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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10529#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1374 fasta sequence
[AGCTTGCTGNTCTCTGACTCAAAGGATAAGTCGATTTGCTACTCGCTAAGATGGTGGATGGAGATATTACGCCTGAGGATAAGGCAGATATATGTGCTATATTGGTTTTGCTTGCACCACCCTGTGAATTTAATGAAGTATTAGATGATATCCGTTGTTTCGCTGGTGATGATCATCAAATTCAAGAGAAGCTAGCAGCATCAGTAGCGCAGTATAACAAGGACCAAATGATTCATGTGAAGTTACCAAATTGCGAGTATCCGACTCTGATTACTGCATACGCAGACTTGGGAAATGGATATTTTATGTGTCCTAGGTCGCAGTTGACATTTCACTTCGACCATCTCAAGCAGACAGTCAGTGATGTTAAAAGTTTTGACAAGAGTAGCTTTGATAATATAGACTGTGATCTGGAGAGTTGGAGGCGTGCATTAGAAGATAGCGCTACTGTCTATGTAAACGAACATTTCCCTGATGGAGCTGTTGAAGTTTACGCCCTGAGGTCGAATGATGGTGCACGCTCTCTCGTTATGTGCATTGAATCTCACTTCAGTAAACATCAATCAACTGGACGATGGCGATCCGAATGGACCTTCAAGCTAGTTGGACAAAAATCGATGGAGTTTTCGATTCATGGTGTTATTAAGGTTCAGACACATTTATACGAAGAGGGGAATGTTCAATTGATTTCATCCAAAGAAGTTGATTTCATTGTCTCTGAATCTCTCCCTAGAATATTTGCCAGGGAATCAATAAAGAGAATAAAAGAAGCTGACTGTGCATATCAAATTGCCATTGGCGAGAACTTCAAAACAATGTCCGACACAACTTTCAAAGCTCTTCGGCGACAATTGCCTTTAACTCGTTCCAAACTGGATTGGAATAAAATCATCACTTATCAGATAGGTAGCGAACTATCTAGAG-CACCACCAAATTAAAATTATCAGTTGAAGTTAATTTTCTTTTCATTACACACACACACGCACTACTCCTTTTGGCCGATAAGGTAAAATTGGAGACGATTTAATATATTTTGATTTTTGGTGTACAATAAAAATCAAGGAAATTACGAATATTTTGCCTACTCTCTAATGAATTTAATATTATTGAAATATATATATGTTCCTTTTATGAATAGTTTACTAAAAATAAACTTTACCACTATAATGATCAGGAATTGTTTTCAGTTTTGATTTTTTTGCAACTCGATGATTTATCCAAGTCGTCATGTGTATTTTTTTGTTTTCCTCTTTCGTTACT-TTTGATACATCTGTATTTAAAAAAAAGAAAACATCTCTAATTGTGTATGGTAGATGGTACATTTCACCATTAATTTTATTTGTGTTGATTCGATATATACGTTATAATTAATTA]
[+] EMBL CD197973 [AGCTTGCTGNTCTCTGACTCAAAGGATAAGTCGATTTGCTACTCGCTAAGATGGTGGATGGAGATATTACGCCTGAGGATAAGGCAGATATATGTGCTATATTGGTTTTGCTTGCACCACCCTGTGAATTTAATGAAGTATTAGATGATATCCGTTGTTTCGCTGGTGATGATCATCAAAT ]
[+] EMBL AI975090 [ ACTCGCTAAGATGGTGGATGGAGATATTACGCCTGAGGATAAGGCAGATATATGTGCTAGATTGGTTTTGCTTGCACCACCCTGTGAATTTAATGAAGTATTAGATGATATCCGTTGTTTCGCTGGTGATGATCATCAGATTCAAGAGAAGCTAGCAGCATCAGTAGCGCAGTATAACAAGGACCAAATGATTCATGTGAAGTTACCAAATTGCGAGTATCCGACTCTGATTACTGCATACGCAGACTTGGGAAATGGATATTTTATGTGTCCTAGGTCGCAGTTGACATTTCACTTCGACCATCTCAAGCAGACAGTCAGTGATGTTAAAAGTTTTGACAAGAGTAGCTTTGATAATATAGACTGTGATCTGGAGAGTTGGAGGCGTGCATTAGAAGATAGCGCTACTGTCTATGTAAACGAACATTTCCCTGATGGAGCTGTTGAAGTTTACGCCCTGAGGTCGAATGATGGTGCACGCTCTCTCGTTATGTGCATTGAATCTCACTTCAGTAAACATCAATCAACTGGACGATGGCGATCCGAAT ]
