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Schistosoma mansoni
cluster # 10566 cluster # 10566       Sequences # 18       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10566#0 length = 1545 sequences # 14  
consensus_10566#1 length = 648 sequences # 3  
consensus_10566#2 length = 321 sequences # 1  

consensusID : consensus_10566#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 14
consensus length = 1545
fasta sequence
                              [CCTCTGGTACGAGGCCTACTTGACATCGACTATATGGGTTAAGGCATACGCAGAAATGTACTGTAGAGGTATAAACCCCGTTAGTCGTTTTGTACACAGGGGCGGCAACGTAGTTGGTATGGGGTTATTGAGATCTAAAGGGATGGTTATACTTGCCGGTAACTCCCACCCTGAGTTAGTCAAAGCTGTTTGTCACCATCTTGACGTTCGTCCTGGGAACTGTTCAGTATTTTTTCGATCGAGTCGCGAGACGGATGTTGAGATTAAAGAAACTGTCAGGGGCCGAGATGTTTATATTATACAATCAGGAACTAAGGATGTCAACAATGACA-TTATGGAGCTATTGATTATTGCCTATGCGTGTAGATCAGCTTGCGCTCGTAAAGTTATTGCAGTAGTACCGTACTTACCCTACTCAACACAAAGCAAAAGAAGAAAGCGTGGACCCATCACCAGTAAACTTGTAGCCAAAATGCTCTGTGCTTCAGGAATTAACCATTTAATCACTTTGGACCTTCATTCAAAAGAGATTCAGGGGTTTTTCGATGTTCCGATTGATA-ATTTACGTGCTTCTCCGT-TTTTGACAAAGTACATTGAAACATACATAACTGATTATCGAAACGCAGTTATTGTTGCTCGAAATCCGGGAGTAGTACCTCGAGCTAGTAGTTATGCGGAACGTTTGAGGTTACCACTGGTTGTTATTCATGGAGAAGAAAGAGATGAAAGTGACAATACTGATGGTCGCAATTCCCCACCTTTGGACC-AAAGTATTGTGGAAAAAAGA-TCTACACAAATTGG-CCTTGAACTTTTACCTATGATGATACCTAAAGCTAAACCACCTTTAACCTTAGTTGGAGATGTGAATTCAAGAATCGCTATTATAATTGACGACATTATAGATGATGTATCAAAGTTTGTTAATGCTGCTGAGCTACTGCGTGAACGAGGTGCATATAAAATATTTGTTATTGCAACGCATGGTCTGCTCAGTTTAGATGCACCACGTCTATTGGAAGAAAGTCGTATAGATGAAGTAGTTGTAACTAACACAGTACCACATGAAGTGCAAAAAATGCAGTGCCACAAAATTCGTACGGTTGATATAAGTCCATTATTGGCAGAAGCTATCAGACGTATTTATAATGATGAATCTATGTCATATCTTTTTATGAATGTACCTAAAGACGATTAAATCATTTTTTTCCTTTTCACACTTGCTAGAAAAAAGACAGCCTCAAACTATTTATTATTTAAATACTAATTTGTCTAAATTGTAAAATATTAGAATTAATACTCTAGTTTATTTACTTATCATATTTACAATTAATAATTTTTTCCTACCGTTAATTAAATAATTCATGTATTCTTAGTTAGGTTTATGTTTTCCTCACGTGAAAATTGTACATATTTAGCTCATGTTATGATGAGTACTGGTGATCTAGCTCAACACTAAAGTTGTACTGGTTGTGTTCTTTCACAAAAGCTTTTTCTTTCAATTAATGCTAACTTGATAGTTCGCTTATACTGTCCTATGAATAAAGT]

