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Schistosoma mansoni
cluster # 10533 cluster # 10533       Sequences # 17       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10533#0 length = 1099 sequences # 8  
consensus_10533#1 length = 589 sequences # 6  
consensus_10533#2 length = 515 sequences # 1  
consensus_10533#3 length = 298 sequences # 1  
consensus_10533#4 length = 210 sequences # 1  

consensusID : consensus_10533#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1099
fasta sequence
                              [CTCGAGGCCAATATTCGGCACGAGGCAATGTTCTCCATCGTGATTTAAAAGCTGCAAACATTTTGATTGATAAAAACGGTATTCTTAAAATAGCAGATTTTGGTCTGGCTCGGACCACTGTTGCCTCTATTCGTCCTGACCGCCCAACACGTTATACTGGACGAGTCGTTACTCTGTGGTATCGACCTCCTGAAATTCTCCTAAATGACCGCCATTATGGAAAGCCTGTAGATATGTGGGGTGCTGGTTGTATTATGGCTGAATTATGGACAAAGTATCCTATTATGCAGGGGGACAATGAAATTAGTCAGTTGAACCTTATAATTAATCTCTGCGGATCTATAACACCTGAAATATGGCCAGGTGTAGAACGTTTGGAAACATTTAGAGAAGCTCGTCTACCTCAAGACATTAAACGACATGTTCGAGAAAAATTGACCCCCAAAATCTCTTCTCTTGCTGCTGTAGATCTCATTGATCAATTACTTGTCTTGGATCCCAGCAAGCGTCTTGATGCTGAGCAGGCGCTTTCACATGACTATTTTTATGAAGATCCTCCCGTAGGTGACTTGCGATCTTTTTCCAAGTCTGGGACATCTTATCTGGAATTCTTGTCATCAAATAACGCTCGTGGTCGTATGTTACAGGGAGCGAATCGTCCAGGGATTGTACGTGGTCCGGTTGTTGGTCCTGGGCAGCAAATGAATTATCTTAATGGGCCTGGCATCATGCATCCTAATCGACGTCTACCTTTACCAGATGACAATTCGTACTATGAGCGTGTTTTTTAGTCTGATGTGCTTGTGTCTACAATACTTTTTGAAATATTACTTCCAGAACTCATGTGTATATAGTTCACTTTGATCTTGTTTTCCGTCTTCTTTTGTCAATGTTTACTTTGGGATTGACTCCGTTTTTTACCTTTTCATGTCATGCAATCTGAATACCATAAACACTCGGTATTTAAACATATATTTCTATGTATTCATTCTGTCTTGCGCAATAATATTTAAAACTCTTTGCATGTGATAGCAATGTTTGAGTTTTCAGATATATTTAATATACGCCATAGAAGTATTGGAAAAAAAAAAAAAAAAAA]