[+] EMBL CD078763 [ CGAGTATCCGACTCTGATTACTGCATACGCAGACTTGGGAAATGGATATTTTATGTGTCCTAGGTCGCAGTTGACATTTCACTTCGACCATCTCAAGCAGACAGTCAGTGATGTTAAAAGTTTTGACAAGAGTAGCTTTGATAATATAGACTGTGATCTGGAGAGTTGGAGGCGTGCATTAGAAGATAGCGCTACTGTCTATGTAAACGAACATTTCCCTGATGGAGCTGTTGAAGTTTACGCCCTGAGGTCGAATGATGGTGCACGCTCTCTCGTTATGTGCATTGAATCTCACTTCAGTAAACATCAATCAACTGGACGATGGCGATCCGAATGGACCTTCAAGCTAGTTGGACAAAAATCGATGGAGTTTTCGATTCATGGTGTTATTAAGGTTCAGACACATTTATACGAAGAGGGGAATGTTCAATTGATTTCATCCAAAGAAGTTGATTTCATTGTCTCTGAATCTCTCCCTAGAATATTTGCCAGGGAATCAATANAGAGAATAAAAGAAGCTGACTGTGCATATCANATTGCCATTGGCGAGAACTTCAAAACAATGTCCGACACAACTTTCAAAGCTCTTCGGCG ]
[+] EMBL CD183550 [ TATTTTATGTGTCCTAGGTCGCAGTTGACATTTCACTTCGACCATCTCAAGCAGACAGTCAGTGATGTTAAAAGTTTTGACAAGAGTAGCTTTGATAATATAAACTGTGATCTGGAGAGTTGGAGGCGTGCATTAGAAGATAGCGCTACTGTCTATGTAAACGAACATTTCCCTGATGGAGCTGTTGAAGTTTACGCCCTGAGGTCGAATGATGGTGCACGCTCTCTCGTTATGTGCATTGAATCTCACTTCAGTAAACATCAATCAACTGGACGATGGCGATCCGAATGGACCTTCAAGCTAGTTGGACAAAAATCGATGGAGTTTTCGATTCATGGTGTTATTAAGGTTCAGACACATTTATACGAAGAGGGGAATGTTCAATTGATTTCATCCAAAAGAGTTGATTTCATTGTCTCTGAATCTCTCCC ]
[+] EMBL CD116184 [ ACCATCTCGAGCAGACAGTCAGTGATGCTAAAAGTTTTGACAAGAGTAGCTTTGATAATATAGACTGTGATCTGGAGAGCTGGAGGCGTGCATTAGAAGATAGCGCTACTGTCTATGTAAACGAACATTTCCCTGATGGAGCTGTTGAAGTTTACGCCCTGAGGTCGAATGATGGTGCACGCTCTCTCGTTATGTGCATTGAATCTCACTTCAGTAAACATCAATCAACTGGACGATGGCGATCCGAATGGACCTTCAAGCTAGTTGGACAAAAATCGATGGAGTTTTCGATTCATGGTGTTATTAAGGTTCAGACACATTTATACGAAGAGGGGAATGTTCAATTGATTTCATCCAAAGAAGTTGATTTCATTGTCTCTGAATCTCTCCCTAGAATATTTGCCAGGGAATCAATANAGAGAATAAAAGAAGCTGACTGTGCATATCANATTGCCATTGGCGAGA ]
[+] EMBL CD154582 [ ACCATCTCAAGCAGACAGTCAGTGATGTTAAAAGTTTTGACAAGAGTAGCTTTGATAATATAGACTGTGATCTGGAGAGTTGGAGGCGTGCATTAGAAGATAGCGCTACTGTCTATGTAAACGAACATTTCCCTGATGGAGCTGTTGAAGTTTACGCCCTGAGGTCGAATGATGGTGCACGCTCTCTCGTTATGTGCATTGAATCTCACTTCAGTAAACATCAATCAACTGGACGATGGCGATCCGAATGGACCTTCAAGCTAGTTGGACAAAAATCGATGGAGTTTTCGATTCATGGTGTTATTAAGGTTCAGACACATTTATACGAAG ]