[+] EMBL CD082300             [CCTCTGGTACGAGGCCTACTTGACATCGACTATATGGGTTAAGGCATACGCAGAAATGTACTGTAGAGGTATAAACCCCGTTAGTCGTTTTGTACACAGGGGCGGCAACGTAGTTGGTATGGGGTTATTGAGATCTAAAGGGATGGTTATACTTGCCGGTAACTCCCACCCTGAGTTAGTCAAAGCTGTTTGTCACCATCTTGACGTTCGTCCTGGGAACTGTTCAGTATTTTTTCGATCGAGTCGCGAGACGGATGTTGAGATTAAAGAAACTGTCAGGGGCCGAGATGTTTATATTATACAATCAGGAACTAAGGATGTCAACAATGACA TTATGGAGCTATTGATTATTGCCTATGCGTGTAGATCAGCTTGCGCTCGTAAAGTTATTGCAGTAGTACCGTACTTACCCTACTCAACACAAAGCAAAAGAAGAAAGCGTGGACCCATCACCAGTAAACTTGTAGCCAAAATGCTCTGTGCTTCAGGAATTAACCATTTAATCACTTTGGACCTTCATTCAAAAGAGATTCAGGGGTTTTTCGATGTTCCGATTGATA ATTTACGTGCTTCTCCGT TTTTGACAAAGTACATTGAAACATACATAACTGATT TCGAAACGCAGTTATTGTTGCTCGAAATCC GGAGTAGTACCTCGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD131948             [                                                                                                                                                                                                                                  GTATTTTTTCGATCGAGTCGCGAGACGGATGTTGAGATTAAAGAAACTGTCAGGGGCCGAGATGTTTATATTATACAATCAGGAACTAAGGATGTCAACAATGACA TTATGCAGCTATAGATTGTTGCCTATGCGTGTAGATCAGCCAGTGCTCGTACAGTTATTGCAGTAGTGCTGTACTTACCTTGCTCAACGCAAAGCAAAAGAAGAAAGCGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD082232             [                                                                                                                                                                                                                                                                                                                               ctggtacgaGACACTTATGGAGCTATTGATTATTGCCTATGCTTGTAGATCAGCTTGCGCTCGTAAAGTTATTGCAGTAGTACCGTACTTACCCTACTCAACACAAAGCAAAAGAAGAAAGCGTGGACCCATCACCAGTAAACTTGTAGCCAAAATGCTCTGTGCTTCAGGAATTAACCATTTAATCACTTTGGACCTTCATTCAAAAGAGATTCAGGGGTTTTTCGATGTTCCGATTGATA ATTTACGTGCTTCTCCGT TTTTGACAAAGTACATTGAAACATACATAACTGATTATCGAAACGCAGTTATTGTTGCTCGAAATCCGGGAGTAGTACCTCGAGCTAGTAGTTATGCGGAACGTTTGAGGTTACCACTGGTTGTTATTCATGGAGAAGAAAGAGATGAAAGTGACAATACTGATGGTCGCAATTCCCCACCTTTGGACC AAAGTATTGTGGAAAAAAGA TCTACACAAATTGG CCTTGAACTTTTACCTATGATGATACCTAAAGCTAAACCACCTTTAACCTTAGTTGGAGATGTGAATTCAAGAATCGCTATTATAATTGACGACATTATAGATGATGTATCANAGTTTGTTAATGCTGCTGAGCTACTGCGTGAACGAGGTGCATATAAAATATTTGTTATTGCAACGCATGGTCTGCTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD157294             [                                                                                                                                                                                                                                                                                                                                                                                                                                                 AAGAAAGCGTGGACCCATCACCAGTAAACTTGTAGCCAAAATGCTCTGTGCTTCAGGAATTAACCATTTAATCACTTTGGACCTTCATTCAAAAGAGATTCAGGGGTTTTTCGATGTTCCGATTGATA ATTTACGTGCTTCTCCGT TTTTGACAAAGTACATTGAAACATACATAACTGATTATCGAAACGCAGTTATTGTTGCTCGAAATCCGGGAGTAGTACCTCGAGCTAGTAGTTATGCGGAACGTTTGAGGTTACCACTGGTTGTTATTCATGGAGAAGAAAGAGATGAAAGTGACAATACTGATGGTCGCAATTCCCCACCTTTGGACC AAAGTATTGTGGAAAAAAGA TCTACACAAATTGG CCTTGAACTTTTACCTATGATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD157331             [                                                                                                                                                                                                                                                                                                                                                                                                                                                  AGAAAGCGTGGACCCATCACCGGTAAACTTGTAGCCAAAATGCTCTGTGCTTCAGGAATTAACCATTTAATCACTTTGGACCTTCATTCAAAAGAGATTCAGGGGTTTTTCGATGTTCCGATTGATA ATTTACGTGCTTCTCCGT TTTTGACAAAGTACATTGAAACATACATAACTGATTATCGAAACGCAGTTATTGTTGCTCGAAATCCGGGAGTAGTACCTCGAGCTAGTAGTTATGCGGAACGTTTGAGGTTACCACTGGTTGTTATTCATGGAGAAGAAAGAGATGAAAGTGACAATACTGATGGTCGCAATTCCCCACCTTTGGACC AAAGTATTGTGGAAAAAAGA TCTACACAAATTGG CCTTGAACTTTTACCTATGATGATACCTAAAGCTAAACCACCTTTAACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD078270             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AATGCTCTGTGCTTCAGGAATTAACCATTTAATCACTTTGGACCTTCATTCAAAAGAGATTCAGGGGTTTTTCGATGTTCCGATTGATA ATTTACGTGCTTCTCCGT TTTTGACAAAGTACATTGAAACATACATAACTGATTATCGAAACGCAGTTATTGTTGCTCGAAATCCGGGAGTAGTACCTCGAGCTAGTAGTTATGCGGAACGTTTGAGGTTACCACTGGTTGTTATTCATGGAGAAGAAAGAGATGAAAGTGACAATACTGATGGTCGCAATTCCCCACCTTTGGACC AAAGTATTGTGGAAAAAAGA TCTACACAAATTGG CCTTGAACTTTTACCTATGATGATACCTAAAGCTAAACCACCTTTAACCTTAGTTGGAGATGTGAATTCAAGAATCGCTATTATAATTGACGACATTATAGATGATGTATCAAAGTTTGTTAATGCTGCTGAGCTACTGCGTGAACGAGGTGCATATAAAATATTTGTTATTGCAACGCATGGTCTGCTCAGTTTAGATGCACCACGTCTATTGGAAGAAAGTCGTATAGATGAAGTAGTTGTAACTAACACAGTACCACATGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD078352             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AATGCTCTGTGCTTCAGGAATTAACCATTTAATCACTTTGGACCTTCATTCAAAAGAGATTCAGGGGTTTTTCGATGTTCCGATTGATA ATTTACGTGCTTCTCCGT TTTTGACAAAGTACATTGAAACATACATAACTGATTATCGAAACGCAGTTATTGTTGCTCGAAATCCGGGAGTAGTACCTCGAGCTAGTAGTTATGCGGAACGTTTGAGGTTACCACTGGTTGTTATTCATGGAGAAGAAAGAGATGAAAGTGACAATACTGATGGTCGCAATTCCCCACCTTTGGACC AAAGTATTGTGGAAAAAAGA TCTACACAAATTGG CCTTGAACTTTTACCTATGATGATACCTAAAGCTAAACCACCTTTAACCTTAGTTGGAGATGTGAATTCAAGAATCGCTATTATAATTGACGACATTATAGATGATGTATCAAAGTTTGTTAATGCTGCTGAGCTACTGCGTGAACGAGGTGCATATAAAATATTTGTTATTGCAACGCATGGTCTGCTCAGTTTAGATGCACCACGTCTATTGGAAGAAAGTCGTATAGATGAAGTAGTTGTAACTAACACAGTACCACATGAAGTGCAAAAAATGCAGTGCCACAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD133870             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GAGATTCAGGGGTTTTTCGATGTTCCGATTGATA ATTTACGTGCTTCTCCGT TTCTGACAAAGTACATTGAAACATACATAACTGATTATCGAAACGCAGTTATTGTTGCTCGAAATCCGGGAGTAGTACCTCGAGCTAGTAGTTTTGCGGAACGTTTGAGGTTACCACTGGTTGTTATTCATGGAGAAGAAAGAGATGAAAGTGACAATACTGATGGTCGCAATTCCCCACCTTTGGACC AAAGTATTGTGGAAAAAAGA TCTACACAAATTGG CCTTGAACTTTTACCTATGATGATACCTAAAGCTAAACCACCTTTAACCTTAGTTGGAGATGTGAATTCAAGAATCGCTATTATAATTGACGACATTATAGATGATGTATCAAAGTTTGTTAATGCTGCTGAGCTACTGCGTGAACGAGGTGCATATAAAATATTTGTTATTGCAACGCATGGTCTGCTCAGTTTAGATGCACCACGTCTATTGGAAGAAAGTCGTATAGATGAAGTAGTTGTAACTAACACAGTACCACATGAAGTGCANAAAAa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD083139             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        gcacgagGACATT AGGGGTTTTTCGATGTTCCGATTGATATATTTACGTGCTTCTCCGTCTTTTGACAAAGTACATTGAAACATACATAACTGATTATCGAAACGCAGTTATTGTTGCTCGAAATCCGGGAGTAGTACCTCGAGCTAGTAGTTATGCGGAACGTTTGAGGTTACCACTGGTTGTTATTCATGGAGAAGAAAGAGATGAAAGTGACAATACTGATGGTCGCAATTCCCCACCTTTGGACC AAAGTATTGTGGAAAAAAGA TCTACACAAATTGG CCTTGAACTTTTACCTATGATGATACCTAAAGCTAAACCACCTTTAACCTTAGTTGGAGATGTGAATTCAAGAATCGCTATTATAATTGACGACATTATAGATGATGTATCAAAGTTTGTTAATGCTGCTGAGCTACTGCGTGAACGAGGTGCATATAAAATATTTGTTATTGCAACGCATGGTCTGCTCAGTTTAGATGCACCACGTCTATTGGAAGAAAGTCGTATAGATGAAGTAGTTGTAACTAACACAGTACCACATGAAGTGC ANAAATGCAGTGCCACAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD168513             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TGGTGGCATTTCCCCACCTTTGAACC AAAGTATTGTGGAAAAAAGA TCTACACAAATTGG CCTTGAACTTTTACCTATGATGATACCTAAAGCTAAACCACCTTTAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD117392             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CACCTTTGGACCAAAAGTATTGTGGAAAAAAGATTCTACACAAATTGGCCCTTGAACTTTTACCTATGATGATACCTAAAGCTAAACCACCTTTAACCTTAGTTGGAGATGTGAATTCAAGAATCGCTATTATAATTGACGACATTATAGATGATGTATCAAAGTTTGTTAATGCTGCTGAGCTACTGCGTGAACGAGGTGCATATAAAATATTTGTTATTGCAACGCATGGTCTGCTCAGTTTAGATGCACCACGTCTATTGGAAGAAAGTCGTATAGATGAAGTAGTTGTAACTAACACAGTACCACATGAAGTGCAAAAAATGCAGTGCCACAAAATTCGTACGGTTGATATAAGTCCATTATTGGCAGAAGCTATCAGACGTATTTATAATGATGAATCTATGTCATATCTTTT                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD072912             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TTGGAAGAAAGTCGTATAGATGAAGTAGTTGTAACTAACACAGTACCACATGAAGTGCAAAAAATGCAGTGCCACAAAATTCGTACGGTTGATATAAGTCCATTATTGGCAGAAGCTATCAGACGTATTTATAATGATGAATCTATGTCATATCTTTTTATGAATGTACCTAAAGACGATTAAATCATTTTTTTCCTTTTCACACTTGCTAGAAAAAAGACAGCCTCAAACTATTTATTATTTAAATACTAATTTGTCTAAATTGTAAAATATTAGAATTAATACTCTAGTTTATTTACTTATCATATTTACAATTAATAATTTTTTCCTACCGTTAATTAAATAATTCATGTATTCTTAGTTAGGTTTATGTTTTCCTCACGTGAAAATTGTACATATTTAGCTCATGTTATGATGAGTACTGGTGATCTAGCTCAACACTAAAGTTGTACTGGTTGTGTTCTTTCACAAAAGCTTTTTCTTTCAATTAATGCTAACTTGATAGTTCGCTTATACTGTCCTATGAATAAAGT]
[-] EMBL CD075842             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AGATGAAGTAGTTGTAACTAACACAGTACCACATGAAGTGCAAAAAATGCAGTGCCACAAAATTCGTACGGTTGATATAAGTCCATTATTGGCAGAAGCTATCAGACGTATTTATAATGATGAATCTATGTCATATCTTTTTATGAATGTACCTAAAGACGATTAAATCATTTTTTTCCTTTTCACACTTGCTAGAAAAAAGACAGCCTCAAACTATTTATTATTTAAATACTAATTTGTCTAAATTGTAAAATATTAGAATTAATACTCTAGTTTATTTACTTATCATATTTACAATTAATAATTTTTTCCTCCCGTTAATTAAATAATTCATGTATTCTTAGTTAGGTTTATGTTTTCCTCACGTGAAAATTGTACATATTTAGCTCATGTTATGATGAGTACTGGTGATCTAGCTCAACACTAAAGTTGTACTGGTTGTGTTCTTTCACAAAAGCTTTTTCTTTCAATTAATGCTAACTTGATAGTTCGCTTATACTGTCCTATGAATAAAGT]
[-] EMBL CD076711             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GCAAAAAATGCAGTGCCACAAAATTCGTACGGTTGATATAAGTCCATTATTGGCAGAAGCTATCAGACGTATTTATAATGATGAATCTATGTCATATCTTTTTATGAATGTACCTAAAGACGATTAAATCATTTTTTTCCTTTTCACACTTGCTAGAAAAAAGACAGCCTCAAACTATTTATTATTTAAATACTAATTTGTCTAAATTGTAAAATATTAGAATTAATACTCTAGTTTATTTACTTATCATATTTACAATTAATAATTTTTTCCTACCGTTAATTAAATAATTCATGTATTCTTAGTTAGGTTTATGTTTTCCTCACGTGAAAATTGTACATATTTAGCTCATGTTATGATGAGTACTGGTGATCTAGCTCAACACTAAAGTTGTACTGGTTGTGTTCTTTCACAAAAGCTTTTTCTTTCAATTAATGCTAACTTGATAGTTCGCTTATACTGTCCTATGAATAAAGT]