[+] EMBL CD080772             [CTCGAGGCCAATATTCGGCACGAGGCAATGTTCTCCATCGTGATTTAAAAGCTGCAAACATTTTGATTGATAAAAACGGTATTCTTAAAATAGCAGATTTTGGTCTGGCTCGGACCACTGTTGCCTCTATTCGTCCTGACCGCCCAACACGTTATACTGGACGAGTCGTTACTCTGTGGTATCGACCTCCTGAAATTCTCCTAAATGACCGCCATTATGGAAAGCCTGTAGATATGTGGGGTGCTGGTTGTATTATGGCTGAATTATGGACAAAGTATCCTATTATGCAGGGGGACAATGAAATTAGTCAGTTGAACCTTATAATTAATCTCTGCGGATCTATAACACCTGAAATATGGCCAGGTGTAGAACGTTTGGAAACATTTAGAGAAGCTCGTCTACCTCAAGACATTAAACGACATGTTCGAGAAAAATTGACCCCCAAAATCTCTTCTCTTGCTGCTGTAGATCTCATTGATCAATTACTTGTCTTGGATCCCAGCAAGCGTCTTGATGCTGAGCAGGCGCTTTCACATGACTATTTTTATGAAGATCCTCCCGTAGGTGACTTGCGATCTTTTTCCAAGTCTGGGACATCTTATCTGGAATTCTTGTCATCAAATAACGCTCGTGGTCGTATGTTACAGGGAGCGAATCGTCCAGGGATTGTACGTGGTC                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD074697             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CTTGCTGCTGTAGATCTCATTGATCAATTACTTGTCTTGGATCCCAGCAAGCGTCTTGATGCTGAGCAGGCGCTTTCACATGACTATTTTTATGAAGATCCTCCCGTAGGTGACTTGCGATCTTTTTCCAAGTCTGGGACATCTTATCTGGAATTCTTGTCATCAAATAACGCTCGTGGTCGTATGTTACAGGGAGCGAATCGTCCAGGGATTGTACGTGGTCCGGTTGTTGGTCCTGGGCAGCAAATGAATTATCTTAATGGGCCTGGCATCATGCATCCTAATCGACGTCTACCTTTACCAGATGACAATTCGTACTATGAGCGTGTTTTTTAGTCTGATGTGCTTGTGTCTACAATACTTTTTGAAATATTACTTCCAGAACTCATGTGTATATAGTTCACTTTGATCTTGTTTTCCGTCTTCTTTTGTCAATGTTTACTTTGGGATTGACTCCGTTTTTTACCTTTTCATGTCATGCAATCTGAATACCATAAACACTCGGTATTTAAACATATATTTCTATGTATTCATTCTGTCTTGCGCAATAATATTTAAAACTCTTTGCA                                                                           ]
[+] EMBL CD154509             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ATTACTTGTCTTGGATCCCAGCAAGCGTCTTGATGCTGAGCAGGCGCTTTCACATGACTATTTTTATGAAGATCCTCCCGTAGGTGACTTGCGATCTTTTTCCAAGTCTGGGACATCTTATCTGGAATTCTTGTCATCAAATAACGCTCGTGGTCGTATGTTACAGGGAGCGAATCGTCCAGGGATTGTACGTGGTCCGGTTGTTGGTCCTGGGCAGCAAATGAATTATCTTAATGGGCCTGGCATCATGCATCCTAATCGACGTCTACCTTTACCAGATGACAATTCGTACTATGAGCGTGTTTTTTAGTCTGATGTGCTTGTGTCTACAATACTTTTTGAAATATTACTTCCAGAACTCATGTGTATATAGTTCACTTTGATCTTGTTTTCCGTCTTCTTTTGTCAATGTTTACTNTGNGATTGACTCCGTTTT                                                                                                                                                                                      ]
[-] EMBL AW017312             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TCCCGTAGGTGACTTGCGATCTTTTTCCAAGTCTGGGACATCTTATCTGGAATTCTTGTCATCAAATAACGCTCGTGGTCGTATGTTACAGGGAGCGAATCGTCCAGGGATTGTACGTGGTCCGGTTGTTGGTCCTGGGCAGCAAATGAATTATCTTAATGGGCCTGGCATCATGCATCCTAATCGACGTCTACCTTTACCAGATGACAATTCGTACTATGAGCGTGTTTTTTAGTCTGATGTGCTTGTGTCTACAATACTTTTTGAAATATTACTTCCAGAACTCATGTGTATATAGTTCACTTTGATCTTGTTTTCCGTCTTCTTTTGTCAATGTTTACTTTGGGATTGACTCCGTTTTTTACCTTTTCATGTCATGCAATCTGAATACCATAAACACTCGGTATTTAAACATATATTTCTATGTATTCATTCTGTCTTGCGCAATAATATTTAAAACTCTTTGCATGTGATAGCAATGTTTGAGTTTTCAGATATATTTAATAT                                    ]
[+] EMBL CD135450             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AATTCTTGTCATCAAATAACGCTCGTGGTCGTATGTTACAGGGAGCGAATCGTCCAGGGATTGTACGTGGTCCGGTTGTTGGTCCTGGGCAGCAAATGAATTATCTTAATGGGCCTGGCATCATGCATCCTAGTCGACGTCTACCTTTACCAGATGACAATTCGTACTATGAGCGTGTTTTTTAGTCTGATGTGCTTGTGTCTACAATACTTTGTGAAATATTACTTCCAGAACTCATGTGTATATAGTTCACTTTGATCTTGTGTTCCGTCTTCTTTTGTCAATGTTTACTTTGGGATTGACTCCGTTTT                                                                                                                                                                                      ]
[-] EMBL CD139568             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GTCC GTGNNTGGTCCTGGGCAGCAAATGAATTATCTTAATGGGCCTGGCATCATGCATCCTAATCGACGTCTACCTNTACCAGATGACAATTCGTACTATGAGCGTGTTTTTTAGTCTGATGTGCTTGTGTCTACAGTACTTTTTGAAATATTACTTCCAGAACTCATGTGTATATAGTTCACTTTGATCTTGTTTTCCGTCTTCTTTTGTCAATGTTTACTTTGGGATTGACTCCGTTTTTTACCTTTTCATGTCATGCAATCTGAATACCATAAACACTCGGTATTTAAACATATATTTCTATGTATTCATTCTGTCTTGCGCAATAATATTTAAAACTCTTTGCATGTGATAGCAATGTTTGAGTTTTCAGATATATTTAATATACGCC                               ]
[-] EMBL AI395266             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TTCCCGGTTG CAATTCGTACTATGAGCGTGTTTTTTAGTCTGATGTGCTTGTGTCTACAATACTTTTTGAAATATTACTTCCAGAACTCATGTGTATATAGTTCACTTTGATCTTGTTTTCCGTCTTCTTTTGTCAATGTTTACTTTGGGATTGACTCCGTTTTTTACCTTTTCATGTCATGCAATCTGAATACCATAAACACTCGGTATTTAAACATATATTTCTATGTATTCATTCTGTCTTGCGCAATAATATTTAAAACTCTTTGCATGTGATAGCAATGTTTGAGTTTTCAGATATATTTAATATACGCCATAGAAGTATTGGAAAAAAAAAAAAAAAAAA]
[-] EMBL AI395104             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CTCATGTGTATATAGTTCACCTTGATCATGTTTGCCGTATTCATTTGTCAATGTATACTTTGGGATTGACTCCGTTTTTTACCTTGTCATGTCATGCAATCTGAATACCATAACCAGTCGGTATTTAAACATATATTTGTATGTATTCATTCTGTCTTGCGCATTAATATTTAAAACTCCTTGCATGTGATAGCAATGTTTGAGTTTTCAGATATATTTAATATACGCCATAGAAGTATTGGAAAAAAAAAAAAAAAAA ]