[+] EMBL CD189836 [ GGCGTGCATTAGAAGATAGCGCTACTGTCTATGTAAACGAACATTTCCCTGATGGAGCTGTTGAAGTTTACGCCCTGAGGTCGAATGATGGTGCACGCTCTCTCGTTATGTGCATTGAATCTCACTTCAGTAAACATCAATCAACTGGACGATGGCGATCCGAATGGACCTTCAAGCTAGTTGGACAAAAATCGATGGAGTTTTCGATTCATGGTGTTATTAAGGTTCAGACACATTTATACGAAGAGGGGAATGTTCAATTGATTTCATCCAGAGAAGTTGATTTCATTGTCTCTGAATCTCTCCCT ]
[+] EMBL CD195023 [ GCATTAGAAGATAGCGCTACTGTCTATGTAAACGAACATTTCCCTGATGGAGCTGTTGAAGTTTACGCCCTGAGGTCGAATGATGGTGCACGCTCTCTCGTTATGTGCATTGAATCTCACTTCAGTAAACATCAATCAACTGGACGATGGCGATCCGAATGGACCTTCAAGCTAGTTGGACAAAAATCGATGGAGTTTTCGATTCATGGTGTTATTAAGGTTCAGACACATTTATACGAAGAGGGGAATGTTCAATTGATTTCATCCAAAGAAGTTGATTTCATTGTCTCTGAATCTCTCCCTAGAATATTTGCCAGGGAATCAATAAAGAGAATAAAAGAAGCTGACTGTGCATATCANATTGCCATTGGCGAGAACTTCAAAACAATGTCCGACACAACTNTCAAAGCTCTTCGGCGACAATTGCCTTTAACTCGTTCNCAACTGGATTGGAAT AAATCAT ]
[+] EMBL CD153451 [ AAGTTTACGCCCTGAGGTCCAATGATGGTGCACGCTCTCTCGTTATGTGCATTGAATCTCACTTCAGTAAACATCAATCAACCGGACGATGGCGATCCGAATGGACCTTCAAGCTAGTTGGACAAAAATCGATGGAGTTTTCGATTCATGGTGTTATTAAGGTTCAGACACATTTATACGAAGAGGGGAATGCTCAATTGAT ]
[+] EMBL CD141653 [ AATTGATTTCATCCAAAGAAGTTGATTTCATTGTCTCTGAATCTCTCCCTAGAATATTTGCCAGGGAATCAATAAAGAGAATAAAAGAAGCTGACTGTGCATATCAAATTGCCATTGGCGAGAACTTCAAAACAATGTCCGACACAACTTTCAAAGCTCTTCGGCGACAATTGCCTTTAACTCGTTCCAAACTGGATTGGAATAAAATCATCACTTATCAGATAGGTAGCGAACTATCTAGAGCCACCACCAAATTAAAATTATCAGNTGAAGTTAATTTTCTTTTCATTACACACACACACGCACTACTCCTTT ]
[+] EMBL CD141435 [ AATTGATTTCATCCAAAGAAGTTGATTTCATTGTCTCTGAATCTCTCCCTAGAATATTTGCCAGGGAATCAATAAAGAGGATAAAAGAAGCTGACTGTGCATATCAAATTGCCATTGGCGAGAACTTCAAAACAATGTCCGACACAACTTTCAAAGCTCTTCGGCGACAATTGCCTTTAACTCGTTCCAAACTGGATTGGAATAAAATCATCACTTATCAGATAGGTAGCGAACTATCTAGAG CACCACCAAATTNAAATTATCAGTTGAAGTTAATTTTCTTTTTATTACACACACACACGCACTACTCCTTTTGGCCGATAAGGTAAAtt ]
[+] EMBL CD141271 [ AATTGATTTCATCCAAAGAAGTTGATTTCATTGTCTCTGAATCTCTCCCTAGAATATTTGCCAGGGAATCAATAAAGAGAATAAAAGAAGCTGACTGTGCATATCAAATTGCCATTGGCGAGAACTTCAAAACAATGTCCGACACAACTTTCAAAGCTCTTCGGCGACAATTGCCTTTAACTCGTTCCAAACTGGATTGGAATAAAATCATCACTTATCAGATAGGTAGCGAACTATCTAGAG CACCACCAAATTAAAATTATCAGTTGAAGTTAATTTTCTTTTCATTACACACACACACGCACTACTCCTTTTGNCCGATAAGGTAAAATTGGAGACGATTTAATATATTTTGATTTTT ]