>consensus_10566#0 CCTCTGGTACGAGGCCTACTTGACATCGACTATATGGGTTAAGGCATACGCAGAAATGTA CTGTAGAGGTATAAACCCCGTTAGTCGTTTTGTACACAGGGGCGGCAACGTAGTTGGTAT GGGGTTATTGAGATCTAAAGGGATGGTTATACTTGCCGGTAACTCCCACCCTGAGTTAGT CAAAGCTGTTTGTCACCATCTTGACGTTCGTCCTGGGAACTGTTCAGTATTTTTTCGATC GAGTCGCGAGACGGATGTTGAGATTAAAGAAACTGTCAGGGGCCGAGATGTTTATATTAT ACAATCAGGAACTAAGGATGTCAACAATGACATTATGGAGCTATTGATTATTGCCTATGC GTGTAGATCAGCTTGCGCTCGTAAAGTTATTGCAGTAGTACCGTACTTACCCTACTCAAC ACAAAGCAAAAGAAGAAAGCGTGGACCCATCACCAGTAAACTTGTAGCCAAAATGCTCTG TGCTTCAGGAATTAACCATTTAATCACTTTGGACCTTCATTCAAAAGAGATTCAGGGGTT TTTCGATGTTCCGATTGATAATTTACGTGCTTCTCCGTTTTTGACAAAGTACATTGAAAC ATACATAACTGATTATCGAAACGCAGTTATTGTTGCTCGAAATCCGGGAGTAGTACCTCG AGCTAGTAGTTATGCGGAACGTTTGAGGTTACCACTGGTTGTTATTCATGGAGAAGAAAG AGATGAAAGTGACAATACTGATGGTCGCAATTCCCCACCTTTGGACCAAAGTATTGTGGA AAAAAGATCTACACAAATTGGCCTTGAACTTTTACCTATGATGATACCTAAAGCTAAACC ACCTTTAACCTTAGTTGGAGATGTGAATTCAAGAATCGCTATTATAATTGACGACATTAT AGATGATGTATCAAAGTTTGTTAATGCTGCTGAGCTACTGCGTGAACGAGGTGCATATAA AATATTTGTTATTGCAACGCATGGTCTGCTCAGTTTAGATGCACCACGTCTATTGGAAGA AAGTCGTATAGATGAAGTAGTTGTAACTAACACAGTACCACATGAAGTGCAAAAAATGCA GTGCCACAAAATTCGTACGGTTGATATAAGTCCATTATTGGCAGAAGCTATCAGACGTAT TTATAATGATGAATCTATGTCATATCTTTTTATGAATGTACCTAAAGACGATTAAATCAT TTTTTTCCTTTTCACACTTGCTAGAAAAAAGACAGCCTCAAACTATTTATTATTTAAATA CTAATTTGTCTAAATTGTAAAATATTAGAATTAATACTCTAGTTTATTTACTTATCATAT TTACAATTAATAATTTTTTCCTACCGTTAATTAAATAATTCATGTATTCTTAGTTAGGTT TATGTTTTCCTCACGTGAAAATTGTACATATTTAGCTCATGTTATGATGAGTACTGGTGA TCTAGCTCAACACTAAAGTTGTACTGGTTGTGTTCTTTCACAAAAGCTTTTTCTTTCAAT TAATGCTAACTTGATAGTTCGCTTATACTGTCCTATGAATAAAGT



