These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10485#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 731 fasta sequence [CCCGCGGCCTGCAGTCTTCCCGCGGCCTGCAGTCTTCCCGTTGCCTGCAGTCTTCCCGCTGCCTGGTCTTCCCGGTAGAAAAAAACGCGGTTGTTTCTGAAAGTGGTGTGGATTTTCGTCGTGTCTCCTCAACC-TATTTTTTACAAAGTCATACG-AGGATGAAAGCTGTTTGTGTTATGACTGGTACAGCTGGCGTAAAAGGTGTTGTCAAATTTACTCAAGAAACTGATAACGGACCTGTTCATGTTCACGCCGAATTCAGTGGACTCAAGGCTGGTAAACATGGCTTTCATGTTCATGAATTTGGTGATACAACAAATGGATGTACTTCAGCTGGAGCTCATTTCAATCCAACTAAACAAGAACATGGAGCACCAGAAGATAGTATTCGTCATGTTGGTGACCTGGGAAATGTTGTGGCGGGTGCTGATGGAAACGCAGTTTATAACGCGACTGACAAATTAATATCTTTGAACGGCTCTCATTCAATCATTGGTCGAACTATGGTTATCCATGAAAATGAAGATGATTTAG-GCCGTGGTGGTCATGAGC-TCAGCAAAGTAACTGGTAATGCTGGTGGTCGTTTAGCTTGTGGCGTTATTGGTTTAGCTGCTGAGTAGAGTGGTAGATTTATGTTTTTA-CGTTTTTCATGCCTATTCTCCCTGTGAAACAGTATGATCATTATTGTCAAAAAGGGAAGTTTTGTGTTCCAAATCATTCACAAATAAAGT] [-] EMBL CD180427 [CCCGCGGCCTGCAGTCTTCCCGCGGCCTGCAGTCTTCCCGTTGCCTGCAGTCTTCCCGCTGCCTGGTCTTCCCGGTAGAAAAANACGCGGTTGTTTCTGAAAGTGGTGTGGATTTTCGTCGTGTCTCCTCAACC TATTTTTTACAAAGTCATACG AGGATGAAAGCTGTTTGTGTTATGACTGGTACAGCTGGCGTAAAAGGTGTTGTCAAATTTACTCAAGAAACTGATAACGGACCTGTTCATGTTCACGCCGAATTCAGTGGACTCAAGGCTGGTAAACATGGCTTTCATGTTCATGAATTTGGTGATACAACAAATGGATGTACTTCAGCTGGAGCTCATTTCAATCCAACTAAACAAGAACATGGAGCACCAGAAGATAGTATTCGTCATGTTGGTGACCTGGGAAATGTTGTGGCGGGaag ] [-] EMBL CD163713 [ TCCCGGTAGAAAAAAACGCGGTTGTTTCTGAAAGTGGTGTGGATTTTCGTCGTGTCTCCTCAACC TATTTTTTACAAAGTCATACG AGGATGAAAGCTGTTTGTGTTATGACTGGTACAGCTGGCGTAAAAGGTGTTGTCAAATTTACTCAAGAAACTGATAACGGACCTGTTCATGTTCACGCCGAATTCAGTGGACTCAAGGCTGGTAAACATGGCTTTCATGTTCATGAATTTGGTGATACAACAAATGGATGTACTTCAGCTGGAGCTCATTTCAATCCAACTAAACAAGAACATGGAGCACCAGAAGATAGTATTCGTCATGTTGGTGACCTGGGA ] [+] EMBL CD156492 [ AAACGCGGTTGTTTCTGAAAGTGGTGTGGATTTTCGTCGTGTCTCCTCAACC TATTTTTTACAAAGTCATACG AGGATGAAAGCTGTTTGTGTTATGACCGGTACAGCTGGCGTAAAAGGTGTTGTCAAATTTACTCAAGAAACTGATAACGGACCTGTTCATGTTCACGCCGAATTCAGTGGACTCAAGGCTGGTAAACATGGCTTTCATGTTCATGAATTTGGTGATACAACAAATGGATGTACTTCAGCTGGAGCTCATTTCAATCCAACTAAACAAGAACATGGAGCACCAGAAGATAGTATTCGTCATGTTGGTGACCTGGGAAATGTTGTGGCGGGTGCTGATGGAAACGCAGTTTATAACGCGACTGACAAATTAATATCTTTGAACGGCTCTCATTCAATCATTGGTCGAACTATGGTTATCCATGAAAATGAAGATGATTTAG