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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10568#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 895 fasta sequence
[TTTCTTACTAGGACAGAGTATGATCGTGGAGTTAATACGTTTTCCCCCGAGGGACGACTCTTCCAAGTAGAATACGCCATAGAAGCTACAAAGCTGGGTTCAACGGGAATCGGGATCAAGACAAGTGAGGGTGTTGTTATGGCTGTAGAAAAACGGGTAAACTCAACTTTAATCATACCATCCAGCATTGAAAAGATTTTTGAGGTGGATAAGCACATAGCATGTGCTGTTAGTGGTCTTGTTGCTGATGCAAGAACCCTCATAGAACGTGCACGTACAGAAGCAGCTCATCATTGGTTTGTGT-ACAATG-AAAAAATGACTATTGAGGATGTGACTAAAGCTGTGAGTAACTTGGCTCTAGCATTTGGTGATGATGACATGGAGTCTGGTGCAATGAGTCGTCCATTTGGCGTTGCTTTATTATTTGCTGGAGTTGATGAACGTGGTCCACAATTATATCATATGGATCCTAGTGGTACATATATTCGTTATG-AAGCTAAAGCAATTGGTTCTGGTAGTGAAGGTGCACAACAAGCATTACAAGAAATATATCATAAAAATATGACATTA-CAT-GAAGGTTGTAAACATGC-TTTATCAATTTTAAAACAAGTTAT-GGAAGAAAAAC-TTGATTCAACTAATGTAGAAATGGCAACTGTTAGTATTAAAGATAATTATCATTTATTCAATAAAGATGAAGTA-CAAAAAATAATTGAAGAAATTAATCAATCATCATCTTGAATCGATTTTCTGAACTACATCTATTATAGTACTTATATATT-TTTCC-ATGAAACCATCCTTCTTCNTCTTCCNCTTTGTTTGTTTAAACGAATTGTTTGTATTTCGTTTCTTAATTGGTTTGTTTATTTGTATGTTTTATGTAAATTAATACAAAATC]
[+] EMBL SMT14568 [TTTCTTACTAGGACAGAGTATGATCGTGGAGTTAATACGTTTTCCCCCGAGGGACGACTCTTCCAAGTAGAATACGCCATAGAAGCTACAAAGCTGGGTTCAACGGGAATCGGGATCAAGACAAGTGAGGGTGTTGTTATGGCTGTAGAAAAACGGGTAAACTCAACTTTAATCATACCATCCAGCATTGAAAAGATTTTTGAGGTGGATAAGCACATAGCATGTGCTGTTAGTGGTCTTGTTGCTGATGCAAGANCCCTCATAGAACGTGCACGTACAGAAGCAGCTCATCATTGGTTTGTGT ACAATG AAAAAATGACTATTGAGGATGTGACTAAAGCTGTGAGTAACTTGGCTCTAGCATTTGGTGATGATGACATGGAGTCTGGTGCAA ]
[-] EMBL CD187576 [ CAAGACAAGTGAGGGTGTTGTTATGGCTGTAGAAAAACGGGTAAACTCAACTTTAATCATACCATCCAGCATTGAAAAGATTTTTGAGGTGGATAAGCACATAGCATGTGCTGTTAGTGGTCTTGTTGCTGATGCAAGAACCCTCATAGAACGTGCACGTACAGAAGCAGCTCATCATTGGTTTGTGT ACAATG AAAAAATGACTATTGAGGATGTGACTAAAGCTGTGAGTAACTTGGCTCTAGCATTTGGTGATGATGACATGGAGTCTGGTGCAATGAGTCGTCCATTTGGCGTTGCTTTATTATTTGCTGGAGTTGATGAACGTGGTCCACAATTATATCATATGGA ]
[+] EMBL CD150041 [ gccCATGTGAGGGTGTTGTTATGGCTGTAGAAAAACGGGTAAACTCAACTTTAATCATACCATCCAGCATTGAAAAGATTTTTGAGGTGGATAAGCACATAGCATGTGCTGTTAGTGGTCTTGTTGTTGATGCAAGAACCCACATAGAACGTGCACGTACAGAAGCAGCTCATCATTGGTTTGTGT ACAATG AAAAAATGACTATTGAGGATGTGACTAAAGCTGTGAGTAACTTGGCTCTAGCATTT ]
