus_10475#0      TTCACCAACCAGTTTGGCTGGG----AGGGGCACCACAGGGAT-GGGAGGCGAAATCCGA 534
consensus_10475#1      TTCACCAACTAGTTTGGCTGGA----AGGGGCACCACAGGGAT-GGGAGGTAAAATCCGA 422
consensus_10475#2      TTTACCAACCAGTTTGGCTGGA----AGGGGCACCACAGGCATTGGGGAGCGAAATCCGA 345
consensus_10475#5      TAGACCAGTCAGTTTTTCTTAATACTATGGATTCTAGACTGTATGTGAGGTGAGGAATGA 88
                                                                                   

consensus_10475#3      CTCACACGTCCTCGTCGTGCCTCCTGGATCATGGGACTGATTCCATGACCTAACGTG-GG 66
consensus_10475#4      ------AGGATTCTGCGTAAGCAGTGCA--AAAACAACTATCCCATGTACTAATGTG-AG 51
consensus_10475#0      CTCACACGTCCTCGTCGTGCCTCCTGGATCATGGGATTGTTTCCATGAACTAACGTG-AG 593
consensus_10475#1      CTCACACGTCCTCGTCGTGCCTCCTGGATCATGGGACTGATTCCATGAACTAACGTG-AG 481
consensus_10475#2      CTCACACGTCCTCGTCGTGCCTTCTGGATCATGGCACTGTTTCCATGACCTAACGTATAG 405
consensus_10475#5      -TTGTATG-ATTTGT--TGCAGTCTGATAGAGGGCATTTTA------------------- 125
                              *   *     *      **    *    *                        

consensus_10475#3      CGGTTAATCGAGGGTGGTGGAGATCGGACTAATCACCCACTCTACCTATACCCAAAATTC 126
consensus_10475#4      TGGTAA--TGTGGGTGGTAGAGATCGGCCTAATCAACCATTCTACCTATACCCGCAAA-C 108
consensus_10475#0      CGGTTAATCGAGGGTGGTGGAGATCGGACTAATCACCCACTCTACCTATACCCAAAATTC 653
consensus_10475#1      CGGTAA--CCCGGGTGGTGGAGATCGGGCTAATCACCCTCTCTACCTATACCCACCCCTT 539
consensus_10475#2      CTATCT--TCCAA-TAACTCAATTCGGTTTTAGCAA-------AAATCTATCCACAATTC 455
consensus_10475#5      ------------------------------------------------------------
                                                                                   

consensus_10475#3      GATTACGAGTGCTACAAGGAATCATTGCATAGCTATTGAGAGTGCAAAAAGAGAGAGAAA 186
consensus_10475#4      GATTACGAATGCTACAAAGAGTCATTGCGTAACTATTGAGGGTTCAAAAAGATGG----- 163
consensus_10475#0      GATTACGAGTGCTACAAGGAATCATTGCATAGCTATTGAGAGTGCAAAAAGAGAGAGAAA 713
consensus_10475#1      GATTACGAAAGCTACAAAGAAACATTGCACAATTATACCTGGAATAAAAAAAGACAAAAA 599
consensus_10475#2      AA--GCAATAACGACCATGAGACAT---ACAATTCAATCCGC------------------ 492
consensus_10475#5      ------------------------------------------------------------
                                                                                   

consensus_10475#3      ----------------AAATATTTAAAAAGATTGCAAAAATAAAGAGAGAAAAAGAGAGA 230
consensus_10475#4      ----------------TTATATT------------------------------------- 170
consensus_10475#0      CAAAAAGAGAGAGAAAAAATAATAAAAAAGATTGCAAAAATAAAGAGAGAAAAAGAGAGA 773
consensus_10475#1      ---------AAATGCCCAAAATTACCAAAAACTTAAATTTGGTTTATGGATTATCCGGGG 650
consensus_10475#2      ------------------------------------------------------------
consensus_10475#5      ------------------------------------------------------------
                                                                                   

consensus_10475#3      AAGAAAAAA--AAGTCTGCCCAAACAAAAACATAAAGAAAATGACAAAAAAGAATGGGTA 288
consensus_10475#4      -----------GAGTTTGCCCGAAAATAAA--------AAATA--AAAAAAGAATGA--- 206
consensus_10475#0      AAGAAAAAAAAAAGTCTGCCCAAACAAAAACATAAAGAAAATG--ACAAAAAAATGGGTA 831
consensus_10475#1      TTGCTCACAAGAAAGCAAACTCCAAGAGATAGCAGAGCAAATAGCTGAACGCAAGT---- 706
consensus_10475#2      ------------------------------------------------------------
consensus_10475#5      ------------------------------------------------------------
                                                                                   

consensus_10475#3      CGTGTGAGTGTTATGTAATGGTTCCGCGTG-GCA-TGCAGAAACAGCTATCTCACCCCGG 346
consensus_10475#4      -----AAGTTTTATGTAAGGATTCTGCGTAAGCAGTGCAAAAACAACTATCCCGCCCCGG 261
consensus_10475#0      CGTGTGAGTGTTATGTAATGGTTTCGCNGTGGCA-TGCAGAAA----------------- 873
consensus_10475#1      ------------------------------------------------------------
consensus_10475#2      ------------------------------------------------------------
consensus_10475#5      ------------------------------------------------------------
                                                                                   

consensus_10475#3      TAGTTGTGCCGTGCTG- 362
consensus_10475#4      TAGTTGTGCCGTGCTTC 278
consensus_10475#0      -----------------
consensus_10475#1      -----------------
consensus_10475#2      -----------------
consensus_10475#5      -----------------
                                        




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)