These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10490#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1330 fasta sequence [GTATCTGTCTGCATTCAGTGCGAAAAATATAAGTGGAAAGTGGCTTAGTTCCCTGACTGCTGATGTGTTAGACAAGTATGGGGTTCAAAAGATTGGTCATCAGATAATCATATTGGAGAAAGTCAAGCAATTACAATACCAGTTTTCATCTTTTGATAACGAAACGCTTCAGTCAGTTTTACTACGCGTCTCACGTTCGTGCACATGTATTATCACTGCAATAAATTCTCTTATGGCTATAACTAAGAGACAAGATGCTGATAGTCCTTATCCAGGGATACTTTCAGATATTCAGGGAGCTGCTTCTTACATTCTCAGCTGTATACTGAACCTAATGTCTACAATTGCAAATGCTGCGTCCTGGCTAGAACGGGGTTTAATTTTCGGTCCACGATAAACAATATCCACGTAATTGTTTCTGTTCAGGATGAATCCCCAGCATTTAGTACTGGAAAAGTTACCAAAGGAGATGAAGTGATTGAAGTAAATGAACAAATAGTTGTAAATTGGTTGGCTTCACTATCGCGTCGCTGATTTAATGCGGCATTCTTCACAGCACATTAGTTTGAGATTGCGAAAGCGGCCCTCTCATTCCAACGATTTTATTGGTTTTCCTGGGGCCGGGCGGCGTCATCGCCTAATAGTCAACCAGATACCACCTGCTGGGAGCCTATCTCAGACGCGAGGTGCGTATATATTTACAAGAAATCCAAAACGTCGTCTGCCTCTTACTGGTCCACTTTCTGCAGAACCTTTGGCTGTTACTCAAGAAACCACCTCTGATCAAACATCTGTTTCCTCACCTACATCAACATCTCCACCTGAATCCCAATCAATAGTTAGTGTATCTGGGTTGCTATCCTCTTCTCCGACATCTTCCTTATCTGTGCATCAGGGTACATCAATAAAAGTGAATGATGATCCTTTCAATCTAGAAAATCGTGCTCATATATCTTTTAGATCGAATTCCAGCAATGAATCCATAATTTACAGTAATTCGAGGCTTATTGCTAGTACACCAAATACTCCATTAATGACTTTACGATCAATGGACTCGGTGTGTTCTCATTCTTCATTATCGTTTCCATCTCATCTTCCACCTGCACATCCTGGTACTGCAACGTTTGAC-AGCGGAATAAACGATACGAGTGTGATCTCATCTAATATAACCTACTCAAAAAAATACAAGTCTGTCAATACTTCTCATCATATTCGCTCAACTTCTTGTTCTTCAAACAAATCTATTTTTCCTCGTTTTTCCCTAACACATCGACGTACAGCTTCTGGTGACCCAAAACTGATGAATAGTATATCTAATGGCAACGGGGAA] [-] EMBL CD154680 [GTATCTGTCTGCATTCAGTGCGAAAAATATAAGTGGAAAGTGGCTTAGTTCCCTGACTGCTGATGTGTTAGACAAGTATGGGGTTCAAAAGATTGGTCATCAGATAATCATATTGGAGAAAGTCAAGCAATTACAATACCAGTTTTCATCTTTTGATAACGAAACGCTTCAGTCAGTTTTACTACGCGTCTCACGTTCGTGCACATGTATTATCACTGCAATAAATTCTCTTATGGCTATAACTAAGAGACAAGATGCTGATAGTCCTTATCCAGGGATACTTTCAGATATTCAGGGAGCTGCTTCTTACATTCTCAGCTGTATA ] [+] EMBL CD116648 [ TCACTGCAATAAATTCTCTTATGGCTATAACTAAGAGACAAGATGCTGATAGTCCTTATCCAGGGATACTTTCAGATATTCAGGGAGCTGCTTCTTACATTCTCAGCTGTATACTGAACCTAATGTCTACAATTGCAAATGCTGCGTCCTGGCTAGAACGGGGTTTAATTTTCGGTCCACGATAAACAATATCCACGTAATTGTTTCTGTTCAGGATGAATCCCCAGCATTTAGTACTGGAAAAGTTACCAAAGGAGATGAAGTGATTGAAGTAAATGAACAAATAGTTGTAAATTGGTTGGCTTCACTATCGCGTCGCTGATTTAATGCGGCATTCTTCACAGCACATTAGTTTGAGATTGCGAAAGCGGCCCTCTCATTCCAACGATTTTATTGGTTTTCCTGGGGCCGGGCGGCGTCATCGCCTAATAGTCAACCAGATACCACCTGCTGGGAGCCTATCTCAGACGCGAGGTGCGTATATATTTACAAGAAATCCAAAACGTCGTCTGCCTCTTACTGGTCCACTTTCTGCAGAACCTTTGGCTGTTACTCAAGAAACCACCTCTGATCAAACATCTGTTTCCTCACCTACAT ] [+] EMBL CD117140 [ TCACTGCAATAAATTCTCTTATGGCTATAACTAAGAGACAAGATGCTGATAGTCCTTATCCAGGGATACTTTCAGATATTCAGGGAGCTGCTTCTTACATTCTCAGCTGTATACTGAACCTAATGTCTACAATTGCAAATGCTGCGTCCTGGCTAGAACGGGGTCTAATTTTCGGTCCACGATAAACAATATCCACGTAATTGTTTCTGTTCAGGATGAATCCCCAGCATTTAGTACTGGAAAAGTTACCAAAGGAGATGAAGTGATTGAAGTAAATGAACAAATAGTTGTAAATTGGTTGGCTTCACTATCGCGTCGCTGATTTAATGCGGCATTCTTCACAGCACATTAGTTTGAGATTGCGAAAGCGACCCTCTCATTCCAACGATTTTATTGGTTTTCCTGGGGCCGGGCGGCGTCATCGCCTAATAGTCAACCAGATACCACCTGCTGGGAGCCTATCTCAGACGCGAGGTGCGTATATATTTACAAGAAATCCAAAACGTCGTCTGCCTCTTACTGGTCCACTTTCTGCAGAACCTTTGGCTGTT ] [+] EMBL CD200695 [ CGGCGTCATCGCCTAATAGTCAACCAGATACCACCTGCTGGGAGCCTATCTCAGACGCGAGGTGCGTATATATTTACAAGAAATCCAAAACGTCGTCTGCCTCTTACTGGTCCACTTTCTGCAGAACCTTTGGCTGTTACTCAAGAAACCACCTCTGATCAAACATCTGTTTCCTCACCTACATCAACATCTCCACCTGAATCCCAATCAATAGTTAGTGTATCTGGGTTGCTATCCTCTTCTCCGACATCTTCCTTATCTGTGCATCAGGGTACATCAATAAAAGTGAATGATGATCCTTTCAATCTAGAAAATCGTGCTCATATATCTTTTAGATCGAATTCCAGCAATGAATCCATAATTTACAGTAATTCGAGGCTTATTGCTAGTACACCAAATACTCCATTAATGACTTTACGATCAATGGACTCGGTGTGTTCTCATTCTTCATTATCGTTTCCATCTCATCTT ] [+] EMBL CD200955 [ CGGCGTCATCGCCTAATAGTCAACCAGATACCACCTGCTGGGAGCCTATCTCAAACGCGAGGTGCGTATATATTTACATGAAATCCAAAACGTCGTCTGCCTCTTACTGGTCCACTTTCTGCAGAACCTTTGGCTGTTACTCAAGAAACCACCTCTGATCAAACATCTGTTTCCTCACCTACATCAACATCTCCACCTGAATCCCAATCAATAGTTAGTGTATCTGGGTTGCTATCCTCTTCTCCGACATCTTCCTTATCTGTGCATCAGGGTACATCAATAAAAGTGAATGATGATCCCTTCAATCTAGAAAATCGTGCTCATATATCTTTTAGATCGAATTCCAG ] [+] EMBL CD149368 [ TGCGTATATATTTACAAGAAATCCAAAACGTCGTCTGCCTCTTACTGGTCCACTTTCTGCAGAACCTTTGGCTGTTACTCAAGAAACCACCTTTGATCAAACATCTGTTTCCTCACCTACATCAACATCTCCACCTGAATCCCAATCAATAGTTAGTGTATCTGGGTTGCTATa ] [+] EMBL CD149312 [ CGTATATATTTACAATAAATCCAAAACGTCGTCTGCCTCTTACTGGTCCACTTTCTGCAGAACCTTTGGCTGTTACTCAAGAAACCACCTCTGATCAAACATCTGTTTTCTCACCTACATCAACATCTCCACCTGAATCCCAATCAATAGTTACTGCATCTGGGTTGCTATCCTCT ] [+] EMBL CD149257 [ CGTATATATTTACAAGAAATCCAAAACGTCGTCTGCCTCTTACTGGTCCACTTTCTGCAGAACCTTTGGCTGTTACTCACGAAACCACCTGTGATCAAACATCTGTTTGCTCACCTACATCGACATCTCCACCTGAATCCCAATCAATAGTTAGAGTATCTGGGTTGCTATCCTC ] [+] EMBL CD199654 [ CTGCAGAACCTTTGGCTGTTACTCAAGAAACCACCTCTGATCAAACATCTGTTTCCTCACCTACATCAACATCTCCACCTGAATCCCAATCAATAGTTAGTGTATCTGGGTTGCTATCCTCTTCTCCGACATCTTCCTTATCTGTGCATCAGGGTACATCAATAAAAGTGAATGATGATCCTTTCAATCTAGAAAATCGTGCTCATATATCTTTTAGATCGAATTCCAGCAATGAAT ] [+] EMBL CD182003 [ TAGTTAGTGTATCTGGGTTGCTATCCTCTTCTCCGACATCTTCCTTATCTGTGCATCAGGGTACATCAATAAAACTGAATGATGATCCTTTCAATCTAGAAAATCGTGCTCATATATCTTTTAGATCGAATTCCAGCAATGAATCCATAATTTACAGTGATTCGAGGCTTATTGCTAGTACACCAAATACTCCATTAATGACTTTACGATCAATGGACTCGGNGTGTTCTCATTCTTCATTATCGTTTCCATCTCATCTT ] [-] EMBL CD093331 [ AGTTAGTGTATNTGGGGTGNGAATCTCTTCTCCGACATCTTCCTTATCTGTGCATCAGGGTACATCAATAAAAGTGAATGATGATCCTTTCAATCTAGAAAATCGTGCTCATATATCTTTTAGATCGAATTCCAGCAATGAATCCATAATTTACAGTAATTCGAGGCTTATTGCTAGTACACCAAATACTCCATTAATGACTTTACGATCAATGGACTCGGTGTGTTCTCATTCTTCATTATCGTTTCCATCTCATCTTC ] [-] EMBL CD093261 [ AGTTAGTGTATCTGGGTTGCTATCCTCTTCTCCGACATCTTCCTTATCTGTGCATCAGGGTACATCAATAAAAGTGAATGATGATCCTTTCAATCTAGAAAATCGTGCTCATATATCTTTTAGATCGAATTCCAGCAATGAATCCATAATTTTCAGTAATTCGAGGCTTATTGCTAGTACACCAAATACTCCATTAATGACTTTACGATCAATGGACTCGGTGTGTTCTCATTCTTCATTATCGTTTCCATCTCATCTTC ] [-] EMBL CD093171 [ AGTTAGTGTATCTGGGTTGCTATCCTCTTCTCCGACATCTTCCTTATCTGTGCATCAGGGTACATCAATAAAAGTGAATGATGATCCTTTCAATCTAGAAAATCGTGCTCATATATCTTTTAGATCGAATTCCAGCAATGAATCCATAATTTACAGTAATTCGAGGCTTATTGCTAGTACACCAAATACTCCATTAATGACTTTACGATCAATGGACTCGGTGTGTTCTCATTCTTCATTATCGTTTCCATCTCGTCTTC ] [-] EMBL CD149580 [ GTGCTCATATATCTTTTAGATCGAATTCCAGCAATGAATCCATAATTTACAGTAATTCGAGGCTTATTGCTAGTACACCAAATACTCCATTAATGACTTTACGATCAATGGACTCGGTGTGTTCTCATTCTTCATTATCGTTTCCATCTCATCTTCCACCTGCACATCCTGGTACTGCAACGTTTGAC AGCGGAATAAACGATACGAGTGTGATCTCATCTAATATAACCTACTCAAAAAAATACAAGTCTGTCAATACTTCTCATCATATTCGCTCAACTTCTTGTTCTTCAAACAAATCTATTTTTCCTCGTTTTTCCCTAACACATCGACGTACAGCTTCTGGTGACCCAAAACTGATGAATAGTATATCTAATGGCAACGGGGAA] [-] EMBL CD149469 [ CATCCTGGTACTGCAACGTTTGACTAACAGAATAAACGATACGAGTGTGATCTCATCTAATATAACATACTCAAAAAAATACAAGTCTGTCAATACTTCTCATCATATTCGCTCAACTTCTTGTTCTTCAAACAAATCTATTTTTCCTCGTTTTTCCATAACACATCGACGTACAGCTTCTGGTGACCCAAAACTGATGAATAGTATATCCAATGGCATCGGGGAA] [-] EMBL CD149615 [ AGTCTGTCAATACTTCTCATCATATTCGCTCAACTTCTTGTTCTTCAAACAAATCTATTTTTCCTCGTTTTTCCCTAACACATCGACGTACAGCTTCTGGTGACCCAAAACTGATGAATAGTATATCTAATGGCAACGGGGAA] consensusID : consensus_10490#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 326 fasta sequence [CGTGCTCATATATCTTTTAGATCGAATTCCAGCAATGAATCCATAATTTACAGTAATTCGAGGCTTATTGCTAGTACACCAAATACTCCATTAATGACTTTACGATCAATGGACTCGGTGTGTTCTCATTCTTCATTATCGTTTCCATCTCATCTTCCACCTGCACATCCTGGTACTGCAACGTTTGACAACGGAATAAACGATACGAGTGTGATCTCATCTAATATAACATACTCAAAATACGTCATCTCAGAAAAAACTTAGTCCTTCTTCTTCGCTTCGTCACTGTAGTAGCTCATCTCCTAAGTTTCATGCTCTGGACAAAC] [+] EMBL CD178526 [CGTGCTCATATATCTTTTAGATCGAATTCCAGCAATGAATCCATAATTTACAGTAATTCGAGGCTTATTGCTAGTACACCAAATACTCCATTAATGACTTTACGATCAATGGACTCGGTGTGTTCTCATTCTTCATTATCGTTTCCATCTCATCTTCCACCTGCACATCCTGGTACTGCAACGTTTGACAACGGAATAAACGATACGAGTGTGATCTCATCTAATATAACATACTCAAAATACGTCATCTCAGAAAAAACTTAGTCCTTCTTCTTCGCTTCGTCACTGTAGTAGCTCATCTCCTAAGTTTCATGCTCTGGACAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10490#0 GTATCTGTCTGCATTCAGTGCGAAAAATATAAGTGGAAAGTGGCTTAGTTCCCTGACTGC 60 consensus_10490#1 ------------------------------------------------------------ consensus_10490#0 TGATGTGTTAGACAAGTATGGGGTTCAAAAGATTGGTCATCAGATAATCATATTGGAGAA 120 consensus_10490#1 ------------------------------------------------------------ consensus_10490#0 AGTCAAGCAATTACAATACCAGTTTTCATCTTTTGATAACGAAACGCTTCAGTCAGTTTT 180 consensus_10490#1 ------------------------------------------------------------ consensus_10490#0 ACTACGCGTCTCACGTTCGTGCACATGTATTATCACTGCAATAAATTCTCTTATGGCTAT 240 consensus_10490#1 ------------------------------------------------------------ consensus_10490#0 AACTAAGAGACAAGATGCTGATAGTCCTTATCCAGGGATACTTTCAGATATTCAGGGAGC 300 consensus_10490#1 ------------------------------------------------------------ consensus_10490#0 TGCTTCTTACATTCTCAGCTGTATACTGAACCTAATGTCTACAATTGCAAATGCTGCGTC 360 consensus_10490#1 ------------------------------------------------------------ consensus_10490#0 CTGGCTAGAACGGGGTTTAATTTTCGGTCCACGATAAACAATATCCACGTAATTGTTTCT 420 consensus_10490#1 ------------------------------------------------------------ consensus_10490#0 GTTCAGGATGAATCCCCAGCATTTAGTACTGGAAAAGTTACCAAAGGAGATGAAGTGATT 480 consensus_10490#1 ------------------------------------------------------------ consensus_10490#0 GAAGTAAATGAACAAATAGTTGTAAATTGGTTGGCTTCACTATCGCGTCGCTGATTTAAT 540 consensus_10490#1 ------------------------------------------------------------ consensus_10490#0 GCGGCATTCTTCACAGCACATTAGTTTGAGATTGCGAAAGCGGCCCTCTCATTCCAACGA 600 consensus_10490#1 ------------------------------------------------------------ consensus_10490#0 TTTTATTGGTTTTCCTGGGGCCGGGCGGCGTCATCGCCTAATAGTCAACCAGATACCACC 660 consensus_10490#1 ------------------------------------------------------------ consensus_10490#0 TGCTGGGAGCCTATCTCAGACGCGAGGTGCGTATATATTTACAAGAAATCCAAAACGTCG 720 consensus_10490#1 ------------------------------------------------------------ consensus_10490#0 TCTGCCTCTTACTGGTCCACTTTCTGCAGAACCTTTGGCTGTTACTCAAGAAACCACCTC 780 consensus_10490#1 ------------------------------------------------------------ consensus_10490#0 TGATCAAACATCTGTTTCCTCACCTACATCAACATCTCCACCTGAATCCCAATCAATAGT 840 consensus_10490#1 ------------------------------------------------------------ consensus_10490#0 TAGTGTATCTGGGTTGCTATCCTCTTCTCCGACATCTTCCTTATCTGTGCATCAGGGTAC 900 consensus_10490#1 ------------------------------------------------------------ consensus_10490#0 ATCAATAAAAGTGAATGATGATCCTTTCAATCTAGAAAATCGTGCTCATATATCTTTTAG 960 consensus_10490#1 ----------------------------------------CGTGCTCATATATCTTTTAG 20 ******************** consensus_10490#0 ATCGAATTCCAGCAATGAATCCATAATTTACAGTAATTCGAGGCTTATTGCTAGTACACC 1020 consensus_10490#1 ATCGAATTCCAGCAATGAATCCATAATTTACAGTAATTCGAGGCTTATTGCTAGTACACC 80 ************************************************************ consensus_10490#0 AAATACTCCATTAATGACTTTACGATCAATGGACTCGGTGTGTTCTCATTCTTCATTATC 1080 consensus_10490#1 AAATACTCCATTAATGACTTTACGATCAATGGACTCGGTGTGTTCTCATTCTTCATTATC 140 ************************************************************ consensus_10490#0 GTTTCCATCTCATCTTCCACCTGCACATCCTGGTACTGCAACGTTTGACAGCGGAATAAA 1140 consensus_10490#1 GTTTCCATCTCATCTTCCACCTGCACATCCTGGTACTGCAACGTTTGACAACGGAATAAA 200 ************************************************** ********* consensus_10490#0 CGATACGAGTGTGATCTCATCTAATATAACCTACTCAAAAAAATACAAGTCTGTCAATAC 1200 consensus_10490#1 CGATACGAGTGTGATCTCATCTAATATAACATACTCAAAATACGTCATCTCAGAAAAAAC 260 ****************************** ********* * ** ** * ** ** consensus_10490#0 TTCTCATCATATTCGCTCAACTTCTTGTTCTTCAAACAAATCTATTTTTCCTCGTTTTTC 1260 consensus_10490#1 TT--AGTCCTTCTTCTTCGCTTCGTCACTGTAGTAGCTCATCTCCTAAGTTTCATGCT-- 316 ** ** * * ** * * * * * * **** * ** * * consensus_10490#0 CCTAACACATCGACGTACAGCTTCTGGTGACCCAAAACTGATGAATAGTATATCTAATGG 1320 consensus_10490#1 CTGGACAAAC-------------------------------------------------- 326 * *** * consensus_10490#0 CAACGGGGAA 1330 consensus_10490#1 ---------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||