consensusID : consensus_10566#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 648
fasta sequence
                              [GGGTTAAGGCATACGCAGAAATGTACTGTAGAGGTATAAACCCCGTTAGTCGTTTTGTACACAGGGGCGGCAACGTAGTTGGTATGGGGTTATTGAGATCTAAAGGGATGGTTATA-CTTGCCGGTAACTCCCACCCTGAGTTAGTCAAAGCTGTTTGTCACCATCTTGACGTTCGTCCTGGGAACTGTTCAGTATTTTTTCGATCGAGTCGCGAGACGGATGTTGAGATTAAAGAAACTGTCAGGGGTAATGTTCGGTTTTTGTTCCTCCTAATACTTAGGCCGAGATGTTTATATTATACAATCAGGAACTAAGGATGTCAACAATGACATTATGGAGCTATTGATTATTGCCTATGCGTGTAGATCAGCTTGCGCTCGTAAAGTTATTGCAGTAGTACCGTACTTACCCTACTCAACACAAAGCAAAAGAAGAAAGCGTGGACCCATCACCAGTAAACTTGTAGCCAAAATGCTCTGTGCTTCAGGAATTAACCATTTAATCACTTTGGACCTTCATTCAAAAGAGATTCAGGGGGTTCTTTCGATGTTCCGATTGATATTTTACGTGCTTCTCCGTTTTTGACAAAGTACATTGAAACATACATAACTGATTATCGAAACGCAGTTATTGTTGCTCGAATCCCGG]