>consensus_10533#0 CTCGAGGCCAATATTCGGCACGAGGCAATGTTCTCCATCGTGATTTAAAAGCTGCAAACA TTTTGATTGATAAAAACGGTATTCTTAAAATAGCAGATTTTGGTCTGGCTCGGACCACTG TTGCCTCTATTCGTCCTGACCGCCCAACACGTTATACTGGACGAGTCGTTACTCTGTGGT ATCGACCTCCTGAAATTCTCCTAAATGACCGCCATTATGGAAAGCCTGTAGATATGTGGG GTGCTGGTTGTATTATGGCTGAATTATGGACAAAGTATCCTATTATGCAGGGGGACAATG AAATTAGTCAGTTGAACCTTATAATTAATCTCTGCGGATCTATAACACCTGAAATATGGC CAGGTGTAGAACGTTTGGAAACATTTAGAGAAGCTCGTCTACCTCAAGACATTAAACGAC ATGTTCGAGAAAAATTGACCCCCAAAATCTCTTCTCTTGCTGCTGTAGATCTCATTGATC AATTACTTGTCTTGGATCCCAGCAAGCGTCTTGATGCTGAGCAGGCGCTTTCACATGACT ATTTTTATGAAGATCCTCCCGTAGGTGACTTGCGATCTTTTTCCAAGTCTGGGACATCTT ATCTGGAATTCTTGTCATCAAATAACGCTCGTGGTCGTATGTTACAGGGAGCGAATCGTC CAGGGATTGTACGTGGTCCGGTTGTTGGTCCTGGGCAGCAAATGAATTATCTTAATGGGC CTGGCATCATGCATCCTAATCGACGTCTACCTTTACCAGATGACAATTCGTACTATGAGC GTGTTTTTTAGTCTGATGTGCTTGTGTCTACAATACTTTTTGAAATATTACTTCCAGAAC TCATGTGTATATAGTTCACTTTGATCTTGTTTTCCGTCTTCTTTTGTCAATGTTTACTTT GGGATTGACTCCGTTTTTTACCTTTTCATGTCATGCAATCTGAATACCATAAACACTCGG TATTTAAACATATATTTCTATGTATTCATTCTGTCTTGCGCAATAATATTTAAAACTCTT TGCATGTGATAGCAATGTTTGAGTTTTCAGATATATTTAATATACGCCATAGAAGTATTG GAAAAAAAAAAAAAAAAAA



consensusID : consensus_10533#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 589
fasta sequence
                              [TATGTCAGACTACAGAAGATCGGGCAGGGTACGTTTGGGGAGGTTTTTAAGGTGAGGCATAAATCAACGAAACAGCACTTTGCACTGAAACGAATTCGAATGGAACAAGAAAAAGAAGGATTCCCTATAACTGCTTTACGAGAAATACGCATATTACAATCCCTTAATCATGAAAATATAGTGTGTTTAAAGGAAATATGCCACAGTCCACCGAATGCTGGTAATGGGTTCAAACCACAATTCTATCTTGTCTTTGAGTTTTGTGATCATGATCTCGCTGGCTTAAGTCAGCAGATTGATTTCACTGAACCAGTCAAAAAAGCAATAATGAAACAACTGCTTACCGGTGTTTTCTACCTTCATCTAAACAATGTTCTCCATCGTGATTTAAAAGCTGCAAACATTTTGATTGATAAAAACGGTATTCTTAAAATAGCAGATTTTGGTCTGGCTCGGACCACTGTTGCCTCTATTCGTCCTGACCGCCCAACACGTTATACTGGACGAGTCGTTACTCTGTGGTATCGACCTCCTGAAATTCTCCTAAATGACCGCCATTATGGAAAGCCTGTAGATATGTGGGGTGCTG]