[-] EMBL CD064069 [ AGCATTGAAAAGATTTTTGAGGTGGATAAGCACATAGCATGTGCTGTTAGTGGTCTTGTTGCTGATGCAAGAACCCTCATAGAACGTGCACGTACAGAAGCAGCTCATCATTGGTTTGTGT ACAATG AAAAAATGACTATTGAGGATGTGACTAAAGCTGTGAGTAACTTGGCTCTAGCATTTGGTGATGATGACATGGAGT ]
[+] EMBL CD126773 [ CATTG AAAGATTTTTGAGGTGGATAAGCACATAGCA GTGCTGTTAGTGGTCTTGTTGCTGATGCAAGAACCCTCATAGAACGTGCACGTACAGAAGCAGCTCATCATTGGTTTGTGT ACAATG AAAAAATGACTATTGAGGATGTGACTAAAGCTGTGAGTAACTTGGCTCTAGCATTTGGTGATGATGACATGGAGTCTGGTGCAATGAGTCGTCCATTTGGCGTTGCTTTATTATTTGCTGGAGTTGATGAACGTGGTCCACAATTATATCATATGGATCCTAGTGGTACATATATTCGTTATGAAAGCTAAAG ]
[+] EMBL CD145563 [ TTGAGGTGGATAAGCACATAGCATGTGCTGTTAGTGGTCTTGTTGCTGATGCAAGAACCCTCATAGAACGTGCACGTACAGAAGCAGCTCATCATTGGTTTGTGTNACAATG AAAAAATGACTATTAAGGATGTGACTAAAGCTGTGAGTAACTTGGCTCTAGCATTTGGTGATGATGACATGGAGTCTGGTGCAATGAGTCGTCCATTTGGCGTTGCTTTATTATTTGCTGGAGTTGATGAACGTGGTCCACAATTATATCATATGGATCCTAGTGGTACATATATTCGTTATG AAGCTAAAGCAATTGGTTCTGGTAG ]
[+] EMBL CD145588 [ TTGAGGTGGATAAGCACATAGCATGTGCTGTTAGTGGTCTTGTTGCTGATGCAAGAACCCTCATAGAACGTGCACGTACAGAAGCAGCTCATCATTGGTTTGTGT ACAATG AAAAAATGACTATTGAGGATGTGACTAAAGCTGTGAGTAACTTGGCTCTAGCATTTGGTGATGATGACATGGAGTCTGGTGCAATGAGTCGTCCATTTGGCGTTGCTTTATTATTTGCTGGAGTTGATGAACGTGGTCCACAATTATATCATATGGATCCTAGTGGTACATATATTCGTTATG AAGCTAAAG ]
[+] EMBL CD145558 [ TTGAGGTGGATAAGCACATAGCATGTGCTGTTAGTGGTCTTGTTGCTGATGCAAGAACCCTCATAGAACGTGCACGTACAGAAGCAGCTCATCATTGGTTTGTGT ACAATG AAAAAATGACTATTGAGGATGTGACTAAAGCTGTGAGTAACTTGGCTCTAGCATTTGGTGATGATGACATGGAGTCTGGTGCAATGAGTCGTCCATTTGGCGTTGCTTTATTATTTGCTGGAGTTGATGAACGTGGTCCACAATTATATCATATGGATCCTAGTGGTACATATATTCGTTATG AAGCTAAAGCAATTGGTTCTGGTAG ]
[+] EMBL CD202177 [ TTGAGGCGGATAAGCACATAGCATGTGCTGTTAGTGGTCTTGTTGCTGATGCAAGAACCCTCATAGAACGTGCACGTACAGAAGCAGCTCATCATTGGTTTGTGT ACAATG AAAAAATGACTATTGAGGATGTGACTAAAGCTGTGAGTAACTTGGCTCTAGCATTTGGTGATGATGACATGGAGTCTGGTGCAATGAGTCGTCCATTTGGCGTTGCTTTATTATTCGCTGGAGTTGATGAACGTGGACCACAGTTATATCATATGGATCCTAGTGGTACATATATTCGTTATG AAGCTAAAGCAATTGGTTCTGGTAG ]
[-] EMBL CD202538 [ TGAGGTGGATAAGCACATAGCATGTGCTGTTAGTGGTCTTGTTGCTGATGCAAGAACCCTCATAGAACGTGCACGTACAGAAGCAGCTCATCATTGGTTTGTGT ACAATG AAAAAATGACTATTGAGGATGTGACTAAAGCTGTGAGTAACTTGGCTCTAGCATTTGGTGATGATGACATGGAGTCTGGTGCAATGAGTCGTCCATTTGGCGTTGCTTTATTATTTGCTGGAGTTGATGAACGTGGTCCACAATTATATCATATGGATCCTAGTGGTACATATATTCGTTATG AAGCTAAAGCAATTGGTTCTGGTAGTGAAGGTGCACAACAAGCATTACAAGAAATATATCATA ]