[+] EMBL BF936336             [GGGTTAAGGCATACGCAGAAATGTACTGTAGAGGTATAAACCCCGTTAGTCGTTTTGTACACAGGGGCGGCAACGTAGTTGGTATGGGGTTATTGAGATCTAAAGGGATGGTTATA CTTGCCGGTAACTCCCACCCTGAGTTAGTCAAAGCTGTTTGTCACCATCTTGACGTTCGTCCTGGGAACTGTTCAGTATTTTTTCGATCGAGTCGCGAGACGGATGTTGAGATTAAAGAAACTGTCAGGGGTAATGTTCGGTTTTTGTTCCTCCTAATACTTAGGCCGAGATGTTTATATTATACAATCAGGAACTAAGGATGTCAACAATGACATTATGGAGCTATTGATT                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BF936586             [                                                  CGTTTTGTA ACAGGGGCGGCAACGTAGTTGGTATGGGGTTATTGAGATCTAAAGGGATGGTTATACCTTGCCGGTAACTCCCACCCTGAGTTAGTCAAAGCTGTTTGTCACCATCTTGACGTTCGTCCTGGGAACTGTTCAGTATTTTTTCGATCGAGTCGCGAGACGGATGTTGAGATTAAAGAAACTGTCAGGGGTAATGTTCGGTTTTTGTTCCTCCTAATACTTAGGCCGAGATGTTTATATTATACAATCAGGAACTAAGGATGTCAACAATGACATTATGGAGCTATTGATTATTGCCTATGCGTGTAGATCAGCTTGCGCTCGTAAAGTTATTGCAGTAGTACCGTACTTACCCTACTCAACACAAAGCAAAAGAAGAAAGCGTGGACCCATCACCAGTAAACTTGTAGCCAAAATGCTCTGTGCTTCAGGAATTAACCATTTAATCACTTTGGACCTTCATTCAAAAGAGATTCAGGGGGTTCTTTCGATGTTCCGATTGATATTTTACGTGCTTCTCCGTTTTTGACAAAGTACATTGAAACATACATAACTGATTATCGAAACGCAGTTATTGTTGCTCGAATCCCGG]
[+] EMBL CD165524             [                                                                                                                                                                                                                                                                                                                                                                         gcttctTCAGCTTGCGCTCGTAAAGTTATTGCAGTAGTACCGTACTTACCCTACTCAACACAAAGCAAAAGAAGAAAGCGTGGACCCATCACCAGTAAACTTGTAGCCAAAATGCTCTGTGCTTCAGGAATTAACCATTTA                                                                                                                                                   ]