GCCGTGGTGGTCATGAGC TCAGCAAAGTAACTGGTAATGCTGGTGGTCGTTTAGCTTGTGGTGTTATTGGTTTANCTGCT ] [-] EMBL CD156431 [ AACGCGGTTGTTTCTGAAAGTGGTGTGGATTTTCGTCGTGTCTCCTCAACC TATTTTTTACAAAGTCATACG AGGATGAAAGCTGTTTGTGTTATGACCGGTACAGCTGGCGTAAAAGGTGTTGTCAAATTTACTCAAGAAACTGATAACGGACCTGTTCATGTTCACGCCGAATTCAGTGGACTCAAGGCTGGTAAACATGGCTTTCATGTTCATGAATTTGGTGATACAACAAATGGATGTACTTCAGCTGGAGCTCATTTCAATCCAACTAAACAAGAACATGGAGCACCAGAAGATAGTATTCGTCATGTTGGTGACCTGGGAAATGTTGTGGCGGGTGCTGATGGAAACGCAGTTTATAACGCGACTGACAAATTAATATCTTTGAACGGCTCTCATTCAATCATTGGTCGAACTATGGTTATCCATGAAAATGAAGATGATTTAG GCCGTGGTGGTCATGAGC TCAGCAAAGTAACTGGTAATGCTGGTGGTCGTTTAGCTTGTGGTGTTATTGGTTTAGCTGCTG ] [-] EMBL CD181036 [ GCGGTTGTTTCTGAAAGTGGTGTGGATTTTCGTCGTGTCTCCTCAACC TATTTTTTACAAAGTCATACG AGGATGAAAGCTGTTTGTGTTATGACTGGTACAGCTGGCGTAAAAGGTGTTGTCAAATTTACTCAAGAAACTGATAACGGACCTGTTCATGTTCACGCCGAATTCAGTGGACTCAAGGCTGGTAAACATGGCTTTCATGTTCATGAATTTGGTGATACAACAAATGGATGTACTTCAGCTGGAGCTCATTTCAATCCAACTAAACAAGAACATGGAGCACCAGAAGATAGTATTCGTCATGTTGGTGACCTGGGAAATGTTGTGGCGGGTGCTGATGGAAACGCAGTTTATAACGCGACTGACAAATTAATATCTTTGAACGGCTCTCATTCAATCATTGGTCGAACTATGGTTATCCATGAAAATGAAGATGATTTAG GCCGTGGTGGTCATGAGC TCAGCAAAGTAA ] [+] EMBL CD167603 [ acagaTTCATAAAGTGGTGTGGATTTTCGTCGTGTCTCCTCAACCGTATTTTTTACAAAGTCATACGTAGGATGAAAGCTGTTTGTGTTATGACCGGTACAGCTGGCGTAAAAGGTGTTGTCAAATTTACTCAAGAAACTGATAACGGACCTGTTCATGTTCACGCCGAATTCAGTGGACTCAAGGCTGGTAAACATGGCTTTCATGTTCATGAATTTGGTGATACAACAAATGGATGTACTTCAGCTGGAGCTCATTTCAATCCAACTAAACAAGAACATGGAGCACCAGAAGATAGTATT ] [+] EMBL SMSODCUZN [ GAAAGTGGTGTGGATTTTCGTCGTGTCTCCTCAACC TATTTTTTACAAAGTCATACG AGGATGAAAGCTGTTTGTGTTATGACTGGTACAGCTGGCGTAAAAGGTGTTGTCAAATTTACTCAAGAAACTGATAACGGACCTGTTCATGTTCACGCCGAATTCAGTGGACTCAAGGCTGGTAAACATGGCTTTCATGTTCATGAATTTGGTGATACAACAAATGGATGTACTTCAGCTGGAGCTCATTTCAATCCAACTAAACAAGAACATGGAGCACCAGAAGATAGTATTCGTCATGTTGGTGACCTGGGAAATGTTGTGGCGGGTGCTGATGGAAACGCAGTTTATAACGCGACTGACAAATTAATATCTTTGAACGGCTCTCATTCAATCATTGGTCGAACTATGGTTATCCATGAAAATGAAGATGATTTAG GCCGTGGTGGTCATGAGC TCAGCAAAGTAACTGGTAATGCTGGTGGTCGTTTAGCTTGTGGCGTTATTGGTTTAGCTGCTGAGTAGAGTGGTAGATTTATGTTTTTA CGTTTTTCATGCCTATTCTCCCTGTGAAACAGTATGATCATTATTGTCAAAAAGGGAAGTTTTGTGTTCCAAATCATTCACAAATAAAGT] [+] EMBL SMSODCT [ AAGTCATACG