[+] EMBL CD135903 [ AGCTGACTGTGCATATCAAATTGCCATTGGCGAGAACTTCAAAACAATGTCCGACACAACTTTCAAAGCTCTTCGGCGACAATTGCCTTTAACTCGTTCCAAACTGGATTGGAATAAAATCATCACTTATCAGATAGGTAGCGAACTATCTAGAG CACCACCAAATTAAAATTATCAGTTGAAGGTAATCGTCTTTGTGTTACACACACACA ]
[-] EMBL CD073222 [ TGCCTTTAACTCGTTCCAAACTGGATTGGAATAAAATCATCACTTATCAGATAGGTAGCGAACTATCTAGAG CACCACCAAATTAAAATTATCAGTTGAAGTTAATTTTCTTTTCATTACACACACACACGCACTACTCCTTTTGGCCGATAAGGTAAAATTGGAGACGATTTAATATATTTTGATTTTTGGTGTACAATAAAAATCAAGGAAATTACGAATATTTTGCCTACTCTTTAATGAATTTAATATTATTGAAATATATATATGTTCCTTTTATGAATAGTTTACTAAAAATAAACTTTACCACTATAATGATCAGGAATTGTTTTCAGTTTTGATTTTTTTGCAACTCGATGATTTATCCAAGTCGTCATGTGTATTTTTTTGTTTTCCTCTTTCGTTACT TTTGATACATCTGTATTTAAAAAAAAGAAAACATCTCTAATTGTGTATGGTAGATGGTACATTTCACCATTAATTTTATTTGTGTTGATTCGATATATACGTTATAATTAATTA]
[-] EMBL CD141175 [ TAAAAATCAAGGAAATTACGAATATTTTGCCTACTCTCTAATGAATTTAATATTATTGAAATATATATATGTTCCTTTTATGAATAGTTTACTAAAAATAAACTTTACCACTATAATGATCAGGAATTGTTTTCAGTTTTGATTTTTTTGCAACTCGATGA TTATCCAAGTCGTCATGTGTATTT ]
[-] EMBL AA999535 [ ACTCTCTAATGAATTTAATATTATTGAAATATATATATGTTCCTTTTATGAATAGTTTACTAAAAATAAACTTTACCACTATAATGATCAGGAATTGTTTTCAGTTTTGATTTTTTTGCAACTCGATGATTTATCCAAGTCGTCATGTGTATTTTTTTGTTTTCCTCTTTCGTTACTGTTTGATACATCTGTATTTAAAAAAAGGAAAACATCTCTAATTGTGTATGGTAGATGGTACATTTCACCATTAATTTTATTTGTGTTGATTCGATATATACGTTA ]
consensusID : consensus_10529#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence
[AGCGCGCCGTTCTTGACTCTACGGCTTGTCGATTTGCTACTCGCTAAGATGGTGGATGGAGATATTACGCCTGAGGATAAGGCAGATATATGTGCTAGATTGGTTTTGCTTGCACCACCCTGTGAATTTAATGAAGTATTAGATGATATCCGTTGTTTCGCTGGTGATGATCATCAGATTCAAGAGAAGCTAGCAGCTAGCGCAGTATAACAAGGACCAAATGATTCATGTGAAGTTACCAAATTGCGAGTATCCGACTCTGATTACTGCATACGCAGACTTGGGAAATGGATATTTTATGTGTCCTAGGTCGCAGTTGACATTTCACTTCGACCATCTCAAGCAGACACTTTGATAATATAGACTGTGATCTGGAGAGTTGGAGGCGTGCATTAGAAGATAGCGCTACTGTCTATGNTAACGAACATT]
[+] EMBL CD197968 [AGCGCGCCGTTCTTGACTCTACGGCTTGTCGATTTGCTACTCGCTAAGATGGTGGATGGAGATATTACGCCTGAGGATAAGGCAGATATATGTGCTAGATTGGTTTTGCTTGCACCACCCTGTGAATTTAATGAAGTATTAGATGATATCCGTTGTTTCGCTGGTGATGATCATCAGATTCAAGAGAAGCTAGCAGCTAGCGCAGTATAACAAGGACCAAATGATTCATGTGAAGTTACCAAATTGCGAGTATCCGACTCTGATTACTGCATACGCAGACTTGGGAAATGGATATTTTATGTGTCCTAGGTCGCAGTTGACATTTCACTTCGACCATCTCAAGCAGACACTTTGATAATATAGACTGTGATCTGGAGAGTTGGAGGCGTGCATTAGAAGATAGCGCTACTGTCTATGNTAACGAACATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10529#0 AGCTTGCTGNTCTCTGACTCAAAGGATAAGTCGATTTGCTACTCGCTAAGATGGTGGATG 60