>consensus_10566#1 GGGTTAAGGCATACGCAGAAATGTACTGTAGAGGTATAAACCCCGTTAGTCGTTTTGTAC ACAGGGGCGGCAACGTAGTTGGTATGGGGTTATTGAGATCTAAAGGGATGGTTATACTTG CCGGTAACTCCCACCCTGAGTTAGTCAAAGCTGTTTGTCACCATCTTGACGTTCGTCCTG GGAACTGTTCAGTATTTTTTCGATCGAGTCGCGAGACGGATGTTGAGATTAAAGAAACTG TCAGGGGTAATGTTCGGTTTTTGTTCCTCCTAATACTTAGGCCGAGATGTTTATATTATA CAATCAGGAACTAAGGATGTCAACAATGACATTATGGAGCTATTGATTATTGCCTATGCG TGTAGATCAGCTTGCGCTCGTAAAGTTATTGCAGTAGTACCGTACTTACCCTACTCAACA CAAAGCAAAAGAAGAAAGCGTGGACCCATCACCAGTAAACTTGTAGCCAAAATGCTCTGT GCTTCAGGAATTAACCATTTAATCACTTTGGACCTTCATTCAAAAGAGATTCAGGGGGTT CTTTCGATGTTCCGATTGATATTTTACGTGCTTCTCCGTTTTTGACAAAGTACATTGAAA CATACATAACTGATTATCGAAACGCAGTTATTGTTGCTCGAATCCCGG



consensusID : consensus_10566#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 321
fasta sequence
                              [TGGCAGAAGCTATCAGACGTATTTATAATGATGAATCTATGTCATATCTTTTTATGAATGTACCTAAAGACGATTAAATCATTTTTTTCCTTTTCACACTTGCTAGAAAAAAGACAGCCTCAAACTATTTATTATTTTAATACTAATTTGGCTAAATTGTAAAATATTAGAATTAATACCCTAGGTTAATTACCTATCATATTTACCATTATAAATTTTTCTCACCGGTAATTAAAAAATCCAGTAATCTCAAAGATAGGTATGTTTTCTCACGCGAAAATTTGAACATTTATCGCACGTTATGATAGAACTCGGATCTAC]

[+] EMBL AW053268             [TGGCAGAAGCTATCAGACGTATTTATAATGATGAATCTATGTCATATCTTTTTATGAATGTACCTAAAGACGATTAAATCATTTTTTTCCTTTTCACACTTGCTAGAAAAAAGACAGCCTCAAACTATTTATTATTTTAATACTAATTTGGCTAAATTGTAAAATATTAGAATTAATACCCTAGGTTAATTACCTATCATATTTACCATTATAAATTTTTCTCACCGGTAATTAAAAAATCCAGTAATCTCAAAGATAGGTATGTTTTCTCACGCGAAAATTTGAACATTTATCGCACGTTATGATAGAACTCGGATCTAC]