[+] EMBL CD183848             [TATGTCAGACTACAGAAGATCGGGCAGGGTACGTTTGGGGAGGTTTTTAAGGTGAGGCATAAATCAACGAAACAGCACTTTGCACTGAAACGAATTCGAATGGAACAAGAAAAAGAAGGATTCCCTATAACTGCTTTACGAGAAATACGCATATTACAATCCCTTAATCATGAAAATATAGTGTGTTTAAAGGAAATATGCCACAGTCCACCGAATGCTGGTAATGGGTTCAAACCACAATTCTATCTTGTCTTTGAGTTTTGTGATCATGATCTCGCTGGCTTAAGTCAGCAGATTGATTTCACTGAACCAGTCAAAAAAGCAATAATGAAACAACTGCTTACCGGTGTTTTCTACCTTCATCTAAACAATGTTCTCCATCGTGATTTAAAAGCTGCAAACATTTTGATTGATAAAAACGGTATTCTTAAAACAGCAGATTTTGGTCTGGCTCGGACCACTGTTGCCTCTATTCGTCCTGACCG CCAACACGTTATACTGGACGAGTCGTTACTCTGTGGTATCGACCTCCTGAA                                                    ]
[+] EMBL CD183827             [TATGTCAGACTACAGGAGATCGGGCAGGGTACGTTTGGGGAGGTTTTTAAGGTGAGGCATAAATCAACGAAACAGCACTTTGCACTGAAACGAATTCGAATGGAACAAGAAAAAGAAGGATTCCCTATAACTGCTTTACGAGAAATACGCATATTACAATCCCTTAATCATGAAAATATAGTGTGTTTAAAGGAAATATGCCACAGTCCACCGAATGCTGGTAATGGGTTCAAACCACAATTCTATCTTGTCTTTGAGTTTTGTGATCATGATCTCGCTGGCTTAAGTCAGCAGATTGATTTCACTGAACCAGTCAAAAAAGCAATAATGAAACAACTGCTTACCGGTGTTTTCTACCTTCATCTAAACAATGTTCTCCATCGTGATTTAAAAGCTGCAAACATTTTGATTGATAAAAACGGTATTCTTAAAATAGCA                                                                                                                                                       ]
[-] EMBL CD130145             [                                                                                                                                                                                                                                                                             TGATCTCGCTGGCTTAAGTCAGCAGATTGATTTCACTGAACCAGTCAAAAAAGCAATAATGAAACAACTGCTTACCGGTGTTTTCTACCTTCATCTAAACAATGTTCTCCATCGTGATTTAAAAGCTGCAAACATTTTGATTGATAAAAACGGTATTCTTAAAATAGCAGATTTTGGTCTGGCTCGGACCACTGTTGCCTCTATTCGTCCTGACCGCCCAACACGTTATACTGGACGAGTCGTTACTCTGTGGTATCGACCTCCTGAAATTCTCCTAAATGACCGCCATTATGGAAAGCCTGTAGATATGTGGGGTGCTG]
[-] EMBL CD130131             [                                                                                                                                                                                                                                                                                TCTCGCTGGCTTAAGTCAGCAGATTGATTTCACTGAACCAATCAAAAAAGCAATAATGAAACAACTGCTTACCGGTGTTTTCTACCTTCATCTAAACAATGTTCTCCATCGTGATTTAAAAGCTGCAAACATTTTGATTGATAAAAACGGTATTCTTAAAATAGCAGATTTTGGTCTGGCTCGGACCACTGTTGCCTCTATTCGTCCTGACCGCCCAACACGTTATACTGGACGAGTCGTTACTCTGTGGTATCGACCTCCTGAAATTCTCCTAAATGACCGCCATTATGGAAAGCCTGTAGATATGTGGGGTGCTG]
[-] EMBL CD165200             [                                                                                                                                                                                                                                                                                                      ATTGATTTCACTGAACCAGTCAAAAAAGCAATAATGAAACAACTGCTTACCGGTGTTTTCTACCTTCATCTAAACAATGTTCTCCATCGTGATTTAAAAGCTGCAAACATTTTGATTGATAAAAACGGTATTCTTAAAATAGCAGATTTTGGTCTGGCTCGGACCACTGTTGCCTCTATTCGTCCTGACCGCCCAACACGTTATACTGGACGAGTCGTTACTCTGTGGTATCGACCTCCTGAAATTCTCCTAAATGACCGCCATTATGGAAAGCCTGTAGATATGTGGGGTGCTG]
[-] EMBL CD165102             [                                                                                                                                                                                                                                                                                                                                                                                                                             TAAAAACGGTATTCNTAAAATAGCAGATTTTGGTCTGGCTCGGACCACTGTTGCCTCTATTCGTCCTGACCGCCCAACACGTTATACTGGACGAGTCGTTACTCTGTGGTATCGACCTCCTGAAATTCTCCTAAATGACCGCCATTATGGAAAGCCTGTAGATATGTGGGGTGCTG]