[-] EMBL CD145429 [ TGAGGTGGATAAGCACATAGCATGTGCTGTTAGTGGTCTTGTTGCTGATGCAAGAACCCTCATAGAACGTGCACGTACAGAAGCAGCTCATCATTGGTTTGTGT ACAATGAAAAAAATGACTATTGAGGATGTGACTAAAGCTGTGAGTAACTTGGCTCTAGCATTTGGTGATGATGACATGGAGTCTGGTGCAATGAGTCGTCCATTTGGCGTTGCTTTATTATTCGCTGGAGTTGATGAACGTGGTCCACAATTATATCATATGGATCCTAGTGGTACATATATTCGTTATG AAGCTAAAGCAATTAGTTCTGGTAGT ]
[+] EMBL CD129913 [ GGTGGATAAGCACATAGCATGTGCTGTTAGTGGTCTTGTTGCTGATGCAAGAACCCTCATAGAACGTGCACGTACAGAAGCAGCTCATCATTGGTTTGTGT ACAATG AAAAAATGACTATTGAGGATGTGACTAAAGCTGTGAGTAACTTGGCTCTAGCATTTGGTGATGATGACATGGAGTCTGGTGCAATGAGTCGTCCATTTGGCGTTGCTTTATTATTTGCTGGAGTTGATGAACGTGGTCCACAATTATATCATATGGATCCTAGTGGTACATATATTCGTTATG AAGCTAAAGCAATTGGTTCTGGTAGTGAAGGTGCACAACAAGCATTACAAGAAATATATCATAAAAATATGACATTA CAT GAAGGTTGTAAACATGC TTTATCAATTTTAAAACAAGTTAT GGAAGAAAAAC TTGATTCAACTAATGTAGAAATGGCAACTGTTAGTATTAAAGATAATTATCATTTATTCAATAAAGATGAAGTA CAAAAAATAATTGAAGAAATTAATCAATCATCATCTTGAATCGATTTTCTGAACTACATCTATTATAGTACTTATATATT TTTCC ATGAAA ]
[-] EMBL CD129867 [ GGATAAGCACATAGCATGTGCTGTTAGTGGTCTTGTTGCTGATGCAAGAACCCTCATAGAACGTGCACGTACAGAAGCAGCTCATCATTGGTTTGTGT ACAATG AAAAAATGACTATTGAGGATGTGACTAAAGCTGTGAGTAACTTGGCTCTAGCATTTGGTGATGATGACATGGAGTCTGGTGCAATGAGTCGTCCATTTGGCGTTGCTTTATTATTTGCTGGAGTTGATGAACGTGGTCCACAATTATATCATATGGATCCTAGTGGTACATATATTCGTTATG AAGCTAAAGCAATTGGTTCTGGTAGTGAAGGTGCACAACAAGCATTACAAGAAATATATCATAAAAATATGACATTA CAT GAAGGTTGTAAACATGC TTTATCAATTTTAAAACAAGTTAT GGAAGAAAAAC TTGATTCAACTAATGTAGAAATGGCAACTGTTAGTATTAAAGATAATTATCATTTATTCAATAAAGATGAAGTA CATAAAATAATTGAAGAAATTAATCAATCATCATCTTGAATCGATTTTCTGAACTACATCTATTATAGTACTTATATATT TTTCC ATGAAAC ]
[-] EMBL CD155994 [ GTGCACGTACAGAAGCAGCTCATCATTGGTTTGTGT ACAATG AAAAAATGACTATTGAGGATGTGACTAAAGCTGTGAGTAACTTGGCTCCAGCATTTGGTGATGATGACATGGAGTCTGGTGCAATGAGTCGTCCATTTGGCGTTGCTTTATTATTTGCTGGAGTTGATGAACGTGGTCCACAATTATATCATATGGATCCTAGTGGTACATATATTCGTTATG AAGCTAAAGCAATTGGTTCTGGTAGTGAAGGTGCACAACAAGCATTACAAGAAATATATCATAAAAATATGACATTA CAT GAAGGTTGTAAACATGC TTTATCAATTTTAAAACAAGTTAT GGAAGAAAAAC TTGAT ]