consensus_10529#1 AGCGCGCCGTTCT-TGACTCTACGGCTT-GTCGATTTGCTACTCGCTAAGATGGTGGATG 58
*** ** * *** ****** * ** * *******************************
consensus_10529#0 GAGATATTACGCCTGAGGATAAGGCAGATATATGTGCTATATTGGTTTTGCTTGCACCAC 120
consensus_10529#1 GAGATATTACGCCTGAGGATAAGGCAGATATATGTGCTAGATTGGTTTTGCTTGCACCAC 118
*************************************** ********************
consensus_10529#0 CCTGTGAATTTAATGAAGTATTAGATGATATCCGTTGTTTCGCTGGTGATGATCATCAAA 180
consensus_10529#1 CCTGTGAATTTAATGAAGTATTAGATGATATCCGTTGTTTCGCTGGTGATGATCATCAGA 178
********************************************************** *
consensus_10529#0 TTCAAGAGAAGCTAGCAGCATCAGTAGCGCAGTATAACAAGGACCAAATGATTCATGTGA 240
consensus_10529#1 TTCAAGAGAAGCTAGCAGC-----TAGCGCAGTATAACAAGGACCAAATGATTCATGTGA 233
******************* ************************************
consensus_10529#0 AGTTACCAAATTGCGAGTATCCGACTCTGATTACTGCATACGCAGACTTGGGAAATGGAT 300
consensus_10529#1 AGTTACCAAATTGCGAGTATCCGACTCTGATTACTGCATACGCAGACTTGGGAAATGGAT 293
************************************************************
consensus_10529#0 ATTTTATGTGTCCTAGGTCGCAGTTGACATTTCACTTCGACCATCTCAAGCAGACAGTCA 360
consensus_10529#1 ATTTTATGTGTCCTAGGTCGCAGTTGACATTTCACTTCGACCATCTCAAGCAGACA---- 349
********************************************************
consensus_10529#0 GTGATGTTAAAAGTTTTGACAAGAGTAGCTTTGATAATATAGACTGTGATCTGGAGAGTT 420
consensus_10529#1 ----------------------------CTTTGATAATATAGACTGTGATCTGGAGAGTT 381
********************************
consensus_10529#0 GGAGGCGTGCATTAGAAGATAGCGCTACTGTCTATGTAAACGAACATTTCCCTGATGGAG 480
consensus_10529#1 GGAGGCGTGCATTAGAAGATAGCGCTACTGTCTATGNTAACGAACATT------------ 429
************************************ **********
consensus_10529#0 CTGTTGAAGTTTACGCCCTGAGGTCGAATGATGGTGCACGCTCTCTCGTTATGTGCATTG 540
consensus_10529#1 ------------------------------------------------------------
consensus_10529#0 AATCTCACTTCAGTAAACATCAATCAACTGGACGATGGCGATCCGAATGGACCTTCAAGC 600
consensus_10529#1 ------------------------------------------------------------