>consensus_10533#1 TATGTCAGACTACAGAAGATCGGGCAGGGTACGTTTGGGGAGGTTTTTAAGGTGAGGCAT AAATCAACGAAACAGCACTTTGCACTGAAACGAATTCGAATGGAACAAGAAAAAGAAGGA TTCCCTATAACTGCTTTACGAGAAATACGCATATTACAATCCCTTAATCATGAAAATATA GTGTGTTTAAAGGAAATATGCCACAGTCCACCGAATGCTGGTAATGGGTTCAAACCACAA TTCTATCTTGTCTTTGAGTTTTGTGATCATGATCTCGCTGGCTTAAGTCAGCAGATTGAT TTCACTGAACCAGTCAAAAAAGCAATAATGAAACAACTGCTTACCGGTGTTTTCTACCTT CATCTAAACAATGTTCTCCATCGTGATTTAAAAGCTGCAAACATTTTGATTGATAAAAAC GGTATTCTTAAAATAGCAGATTTTGGTCTGGCTCGGACCACTGTTGCCTCTATTCGTCCT GACCGCCCAACACGTTATACTGGACGAGTCGTTACTCTGTGGTATCGACCTCCTGAAATT CTCCTAAATGACCGCCATTATGGAAAGCCTGTAGATATGTGGGGTGCTG



consensusID : consensus_10533#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 515
fasta sequence
                              [GACCAAGCCAGTTGATCAATATGTCAGACTACAGAAGATCGGGCAGGGTACGTTTGGGGAGGTTTTTAAGGTGAGGCATAAATCAACGAAACAGCACTTTGCACTGAAACGAATTCGAATGGAACAAGAAAAAGAAGGATTCCCTATAACTGCTTTACGAGAAATACGCGTATTACAATCCCTTAATCATGAAAATATAGTGTGTTTAAAGGAAATATGCCACAGTCCACGTAAGCCTATTCCTACCTCACGCTATTCTCAGCGAATGCTGGTAATGGGTTCAAACCACAATTCTATCTTGTCTTTGAGTTTTGTGATCATGATCTCGCTGGCTTAAGTCAGCAGATTGATTTCACTGAACCAGTCAAAAAAGCAATAATGAAACAACTGCTTACCGGTGTTTTCTACCCTCATCTAAACAATGTTCTCCATCGTGATTTANAAGCTGCAAACATTTTGATTGATAAAAACGGTATTCTTAAAATAGCAGATTTTGGTCTGGCTCGGACCACTGT]

[+] EMBL CD095794             [GACCAAGCCAGTTGATCAATATGTCAGACTACAGAAGATCGGGCAGGGTACGTTTGGGGAGGTTTTTAAGGTGAGGCATAAATCAACGAAACAGCACTTTGCACTGAAACGAATTCGAATGGAACAAGAAAAAGAAGGATTCCCTATAACTGCTTTACGAGAAATACGCGTATTACAATCCCTTAATCATGAAAATATAGTGTGTTTAAAGGAAATATGCCACAGTCCACGTAAGCCTATTCCTACCTCACGCTATTCTCAGCGAATGCTGGTAATGGGTTCAAACCACAATTCTATCTTGTCTTTGAGTTTTGTGATCATGATCTCGCTGGCTTAAGTCAGCAGATTGATTTCACTGAACCAGTCAAAAAAGCAATAATGAAACAACTGCTTACCGGTGTTTTCTACCCTCATCTAAACAATGTTCTCCATCGTGATTTANAAGCTGCAAACATTTTGATTGATAAAAACGGTATTCTTAAAATAGCAGATTTTGGTCTGGCTCGGACCACTGT]