>consensus_10566#2 TGGCAGAAGCTATCAGACGTATTTATAATGATGAATCTATGTCATATCTTTTTATGAATG TACCTAAAGACGATTAAATCATTTTTTTCCTTTTCACACTTGCTAGAAAAAAGACAGCCT CAAACTATTTATTATTTTAATACTAATTTGGCTAAATTGTAAAATATTAGAATTAATACC CTAGGTTAATTACCTATCATATTTACCATTATAAATTTTTCTCACCGGTAATTAAAAAAT CCAGTAATCTCAAAGATAGGTATGTTTTCTCACGCGAAAATTTGAACATTTATCGCACGT TATGATAGAACTCGGATCTAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10566#0      CCTCTGGTACGAGGCCTACTTGACATCGACTATATGGGTTAAGGCATACGCAGAAATGTA 60
consensus_10566#1      -----------------------------------GGGTTAAGGCATACGCAGAAATGTA 25
consensus_10566#2      ------------------------------------------------------------
                                                                                   

consensus_10566#0      CTGTAGAGGTATAAACCCCGTTAGTCGTTTTGTACACAGGGGCGGCAACGTAGTTGGTAT 120
consensus_10566#1      CTGTAGAGGTATAAACCCCGTTAGTCGTTTTGTACACAGGGGCGGCAACGTAGTTGGTAT 85
consensus_10566#2      ------------------------------------------------------------
                                                                                   

consensus_10566#0      GGGGTTATTGAGATCTAAAGGGATGGTTATACTTGCCGGTAACTCCCACCCTGAGTTAGT 180
consensus_10566#1      GGGGTTATTGAGATCTAAAGGGATGGTTATACTTGCCGGTAACTCCCACCCTGAGTTAGT 145
consensus_10566#2      ------------------------------------------------------------
                                                                                   

consensus_10566#0      CAAAGCTGTTTGTCACCATCTTGACGTTCGTCCTGGGAACTGTTCAGTATTTTTTCGATC 240
consensus_10566#1      CAAAGCTGTTTGTCACCATCTTGACGTTCGTCCTGGGAACTGTTCAGTATTTTTTCGATC 205
consensus_10566#2      ------------------------------------------------------------
                                                                                   

consensus_10566#0      GAGTCGCGAGACGGATGTTGAGATTAAAGAAACTGTCAGGGG------------------ 282
consensus_10566#1      GAGTCGCGAGACGGATGTTGAGATTAAAGAAACTGTCAGGGGTAATGTTCGGTTTTTGTT 265
consensus_10566#2      ------------------------------------------------------------
                                                                                   

consensus_10566#0      ----------------CCGAGATGTTTATATTATACAATCAGGAACTAAGGATGTCAACA 326
consensus_10566#1      CCTCCTAATACTTAGGCCGAGATGTTTATATTATACAATCAGGAACTAAGGATGTCAACA 325
consensus_10566#2      -------------------------------------------------------TGGCA 5
                                                                                 **

consensus_10566#0      ATGACATTATGGAGCTATTGATTATTGCCTATGCGTGT-AGATCAGCTTGCGCTCGTAAA 385
consensus_10566#1      ATGACATTATGGAGCTATTGATTATTGCCTATGCGTGT-AGATCAGCTTGCGCTCGTAAA 384
consensus_10566#2      GAAGC-TATCAGACGTATTTATAATGATGAATCTATGTCATATCTTTTTATGAATGTACC 64
                           * *    **  **** ** **     **   *** * ***   **  *   ***  

consensus_10566#0      GTTATTGCAGTAGTACCGTACTTACCCTACTCAACACAAAGCAAAAGAAGAAAGCGTGGA 445
consensus_10566#1      GTTATTGCAGTAGTACCGTACTTACCCTACTCAACACAAAGCAAAAGAAGAAAGCGTGGA 444
consensus_10566#2      -TAAAGACGATTAAATCATTTTTTTCCTTTTCACACTTGCTAGAAAAAAGACAGCCTCAA 123
                        * *   *  *   * * *  **  ***  ***          *** **** *** *  *

consensus_10566#0      CCCATCACCAGTAAACTTGTAGCCAAAATGCTCTGTGCTTCAGGAATTAACCATTTAATC 505
consensus_10566#1      CCCATCACCAGTAAACTTGTAGCCAAAATGCTCTGTGCTTCAGGAATTAACCATTTAATC 504
consensus_10566#2      ACTATTT---ATTATTTTAATACTAATTTGGCTAAATTGTAAAATATTAG--AATTAATA 178
                        * **      * *  **    * **  **         * *   ****   * ***** 

consensus_10566#0      ACTTTGGACCTTCATTCAAAAGAGATTCAGGGG--TTTTTCGATGTTCCGATTGATAATT 563
consensus_10566#1      ACTTTGGACCTTCATTCAAAAGAGATTCAGGGGGTTCTTTCGATGTTCCGATTGATATTT 564
consensus_10566#2      CCCTAGGTTAATTACCTATCATATTTACCA-----TTATAAATTTTTCTCACCGGTAATT 233
                        * * **    * *   *  * *  * *       *  *    * ***  *  * ** **