consensus_10529#0 TAGTTGGACAAAAATCGATGGAGTTTTCGATTCATGGTGTTATTAAGGTTCAGACACATT 660
consensus_10529#1 ------------------------------------------------------------
consensus_10529#0 TATACGAAGAGGGGAATGTTCAATTGATTTCATCCAAAGAAGTTGATTTCATTGTCTCTG 720
consensus_10529#1 ------------------------------------------------------------
consensus_10529#0 AATCTCTCCCTAGAATATTTGCCAGGGAATCAATAAAGAGAATAAAAGAAGCTGACTGTG 780
consensus_10529#1 ------------------------------------------------------------
consensus_10529#0 CATATCAAATTGCCATTGGCGAGAACTTCAAAACAATGTCCGACACAACTTTCAAAGCTC 840
consensus_10529#1 ------------------------------------------------------------
consensus_10529#0 TTCGGCGACAATTGCCTTTAACTCGTTCCAAACTGGATTGGAATAAAATCATCACTTATC 900
consensus_10529#1 ------------------------------------------------------------
consensus_10529#0 AGATAGGTAGCGAACTATCTAGAGCACCACCAAATTAAAATTATCAGTTGAAGTTAATTT 960
consensus_10529#1 ------------------------------------------------------------
consensus_10529#0 TCTTTTCATTACACACACACACGCACTACTCCTTTTGGCCGATAAGGTAAAATTGGAGAC 1020
consensus_10529#1 ------------------------------------------------------------
consensus_10529#0 GATTTAATATATTTTGATTTTTGGTGTACAATAAAAATCAAGGAAATTACGAATATTTTG 1080
consensus_10529#1 ------------------------------------------------------------
consensus_10529#0 CCTACTCTCTAATGAATTTAATATTATTGAAATATATATATGTTCCTTTTATGAATAGTT 1140
consensus_10529#1 ------------------------------------------------------------
consensus_10529#0 TACTAAAAATAAACTTTACCACTATAATGATCAGGAATTGTTTTCAGTTTTGATTTTTTT 1200
consensus_10529#1 ------------------------------------------------------------
consensus_10529#0 GCAACTCGATGATTTATCCAAGTCGTCATGTGTATTTTTTTGTTTTCCTCTTTCGTTACT 1260
consensus_10529#1 ------------------------------------------------------------
consensus_10529#0 TTTGATACATCTGTATTTAAAAAAAAGAAAACATCTCTAATTGTGTATGGTAGATGGTAC 1320
consensus_10529#1 ------------------------------------------------------------
consensus_10529#0 ATTTCACCATTAATTTTATTTGTGTTGATTCGATATATACGTTATAATTAATTA 1374
consensus_10529#1 ------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||