>consensus_10533#2 GACCAAGCCAGTTGATCAATATGTCAGACTACAGAAGATCGGGCAGGGTACGTTTGGGGA GGTTTTTAAGGTGAGGCATAAATCAACGAAACAGCACTTTGCACTGAAACGAATTCGAAT GGAACAAGAAAAAGAAGGATTCCCTATAACTGCTTTACGAGAAATACGCGTATTACAATC CCTTAATCATGAAAATATAGTGTGTTTAAAGGAAATATGCCACAGTCCACGTAAGCCTAT TCCTACCTCACGCTATTCTCAGCGAATGCTGGTAATGGGTTCAAACCACAATTCTATCTT GTCTTTGAGTTTTGTGATCATGATCTCGCTGGCTTAAGTCAGCAGATTGATTTCACTGAA CCAGTCAAAAAAGCAATAATGAAACAACTGCTTACCGGTGTTTTCTACCCTCATCTAAAC AATGTTCTCCATCGTGATTTANAAGCTGCAAACATTTTGATTGATAAAAACGGTATTCTT AAAATAGCAGATTTTGGTCTGGCTCGGACCACTGT



consensusID : consensus_10533#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 298
fasta sequence
                              [CTCTATAACACCTGAAATATGGCCAGGTGTAGAACGTTTGGAAACATTTAGAGAAGCTCGTCTACCTCAAGACATTAAACGACATGTTCGAGAAAAATTGACCCCCAAAATCTCTTCTCTTGCTGCTGTAGATCTCATTGATCAATTACTTGTCTTGGATCCCAGCAAGCGTCTTGATGCTGAGCAGGCGCTTTCACATGACTATTTTTATGAAGATCCTCCCGTAGGTGACTTGCGATCTTTTTCCAAGTCTGGGACATCTTATCTGTCCCAATTTGCCCTATTGTGAGTCCGTTTA]

[+] EMBL BG930464             [CTCTATAACACCTGAAATATGGCCAGGTGTAGAACGTTTGGAAACATTTAGAGAAGCTCGTCTACCTCAAGACATTAAACGACATGTTCGAGAAAAATTGACCCCCAAAATCTCTTCTCTTGCTGCTGTAGATCTCATTGATCAATTACTTGTCTTGGATCCCAGCAAGCGTCTTGATGCTGAGCAGGCGCTTTCACATGACTATTTTTATGAAGATCCTCCCGTAGGTGACTTGCGATCTTTTTCCAAGTCTGGGACATCTTATCTGTCCCAATTTGCCCTATTGTGAGTCCGTTTA]


>consensus_10533#3 CTCTATAACACCTGAAATATGGCCAGGTGTAGAACGTTTGGAAACATTTAGAGAAGCTCG TCTACCTCAAGACATTAAACGACATGTTCGAGAAAAATTGACCCCCAAAATCTCTTCTCT TGCTGCTGTAGATCTCATTGATCAATTACTTGTCTTGGATCCCAGCAAGCGTCTTGATGC TGAGCAGGCGCTTTCACATGACTATTTTTATGAAGATCCTCCCGTAGGTGACTTGCGATC TTTTTCCAAGTCTGGGACATCTTATCTGTCCCAATTTGCCCTATTGTGAGTCCGTTTA



consensusID : consensus_10533#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 210
fasta sequence
                              [CTTGGGGATGAACCCGGTTTTTACCCTTTCCATGCCATCCAATTTGATTCCCTTAACCATTCGGTATTTAACCATATATTTCAATGAATCCATTTTGTCTTGGGCATTAATATTTAAAACTCTTTGCATGTGATAGCAATGTTTGAGTTTTCAGATATATTTAATATACGCCATAGAAGTATTGGAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL AI395007             [CTTGGGGATGAACCCGGTTTTTACCCTTTCCATGCCATCCAATTTGATTCCCTTAACCATTCGGTATTTAACCATATATTTCAATGAATCCATTTTGTCTTGGGCATTAATATTTAAAACTCTTTGCATGTGATAGCAATGTTTGAGTTTTCAGATATATTTAATATACGCCATAGAAGTATTGGAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_10533#4 CTTGGGGATGAACCCGGTTTTTACCCTTTCCATGCCATCCAATTTGATTCCCTTAACCAT TCGGTATTTAACCATATATTTCAATGAATCCATTTTGTCTTGGGCATTAATATTTAAAAC TCTTTGCATGTGATAGCAATGTTTGAGTTTTCAGATATATTTAATATACGCCATAGAAGT ATTGGAAAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10533#0      CTCGAGGCCAATATTCGGCACGAGGCAATGTTCTCCATCGTGATTTAAAAGCTGCAAACA 60
consensus_10533#3      ------------------------------------------------------------
consensus_10533#4      ------------------------------------------------------------
consensus_10533#1      ------------------------------------------------------------
consensus_10533#2      ------------------------------------------------------------
                                                                                   

consensus_10533#0      TTTTGATTGATAAAAACGGTATTCTTAAAATAGCAGATTTTGGTCTGGCTCGGACCACTG 120
consensus_10533#3      ------------------------------------------------------------
consensus_10533#4      ------------------------------------------------------------
consensus_10533#1      ------------------------------------------------------------
consensus_10533#2      ------------------------------------------------------------
                                                                                   