[+] EMBL AW146496 [ TTGAGGATGTGACTAAAGCTGTGAGTAACTTGGCTCTAGCATTTGGTGATGATGACATGGAGTCTGGTGCAATGAGTCGTCCATTTGGCGTTGCTTTATTATTTGCTGGAGTTGATGAACGTGGTCCACAATTATATCATATGGATCCTAGTGGTACATATATTCGTTATG AAGCTAAAGCAATTGGTTCTGGTAGTGAAGGTGCACAACAAGCATTACAAGAAATATATCATAAAAATATGACATTA CATGGAGGGTTGTAAACATGC TTTATCAATTTTAAAACAAGTTATGGGAAGAAAAACTTTGATTCAACTAATGTAGAAATGGC ACTGTTAGTATTAAAGATAATTATCATTTATTCAATAAAGATG AGTA CAAAAAAT ATTG AGGAATT ATCCACCCTCATCTCGAATCG CTTTCTGAACAACA CTA TATAG ACTT ]
[-] EMBL CD140575 [ AAAAATATGACATGA CAT GAAGGTTGTAAACATGCGTTTATCAATTTTAAAACAAGTTAT GGAAGAAAAAC TTGATTCAACTAATGTAGGAATGGCAACTGTTAGTATTAAAGATAATTATCATTTATTCAATAAAGATGAAGTACCAAAAAATAATTGAAGAAATTAATCAATCATCATCTTGAATCGATTTTCTGAACTACATCTAATATAGTACTTATATATTATCTCCAATGGAACCATCCTTC ]
[-] EMBL SMT14567 [ AAATATGACATTACCAT GAAGGTTGTAAACATGC TTTATCAATTTTAAAACNAGTTAT GGAAGAAAAAC NTGATTCAACTAATGTAGNAATGGCNACTGTTAGTATTAAAGANAATTANCATTTANTCAATAAAGATGAAGTA CNAAAAATAATTGAAGAAATTAATCAATCATCATCTTGAANCGATTTTCTGAACCACATCTATTATAGNACTTATATATT TTTCC ATGAAACCATCCNTCTTCNTCTTCCNCTTTGTTTGTTTAAACGAATTGTTTGTATTTCGTTTCTTAATTGGTTTGTTTATTTGTATGTTTTATGTAAATTAATACAAAATC]
consensusID : consensus_10568#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 285 fasta sequence
[CATTACATGGAAGGTTGTAAACATGCTTTATCAATTTTAAAACAAGTTATGGAAGAAAAACTTGATTCAACTAATGTAGAAATGAAGTACCAAAAATAATTGAAGAAATTAATCAATCATCATCTTGAATCGATTTTCTGAACTACATCTATTATAGTACTTATATATTTTTCCATGAAACCATCCTTCTTCTTCTTCCTCTTTGTTTGTTTAAACGAATTGTTTGTATTTCGTTTCTTAATTGGTTTGTTTATTTGTATGTTTTATGTAAATTAATACAAAATC]
[-] EMBL AA999395 [CATTACATGGAAGGTTGTAAACATGCTTTATCAATTTTAAAACAAGTTATGGAAGAAAAACTTGATTCAACTAATGTAGAAATGAAGTACCAAAAATAATTGAAGAAATTAATCAATCATCATCTTGAATCGATTTTCTGAACTACATCTATTATAGTACTTATATATTTTTCCATGAAACCATCCTTCTTCTTCTTCCTCTTTGTTTGTTTAAACGAATTGTTTGTATTTCGTTTCTTAATTGGTTTGTTTATTTGTATGTTTTATGTAAATTAATACAAAATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10568#0 TTTCTTACTAGGACAGAGTATGATCGTGGAGTTAATACGTTTTCCCCCGAGGGACGACTC 60
consensus_10568#1 ------------------------------------------------------------
consensus_10568#0 TTCCAAGTAGAATACGCCATAGAAGCTACAAAGCTGGGTTCAACGGGAATCGGGATCAAG 120
consensus_10568#1 ------------------------------------------------------------
consensus_10568#0 ACAAGTGAGGGTGTTGTTATGGCTGTAGAAAAACGGGTAAACTCAACTTTAATCATACCA 180
consensus_10568#1 ------------------------------------------------------------
consensus_10568#0 TCCAGCATTGAAAAGATTTTTGAGGTGGATAAGCACATAGCATGTGCTGTTAGTGGTCTT 240