AGGATGAAAGCTGTTTGTGTTATGACTGGTACAGCTGGCGTAAAAGGTGTTGTCAAATTTACTCAAGAAACTGATAACGGACCTGTTCATGTTCACGCCGAATTCAGTGGACTCAAGGCTGGTAAACATGGCTTCCATGTTCATGAATTTGGTGATACAACAAATGGATGTACTTCAGCTGGAGCTCATTTCAATCCAACTAAACAAGAACATGGAGCACCAGAAGATAGTATTCGTCATGTTGGTGACCTGGGAAATGTTGTGGCGGGTGCTGATGGAAACGCAGTTTATAACGCGACTGACAAATTAATATCTTTGAACGGCTCTCATTCAATCATTGGTCGTTCTATGGTTATACATGAAAATGAAGATGATTTAG GCCGTGGTGGTCATGAGC TCAGCAAAGTAACTGGTAATGCTGGTGGTCGTTTAGCTTGTGGCGTTGTTGGTTTAGCTGCTGAGTAGAGTGGTAGATTTATGTTTTTA CGTTTTTCATGCCTATTCTCCCTGTGAAACAGTATGATCATTATTGTCAAAAAGGGAAGTTTTGTGTTCCAAATCATGCACAAATAAAGT] [-] EMBL CD151781 [ TATGACTGGTACAGCTGGCGTAAAAGGTGTTGTCAAATTTACTCAAGAAACTGATAACGGACCTGTTCATGTTCACGCCGAATTCAGTGGACTCAAGGCTGGTAAACATGGCTTTCATGTTCATGAATTTGGTGATACAACAAATGGATGTACTTCAGTTGGAGCTCATTTCAATCCAACTAAACAAGAACATGGAGCACCAGAAGATAGTATTCGTCATGTTGGTGACCTGGGAAATGTTGTGGCGGGTGCTGATGGAAACGCAGTTTATAACGCGACTGTCAAATTAATATCTTTGAACGGCTCTCATTCAATCATTGGTCGAACTATGGTTATCCATGAAAATGAAGATGATTTAGCGCCGTGGTGGTCATGAGCTTCAGCAAAGTACCTGGTAATGATGGTGGTCGTCTAGCTTGTGGCGTTGTTGGTTTAGCTGATGAGTAGAGTGGTAGATTTATGTTTTTAGCGTTTTTCATcgc ] [+] EMBL CD181084 [ AACTGATAACGGACCTGTTCATGTTCACGCCGAATTCAGTGGACTCAAGGCTGGTAAACATGGCTTTCATGTTCATGAATTTGGTGATACAACAAATGGATGTACTTCAGCTGGAGCTCATTTCAATCCAACTAAACAAGAACATGGAGCACCAGAAGATAGTATTCGTCATGTTGGTGACCTGGGAAATGTTGTGGCGGGTGCTGATGGAAACGCAGTTTATAACGCGACTGACAAATTAATATCTTTGAACGGCTCTCATTCAATCATTGGTCGAACTATGGTTATCCATGGAAATGAAGATGATTTAG GCCGTGGTGGTCATGAGC TCAGCAAAGTA ] [+] EMBL CD135146 [ TTCAGTGGACTCAAGGCTGGTAAACATGGCTTTCATGTTCATGAATTTGGTGATACAACAAATGGATGTACTTCAGCTGGAGCTCATTTCAATCCAACTAAACAAGAACATGGAGCACCAGAAGATAGTATTCGTCATGTTGGTGACCTGGGAAATGTTGTGGCGGGTGCTGATGGAAACGCAGTTTATAACGCGACTGACAAATTAATATCTTTGAACGGCTCTCATTCAATCATTGGTCGAACTATGGTTATCCATGAAAATGAAGATGATTTAG GCCGTGGTGGTCATGAGC TCAGCAAAGTAACTGGTAATGCTGGTGGTCGTTTAGCTTGTGGCGTTGTTGGTTTAGCTGCTGAGTAGAGTG ] [-] EMBL CD200331 [ ATGTCCATGAATTTGGTGATACAACAAATGGATGTACTTCAGCTGGAGCTCATTTCAATCCAACTGAACAAGAACATGGAGCACCAGAAGATAGTATTCGTCATGTTGGTGACCTGGGAAATGTTGTGGCGGGTGCTGATGGAAACGCAGTTTATAACGCGACTGACAAATTAATATCTTTGAACGGCTCTCATTCAATCATTGGTCGAACTATGGTTATCCATGAAAATGAAGATGATTTAG GCCGTGGTGGTCATGAGC TCAGCAAAGTAACTGGTAATGCTGGTGGTCGTTTAGCTTGTGGCGTTGTT ] [+] EMBL CD135170 [ AATTTGGTGATACAACAAATGGATGTACTTCAGCTGGAGCTCATTTCAATCCAACTAAACAAGAACATGGAGCACCAGAAGATAGTATTCGTCATGTTGGTGACCTGGGAAATGTTGTGGCGGGTGCTGATGGAAACGCAGTTTATAACGCGACTGACAAATTAATATCTTTGAACGGCTCTCATTNCATCATTGGTCGAACTATGGTTATCCATGAAAATGA ] [+] EMBL CD199545 [ AGATAGTATTCGTCATGTTGGTGACCTGGGAAATGTTGTGGCGGGTGCTGATGGAAACGCAGTTTATAACGCGACTGACAAATTAATATCTTTGAACGGCTCTCATTCAATCATTGGTCGAACTATGGTTATCCATGAAAATGAAGATGATTTAG GCCGTGGTGGTCATGAGC TCAGCAAAGTAACTGGTAATGCTGGTGGTCGTTTAGCTTGTGGCGTTATTGGTTTAGCTGCTGAGTAGAGTGGTAGATTTATGTTTTTA CGTTTTTCATG ] [-] EMBL CD180664 [ TCGTCATGTTGGTGACCTGGGAAATGTTGTGGCGGGTGCTGATGGAAACGCAGTTTATAACGCGACTGTCAAATTAATATCTTTGAACGGCTCTCATTAAATCATTGGTCGAACTATGGTTATCCATGAAAATGAAGATGATTTAG CCCGTGGTGGTCATGAGC TCAGCAAAGTAACTGGTAATGCTGGTG ] [-] EMBL CD162774 [ TCGTCATGTTGGTGACCTGGGTAATGTTGTGGCGGGTGCTGATGGAAACGCAGTTTATAACGCGACTGACAAATTAATATCTTTGAACGGCTCTCATTCAATCATTGGTCGAACTATGGTTATCCATGAAAATGAAGATGATTTAG GCCGTGGTGGTCATGAGC TCAGCAAAGTAA ] consensusID : consensus_10485#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 387 fasta sequence [GCTGGTAAACATGGCTTTCATGTTCATGAATTTGGTGATACAACAAATGGATGTACTTCAGCTGGAGCTCATTTCAATCCAACTAAACAAGAACATGGAGCACCAGAAGATAGTATTCGTCATGTTGGTGACCTGGGAAATGTTGTGGCGGGTGCTGATGGAAACGCAGTTTATAACGCGACTGACAAATTAATATCTTTGAACGGCTCTCATTCAATCATTGGTCGAACTATGGTTGTAAGTATTGATAATCACTGTCGTAGTTATTGTATACTATTGGTTTTAATTCAAAATTCCGTCAACATTGATGTGTTTGAAGCGATTACGATTTCCCTAGTCTGAGAATGGAACAAAGACTCTATGACCAAACACCAAGAAGCTAGCTAA] [+] EMBL CD200514 [GCTGGTAAACATGGCTTTCATGTTCATGAATTTGGTGATACAACAAATGGATGTACTTCAGCTGGAGCTCATTTCAATCCAACTAAACAAGAACATGGAGCACCAGAAGATAGTATTCGTCATGTTGGTGACCTGGGAAATGTTGTGGCGGGTGCTGATGGAAACGCAGTTTATAACGCGACTGACAAATTAATATCTTTGAACGGCTCTCATTCAATCATTGGTCGAACTATGGTTGTAAGTATTGATAATCACTGTCGTAGTTATTGTATACTATTGGTTTTAATTCAAAATTCCGTCAACATTGATGTGTTTGAAGCGATTACGATTTCCCTAGTCTGAGAATGGAACAAAGACTCTATGACCAAACACCAAGAAGCTAGCTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10485#0 CCCGCGGCCTGCAGTCTTCCCGCGGCCTGCAGTCTTCCCGTTGCCTGCAGTCTTCCCGCT 60 consensus_10485#1 ------------------------------------------------------------ consensus_10485#0 GCCTGGTCTTCCCGGTAGAAAAAAACGCGGTTGTTTCTGAAAGTGGTGTGGATTTTCGTC 120 consensus_10485#1 ------------------------------------------------------------ consensus_10485#0 GTGTCTCCTCAACCTATTTTTTACAAAGTCATACGAGGATGAAAGCTGTTTGTGTTATGA 180 consensus_10485#1 ------------------------------------------------------------ consensus_10485#0 CTGGTACAGCTGGCGTAAAAGGTGTTGTCAAATTTACTCAAGAAACTGATAACGGACCTG 240 consensus_10485#1 ------------------------------------------------------------ consensus_10485#0 TTCATGTTCACGCCGAATTCAGTGGACTCAAGGCTGGTAAACATGGCTTTCATGTTCATG 300 consensus_10485#1 --------------------------------GCTGGTAAACATGGCTTTCATGTTCATG 28 **************************** consensus_10485#0 AATTTGGTGATACAACAAATGGATGTACTTCAGCTGGAGCTCATTTCAATCCAACTAAAC 360 consensus_10485#1 AATTTGGTGATACAACAAATGGATGTACTTCAGCTGGAGCTCATTTCAATCCAACTAAAC 88 ************************************************************ consensus_10485#0 AAGAACATGGAGCACCAGAAGATAGTATTCGTCATGTTGGTGACCTGGGAAATGTTGTGG 420 consensus_10485#1 AAGAACATGGAGCACCAGAAGATAGTATTCGTCATGTTGGTGACCTGGGAAATGTTGTGG 148 ************************************************************ consensus_10485#0 CGGGTGCTGATGGAAACGCAGTTTATAACGCGACTGACAAATTAATATCTTTGAACGGCT 480 consensus_10485#1 CGGGTGCTGATGGAAACGCAGTTTATAACGCGACTGACAAATTAATATCTTTGAACGGCT 208 ************************************************************ consensus_10485#0 CTCATTCAATCATTGGTCGAACTATGGTTATCCATGAAAATGAAGATGATTTAGGCCGTG 540 consensus_10485#1 CTCATTCAATCATTGGTCGAACTATGGTTGT------AAGTATTGATAATCACTGTCGTA 262 ***************************** * ** * *** ** * *** consensus_10485#0 GTGGTCATGAGCTCAGCAAAGTAACTGGTAATGCTGGTGG--TCGTTTAGCTTGTGGCGT 598 consensus_10485#1 GTTATTGTATACTATTGGTTTTAATTCAAAATTCCGTCAACATTGATGTGTTTGAAGCGA 322 ** * * ** *** * *** * * * * * * *** *** consensus_10485#0 TATTGGTTTAGCTGCTGAGTAGAGTGGTAGATTTATGTTTTTACGTTTTTCATGCCTATT 658 consensus_10485#1 TTACGATTTCCCTAGTCTG-AGAATGGAACA---AAGACTCTATGACCAA-ACACCAAGA 377 * * *** ** * * *** *** * * * * * ** * * ** * consensus_10485#0 CTCCCTGTGAAACAGTATGATCATTATTGTCAAAAAGGGAAGTTTTGTGTTCCAAATCAT 718 consensus_10485#1 AGCTAGCTAA-------------------------------------------------- 387 * * * consensus_10485#0 TCACAAATAAAGT 731 consensus_10485#1 ------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||