consensus_10533#0      TTGCCTCTATTCGTCCTGACCGCCCAACACGTTATACTGGACGAGTCGTTACTCTGTGGT 180
consensus_10533#3      ------------------------------------------------------------
consensus_10533#4      ------------------------------------------------------------
consensus_10533#1      ------------------------------------------------------------
consensus_10533#2      ------------------------------------------------------------
                                                                                   

consensus_10533#0      ATCGACCTCCTGAAATTCTCCTAAATGACCGCCATTATGGAAAGCCTGTAGATATGTGGG 240
consensus_10533#3      ------------------------------------------------------------
consensus_10533#4      ------------------------------------------------------------
consensus_10533#1      ------------------------------------------------------------
consensus_10533#2      -------------------------------------------------GACCAAGCCAG 11
                                                                                   

consensus_10533#0      GTGCTGGTTGTATTATGGCTGAATTATGGACAAAGTATCCTATTATGCAGGGGGACAATG 300
consensus_10533#3      ------------------------------------------------------------
consensus_10533#4      ------------------------------------------------------------
consensus_10533#1      --------TATGTCAGACTACAGAAGATCGGGCAGGGTACGTTTGGGGAGGTTTTTAAGG 52
consensus_10533#2      TTGATCAATATGTCAGACTACAGAAGATCGGGCAGGGTACGTTTGGGGAGGTTTTTAAGG 71
                                                                                   

consensus_10533#0      AAATTAGTCAGTTGAACCTTATAATTAATCTCTGCGGATCTATAACACCTGAAATATGGC 360
consensus_10533#3      -------------------------------------CTCTATAACACCTGAAATATGGC 23
consensus_10533#4      ------------------------------------------------------------
consensus_10533#1      TGAGGCATAAATCAACGAAACAGCACTTTGCACTGAAACGAATTCGAATGGAACAAGAAA 112
consensus_10533#2      TGAGGCATAAATCAACGAAACAGCACTTTGCACTGAAACGAATTCGAATGGAACAAGAAA 131
                                                                                   

consensus_10533#0      CAGGTGTAGAACGTTTGGAAACATTTAGAGAAGCTCGTCTACCTCAAGACATTAAACGAC 420
consensus_10533#3      CAGGTGTAGAACGTTTGGAAACATTTAGAGAAGCTCGTCTACCTCAAGACATTAAACGAC 83
consensus_10533#4      -----------------------CTTGGGGATGAAC-CCGGTTTTTACCCTTTCCATGCC 36
consensus_10533#1      AAGAAGGATTCCCTATAACTGCTTTACGAGAAATACGCATATTACAATCCCTTAATCATG 172
consensus_10533#2      AAGAAGGATTCCCTATAACTGCTTTACGAGAAATACGCGTATTACAATCCCTTAATCATG 191
                                               *  * **    *          *  * **       

consensus_10533#0      ATGTTCGAGAAAAATTGACCCCCAAA-ATCTCTTCTCTTGCTGCTGTAGATCTCATTGA- 478
consensus_10533#3      ATGTTCGAGAAAAATTGACCCCCAAA-ATCTCTTCTCTTGCTGCTGTAGATCTCATTGA- 141
consensus_10533#4      ATCC-------AATTTGATTCCCTTA-ACCATTCGGTATTTAACCATATATTTCAATGAA 88
consensus_10533#1      AAAATATAGTGTGTTTAAAGGAAATATGCCACAGTCCAC--------------------- 211
consensus_10533#2      AAAATATAGTGTGTTTAAAGGAAATATGCCACAGTCCACGTAAGCCTATTCCTACCTCAC 251
                       *             ** *       *   *                              

consensus_10533#0      ----------TCAATTACTTGTCTTGGATCCCAGCAAGCGTCTTGATGC-TGAGCAGGCG 527
consensus_10533#3      ----------TCAATTACTTGTCTTGGATCCCAGCAAGCGTCTTGATGC-TGAGCAGGCG 190
consensus_10533#4      ----------TCCATT--TTGTCTTGGGCATTAATAT---TTAAAACTC-TTTGCATGTG 132
consensus_10533#1      -----------CGAATGCTGGTAATGGGTTCAAACCACAATTCTATCTTGTCTTTGAGTT 260
consensus_10533#2      GCTATTCTCAGCGAATGCTGGTAATGGGTTCAAACCACAATTCTATCTTGTCTTTGAGTT 311
                                  * * *  * **  ***     *       *         *      *  

consensus_10533#0      CTTTCAC-ATGACTATTTTTATGAAGATCCTCCCGTAGGTGACTTGCGATCTTTTTCCAA 586
consensus_10533#3      CTTTCAC-ATGACTATTTTTATGAAGATCCTCCCGTAGGTGACTTGCGATCTTTTTCCAA 249
consensus_10533#4      ATAGCA--ATGTTTGAGTTTTCAGATATATTTA-ATATACGCCATAGAAGTATTGGAAAA 189
consensus_10533#1      TTGTGATCATGATCTCGCTGGCTTAAGTCAGCAGATTGATTTCACTGAACCAGTCAAAAA 320
consensus_10533#2      TTGTGATCATGATCTCGCTGGCTTAAGTCAGCAGATTGATTTCACTGAACCAGTCAAAAA 371
                        *   *  ***       *     *  *       *      *     *    *    **