consensus_10566#0      TACGTGCTTCTCCGTTTTTGACA-AAGTACATTGAAACATACATAA--CTGATTATCGAA 620
consensus_10566#1      TACGTGCTTCTCCGTTTTTGACA-AAGTACATTGAAACATACATAA--CTGATTATCGAA 621
consensus_10566#2      AAAAAATCCAGTAATCTCAAAGATAGGTATGTTTTCTCACGCGAAAATTTGAACATTTAT 293
                        *            * *   * * * ***  **    **  *  **   ***  **  * 

consensus_10566#0      ACGCA-GTTATTGTTG--CTCGAAATCCGGGAGTAGTACCTCGAGCTAGTAGTTATGCGG 677
consensus_10566#1      ACGCA-GTTATTGTTG--CTCGAATCCCGG------------------------------ 648
consensus_10566#2      -CGCACGTTATGATAGAACTCGGATCTAC------------------------------- 321
                        **** *****  * *  **** *                                    

consensus_10566#0      AACGTTTGAGGTTACCACTGGTTGTTATTCATGGAGAAGAAAGAGATGAAAGTGACAATA 737
consensus_10566#1      ------------------------------------------------------------
consensus_10566#2      ------------------------------------------------------------
                                                                                   

consensus_10566#0      CTGATGGTCGCAATTCCCCACCTTTGGACCAAAGTATTGTGGAAAAAAGATCTACACAAA 797
consensus_10566#1      ------------------------------------------------------------
consensus_10566#2      ------------------------------------------------------------
                                                                                   

consensus_10566#0      TTGGCCTTGAACTTTTACCTATGATGATACCTAAAGCTAAACCACCTTTAACCTTAGTTG 857
consensus_10566#1      ------------------------------------------------------------
consensus_10566#2      ------------------------------------------------------------
                                                                                   

consensus_10566#0      GAGATGTGAATTCAAGAATCGCTATTATAATTGACGACATTATAGATGATGTATCAAAGT 917
consensus_10566#1      ------------------------------------------------------------
consensus_10566#2      ------------------------------------------------------------
                                                                                   

consensus_10566#0      TTGTTAATGCTGCTGAGCTACTGCGTGAACGAGGTGCATATAAAATATTTGTTATTGCAA 977
consensus_10566#1      ------------------------------------------------------------
consensus_10566#2      ------------------------------------------------------------
                                                                                   

consensus_10566#0      CGCATGGTCTGCTCAGTTTAGATGCACCACGTCTATTGGAAGAAAGTCGTATAGATGAAG 1037
consensus_10566#1      ------------------------------------------------------------
consensus_10566#2      ------------------------------------------------------------
                                                                                   

consensus_10566#0      TAGTTGTAACTAACACAGTACCACATGAAGTGCAAAAAATGCAGTGCCACAAAATTCGTA 1097
consensus_10566#1      ------------------------------------------------------------
consensus_10566#2      ------------------------------------------------------------
                                                                                   

consensus_10566#0      CGGTTGATATAAGTCCATTATTGGCAGAAGCTATCAGACGTATTTATAATGATGAATCTA 1157
consensus_10566#1      ------------------------------------------------------------
consensus_10566#2      ------------------------------------------------------------
                                                                                   

consensus_10566#0      TGTCATATCTTTTTATGAATGTACCTAAAGACGATTAAATCATTTTTTTCCTTTTCACAC 1217
consensus_10566#1      ------------------------------------------------------------
consensus_10566#2      ------------------------------------------------------------
                                                                                   

consensus_10566#0      TTGCTAGAAAAAAGACAGCCTCAAACTATTTATTATTTAAATACTAATTTGTCTAAATTG 1277
consensus_10566#1      ------------------------------------------------------------
consensus_10566#2      ------------------------------------------------------------
                                                                                   

consensus_10566#0      TAAAATATTAGAATTAATACTCTAGTTTATTTACTTATCATATTTACAATTAATAATTTT 1337
consensus_10566#1      ------------------------------------------------------------
consensus_10566#2      ------------------------------------------------------------
                                                                                   

consensus_10566#0      TTCCTACCGTTAATTAAATAATTCATGTATTCTTAGTTAGGTTTATGTTTTCCTCACGTG 1397
consensus_10566#1      ------------------------------------------------------------
consensus_10566#2      ------------------------------------------------------------
                                                                                   

consensus_10566#0      AAAATTGTACATATTTAGCTCATGTTATGATGAGTACTGGTGATCTAGCTCAACACTAAA 1457
consensus_10566#1      ------------------------------------------------------------
consensus_10566#2      ------------------------------------------------------------
                                                                                   

consensus_10566#0      GTTGTACTGGTTGTGTTCTTTCACAAAAGCTTTTTCTTTCAATTAATGCTAACTTGATAG 1517
consensus_10566#1      ------------------------------------------------------------
consensus_10566#2      ------------------------------------------------------------
                                                                                   

consensus_10566#0      TTCGCTTATACTGTCCTATGAATAAAGT 1545
consensus_10566#1      ----------------------------
consensus_10566#2      ----------------------------
                                                   




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)