consensus_10568#1 ------------------------------------------------------------
consensus_10568#0 GTTGCTGATGCAAGAACCCTCATAGAACGTGCACGTACAGAAGCAGCTCATCATTGGTTT 300
consensus_10568#1 ------------------------------------------------------------
consensus_10568#0 GTGTACAATGAAAAAATGACTATTGAGGATGTGACTAAAGCTGTGAGTAACTTGGCTCTA 360
consensus_10568#1 ------------------------------------------------------------
consensus_10568#0 GCATTTGGTGATGATGACATGGAGTCTGGTGCAATGAGTCGTCCATTTGGCGTTGCTTTA 420
consensus_10568#1 ------------------------------------------------------------
consensus_10568#0 TTATTTGCTGGAGTTGATGAACGTGGTCCACAATTATATCATATGGATCCTAGTGGTACA 480
consensus_10568#1 ------------------------------------------------------------
consensus_10568#0 TATATTCGTTATGAAGCTAAAGCAATTGGTTCTGGTAGTGAAGGTGCACAACAAGCATTA 540
consensus_10568#1 ------------------------------------------------------------
consensus_10568#0 CAAGAAATATATCATAAAAATATGACATTACATG-AAGGTTGTAAACATGCTTTATCAAT 599
consensus_10568#1 -------------------------CATTACATGGAAGGTTGTAAACATGCTTTATCAAT 35
********* *************************
consensus_10568#0 TTTAAAACAAGTTATGGAAGAAAAACTTGATTCAACTAATGTAGAAATGGCAACTGTTAG 659
consensus_10568#1 TTTAAAACAAGTTATGGAAGAAAAACTTGATTCAACTAATGTAGAAATG----------- 84
*************************************************
consensus_10568#0 TATTAAAGATAATTATCATTTATTCAATAAAGATGAAGTACAAAAAATAATTGAAGAAAT 719
consensus_10568#1 -----------------------------------AAGTACCAAAAATAATTGAAGAAAT 109
****** ******************
consensus_10568#0 TAATCAATCATCATCTTGAATCGATTTTCTGAACTACATCTATTATAGTACTTATATATT 779
consensus_10568#1 TAATCAATCATCATCTTGAATCGATTTTCTGAACTACATCTATTATAGTACTTATATATT 169
************************************************************
consensus_10568#0 TTTCCATGAAACCATCCTTCTTCNTCTTCCNCTTTGTTTGTTTAAACGAATTGTTTGTAT 839
consensus_10568#1 TTTCCATGAAACCATCCTTCTTCTTCTTCCTCTTTGTTTGTTTAAACGAATTGTTTGTAT 229
*********************** ****** *****************************
consensus_10568#0 TTCGTTTCTTAATTGGTTTGTTTATTTGTATGTTTTATGTAAATTAATACAAAATC 895
consensus_10568#1 TTCGTTTCTTAATTGGTTTGTTTATTTGTATGTTTTATGTAAATTAATACAAAATC 285
********************************************************
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||