consensus_10533#0      GTCTGGGACATCTTATCTGGAATTCTTGTCATCAAATAACGCTCGTGGTCGTATGTTACA 646
consensus_10533#3      GTCTGGGACATCTTATCTGT--CCCAATTTGCCCTATTGTGAGTCCGTTTA--------- 298
consensus_10533#4      AAAAAAAAAAAAAAAAAAAAA--------------------------------------- 210
consensus_10533#1      AGCAATAATGAAACAACTGCTTACCGGTGTTTTCTACCTTCATCTAAACAATGTTCTCCA 380
consensus_10533#2      AGCAATAATGAAACAACTGCTTACCGGTGTTTTCTACCCTCATCTAAACAATGTTCTCCA 431
                              *      *                                             

consensus_10533#0      GGGAGCGAATCGTCCAGGGATTGTACGTGGTCCGGTTGTTGGTCCTGGGCAGCAAATGAA 706
consensus_10533#3      ------------------------------------------------------------
consensus_10533#4      ------------------------------------------------------------
consensus_10533#1      TCGTGATTTAAAAGCTGCAAACATTTTGATTGATAAAAACGGTATTCTTAAAATAGCAGA 440
consensus_10533#2      TCGTGATTTANAAGCTGCAAACATTTTGATTGATAAAAACGGTATTCTTAAAATAGCAGA 491
                                                                                   

consensus_10533#0      TTATCTTAATGGGCCTGGCATCATGCATCCTAATCGACGTCTACCTTTACCAGATGACAA 766
consensus_10533#3      ------------------------------------------------------------
consensus_10533#4      ------------------------------------------------------------
consensus_10533#1      TTTTGGTCTGGCTCGGACCACTGTTGCCTCTATTCGTCCTGACCGCCCAACACGTTATAC 500
consensus_10533#2      TTTTGGTCTGGCTCGGACCACTGT------------------------------------ 515
                                                                                   

consensus_10533#0      TTCGTACTATGAGCGTGTTTTTTAGTCTGATGTGCTTGTGTCTACAATACTTTTTGAAAT 826
consensus_10533#3      ------------------------------------------------------------
consensus_10533#4      ------------------------------------------------------------
consensus_10533#1      TGGACGAGTCGTTACTCTGTGGTATCGACCTCCTGAAATTCTCCTAAATGACCGCCATTA 560
consensus_10533#2      ------------------------------------------------------------
                                                                                   

consensus_10533#0      ATTACTTCCAGAACTCATGTGTATATAGTTCACTTTGATCTTGTTTTCCGTCTTCTTTTG 886
consensus_10533#3      ------------------------------------------------------------
consensus_10533#4      ------------------------------------------------------------
consensus_10533#1      TGGAAAGCCTGTAGATATGTGGGGTGCTG------------------------------- 589
consensus_10533#2      ------------------------------------------------------------
                                                                                   

consensus_10533#0      TCAATGTTTACTTTGGGATTGACTCCGTTTTTTACCTTTTCATGTCATGCAATCTGAATA 946
consensus_10533#3      ------------------------------------------------------------
consensus_10533#4      ------------------------------------------------------------
consensus_10533#1      ------------------------------------------------------------
consensus_10533#2      ------------------------------------------------------------
                                                                                   

consensus_10533#0      CCATAAACACTCGGTATTTAAACATATATTTCTATGTATTCATTCTGTCTTGCGCAATAA 1006
consensus_10533#3      ------------------------------------------------------------
consensus_10533#4      ------------------------------------------------------------
consensus_10533#1      ------------------------------------------------------------
consensus_10533#2      ------------------------------------------------------------
                                                                                   

consensus_10533#0      TATTTAAAACTCTTTGCATGTGATAGCAATGTTTGAGTTTTCAGATATATTTAATATACG 1066
consensus_10533#3      ------------------------------------------------------------
consensus_10533#4      ------------------------------------------------------------
consensus_10533#1      ------------------------------------------------------------
consensus_10533#2      ------------------------------------------------------------
                                                                                   

consensus_10533#0      CCATAGAAGTATTGGAAAAAAAAAAAAAAAAAA 1099
consensus_10533#3      ---------------------------------
consensus_10533#4      ---------------------------------
consensus_10533#1      ---------------------------------
consensus_10533#2      ---------------------------------
                                                        




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)