These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10594#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 575 fasta sequence [TAATATTTCATTAAAAGTTTTATAGGCATTAATTATATTCATTCAAAAATTATGAATACAGTAACGCTTGGTTTATTCTGCATAGCCATATGCTTAATTGGAATAAATGCCGGTACAGTTTCAAAACCTACTGCAACTGTGAAACCACAACCTGTCAATAAGATGAATACTACACCAGTCCATCAAGAAGAACCATCATTTTGGAGACGTATGTGGAATTCGTTTACTTCCATGTTTGGATCCTCAGACAGTAGCTCTGGAACGAATAATAAGGATACTAAAAGTCCAAACCCGAACACCACTGAGGCTAAAAGTCTTTCATTGAAAGAAAGGATTATGAATAAATTCAACAGTATTTTCGGAGAAGAAGAATATAATCCACCTAAAGACAGTGATTTCACTGAGAGATTATGGATGTTATTCAAACATTGTTTCTTAAATTTCAAAAATCTTGCCAAAATCTTCTCCACTTAAG-AAAATGGAAAGGATTTAGTTAAAG-AAAAGATCATTGATG-AACAATAG-AATACGTTTAATATATGTTACTGAATTCTTTTTAAAGAAAAATATATTTGATA] [+] EMBL CD186492 [TAATATTTCATTAAAAGTTTTATAGGCATTAATTATATTCATTCAAAAATTATGAATACAGTAACGCTTGGTTTATTCTGCATAGCCATATGCTTAATTGGAATAAATGCCGGTACAGTTTCAAAACCTACTGCAACTGTGAAACCACAACCTGTCAATAAGATGAATACTACACCAGTCCATCAAGAAGAACCATCATTTTGGAGACGTATGTGGAATTCGTTTACTTCCATGTTTGGATCCTCAGACAGTAGCTCTGGAACGAATAATAAGGATACTAAAAGTCCA ] [-] EMBL CD187322 [ CATTAATAATATTCATTCAAAAATTATGAATACAGTAACGCTTGGTTTATTCTGCATAGCCATATGCTTAATTGGAATAAATGCCGGTACAGTTTCAAAACCTACTGCAACTGTGAAACCACAACCTGTCAATAAGATGAATACTACACCAGTCCATCAAGAAGAACCATCATTTTGGAGACGTATGTGGAACTCGTTTACTTCCATGTTTGGATCCTCAGACAGTAGCTCTGGAACGAATAATAAGGATACTAAAAGTCCAAACCCGAACACCACTGAGGCTAAAAGTCTTTCATTGAAAGAAAGGATTATGAATAAATTTAACAGTATTTTCGGAGAAGAAGAATATAATCCACCTAAAGACAGTGATTTCACTGAGAGATTATGGATGTTATTCAAACATTGTTTCTTAAATTTCAAAAATCTTGCCAAAATCTTCTCCACTTAAG AAAATGGAAAGGATTTAGTTAA ] [+] EMBL CD186465 [ AATTATATTCATTCAAAAATTATGAATACAGTAACGCTTGGTTTATTCTGCATAGCCATATGCTTAATTGGAATAAATGCCGGTACAGTTTCAAAACCTACTGCAACTGTGAAACCACAACCTGTCAATAAGATGAATACTACACCAGTCCATCAAGAAGAACCATCATTTTGGAGACGTATGTGGAATTCGTTTACTTCCATGTTTGGATCCTCAGACAGTAGCTCTGGAACGAATAATAAGGATACTAAAAGTCCA ] [+] EMBL CD186481 [ AATTATATTCATTCAAAAATTATGAATACAGTAACGCTTGGTTTATTCTGCATAGCCATATGCTTAATTGGAATAAATGCCGGTACAGTTTCAAAACCTACTGCAACTGTGAAACCACAACCTGTCAATAAGATGAATACTACACCAGTCCATCAAGAAGAACCATCATTTTGGAGACGTATGTGGAATTCGTTTACTTCCATGTTTGGATCCTCAGACAGTAGCTCTGGAACGAATAATAAGGATACTAAAAGTCCA ] [+] EMBL CD197961 [ AATTATATTCATTCAAAAATTATGAATACAGTAACGCTTGGTTTATTCTGCATAGCCATATGCTTAATTGGAATAAATGCCGGTACAGTTTCAAAACCTACTGCAACTGTGAAACCACAACCTGTCAATAAGATGAATACTACACCAGTCCATCAAGAAGAACCATCATTTTGGAGACGTATGTGGAATTCGTTTACTTCCATGTTTGGATCCTCAGACAGTAGCTCTGGAACGAATAATAAGGATACTA ] [+] EMBL CD187402 [ AATTATATTCATTCAAAAATTATGAATACAGTAACGCTTGGTTTATTCTGCATAGCCATATGCTTAATTGGAATAAATGCCGGTACAGTTTCAAAACCTACTGCAACTGTGAAACCACAACCTGTCAATAAGATGAATACTACACCAGTCCATCAAGAAGAACCATCATTTTGGAGACGTATGTGGAATTCGTTTACTTCCATGTTTGGATCCTCAGACAGTAGCTCTGGAACGAATAATAAGGATACTAAAAGTCCAA ] [+] EMBL CD197986 [ AATTATATTCATTCAAAAATTATGAATACAGTAACGCTTGGTTTATTCTGCATAGCCATATGCTTAATTGGAATAAATGCCGGTACAGTTTCAAAACCTACTGCAACTGTGAAACCACAACCTGTCAATAAGATGAATACTACACCAGTCCATCAAGAAGAACCATCATTTTGGAGACGTATGTGGAATTCGTTTACTTCCATGTTTGGATCCTCAGACAGTAGCTCTGGAACGAATAATAAGGATACTA ] [+] EMBL CD186420 [ AATTATATTCATTCAAAAATTATGAATACAGTAACGCTTGGTTTATTCTGCATAGCCATATGCTTAATTGGAATAAATGCCGGTACAGTTTCAAAACCTACTGCAACTGTGAAACCACAACCTGTCAATAAGATGAATACTACACCAGTCCATCAAGAAGAACCATCATTTTGGAGACGTATGTGGAATTCGTTTACTTCCATGTTTGGATCCTCAGACAGTAGCTCTGGAACGAATAATAAGGATACTAAAAGTCCA ] [-] EMBL CD186445 [ ATTATATTCATTCAAAAATTATGAATACAGTAACGCTTGGTTTATTCTGCATAGCCATATGCTTAATTGGAATAAATGCCGGTACAGTTTCAAAACCTACTGCAACTGTGAAACCACAACCTGTCAATAAGATGAATACTACACCAGTCCATCAAGAAGAACCATCATTTTGGAGACGTATGTGGAATTCGTTTACTTCCATGTTTGGATCCTCAGACAGTAGCTCTGGAACGAATAATAAGGATACTAAAAGTCCAA ] [-] EMBL CD186415 [ ATTATATTCATTCAAAAATTATGAATACAGTAACGCTTGGTTTATTCTGCATAGCCATATGCTTAATTGGAATANATGCCGGTACAGTTTCAAAACCTACTGCAACTGTGAAACCACAACCTGTCAATAAGATGAATACTACACCAGTCCATCAAGAAGAACCATCATTTTGGGGACGTATGTGGAATTCGTTTACTTCCATGTTTGGATCCTCAGACAGTAGCTCTGGAACGAATAATAAGGATACTAAAAGTCCAA ] [-] EMBL CD179325 [ ATTATATTCATTCAAAAATTATGAATACAGTAACGCTTGGTTTATTCTGCATAGCCATATGCTTAATTGGAATAAATGCCGGTACAGTTTCAAAACCTACTGCAACTGTGAAACCACAACCTGTCAATAAGATGAATACTACACCAGTCCATCAAGAAGAACCATCATTTTGGAGACGTATGTGGAATTCGTTTACTTCCATGTTTGGATCCTCAGACAGTAGCTCTGGAACGAATAATAAGGATACTAAAAGTCCAAACC ] [-] EMBL CD186378 [ ATTATATTCATTCAAAAATTATGAATACAGTAACGCTTGGTTTATTCTGCATAGCCATATGCTTAATTGGAATAAATGCCGGTACAGTTTCAAAACCTACTGCAACTGTGAAACCACAACCTGTCAATAAGATGAATACTACACCAGTCCATCAAGAAGAACCATCATTTTGGAGACGTATGTGGAATTCGTTTACTTCCATGTTTGGATCCTCAGACAGTAGCTCTGGAACGAATAATAAGGATACTAAAAGTCCAA ] [+] EMBL CD084188 [ aggAAAATTATGAATACAGTAACGCTTGGTTTATTCTGCATAGCCATATGCTTAATTGGAATAAATGCCGGTACAGTTTCAAAACCTACTGCAACTGTGAAACCACAACCTGTCAATAAGATGAATACTACACCAGTCCATCAAGAAGAACCATCATTTTGGAGACGTATGTGGAATTCGTTTACTTCCATGTTTGGATCCTCAGACAGTAGCTCTGGAACGAATAATAAGGATACTAAAAGTCCAAACCCGAACACCACTGAGGCTAAAAGTCTTTCATTGAAAGAAAGGATTATGAATAAATTCAACAGTATTTTCGGAGAAGAAGAATATAATCCACCTAAAGACAGTGATTTCACTGAGAGATTATGGATGTTATTCAAACATTGTTTCTTAAATTTCAAAAATCTTGCCAAAATCTTCTCCACTTAAG AAAATGGAAAGGATTTAGTTAAAG AAAAGATCATTGATG AACAATAG AATACGTTTAATATATGTTACTGAATTCTTTTTAAAGAAAAATATATTTGATA] [+] EMBL AI111047 [ GGTTTATTCTGCATAGCCATATGCTTAATTGGAATAAATGCCGGTACAGTTTCAAAACCTACTGCAACTGTGAAACCACAACCTGTCAATAAGATGAATACTACACCAGTCCATCAAGAANAACCATCATTTTGGAGACGTATGTGGAATTCGTTTACTTCCATGTTTGGATCCTCAAACAGTAGCTCTGGAACGAATAATAAGGATACTAAAAGTCCAAACCCGAACACCACTGAGGCTAAAAGTCTTTCATTGAAAGAAAGGATTATGAATAAATTCAACAGTATTTTCGGANAANAANAATATAATCCACCTAAAGACAGTGATTTCACTGAGAGATTATGGATGTTATTCAAACATTGTTTCTTAAATTTCAAAAATCTTGCCAAAATCTTCTCCACTTAAGAAAAATGGAAAGGATTTAGTTAAAGAAAAAGATCATTGATGAAACNATAGAAATACGTTTAATATATGTTACT ] [+] EMBL AI110983 [ TATTCTGCATAGCCATATGCTTAATTGGAATAAATNCCGGTNCNGTTNCAAAACCTACTGCANCTGTGAAACCACNACCTGTCAATANGATGAATACTACACCAGTCCATCAAGAANAACCNTCATTTTGGANACGTATGTGGAATTCGTTTACTTCCATGTTTGGATCCTCAGACAGTA ] [+] EMBL CD202812 [ TAATTGGAACAAATGCCGGTACAGTTTCAAAACCTACTGCAACTGTGAAACCACAACCTGTCAATAAGATGAATACTACACCAGTCCATCAAGAAGAACCATCATTTTGGAGACGTATGTGGAATTCGTTTACTTCCATGTTTGGATCC ] [+] EMBL CD179236 [ tcgncaCCTCAGACAGTAGCTCTGGAACGAATAATAAGGATACTAAAAGTCCAAACCCGAACACCACTGAGGCTAAAAGTCTTTCATTGAAAGAAAGGATTATGAATAAATTCAACAGTATTTTCGGAGAAGTAGAATATAATCCACCTAAAGAC ] consensusID : consensus_10594#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 456 fasta sequence [GTCGATCTCCACCACNCAGGTTACCGTTCACGTTAGATCATGGAAACGACCCCATGATCCAGGAAACACGACAAGGACGTGTGAGTTGGGTTTTGCCTCCCATATAGTAAACAGTTAGTTTGCGAACTGTAATTCAATTGTCTCAATCTTGACTGTTCCGTCTGCGAATATCAGTCCATAGTCTCCGATTATTATTGTTCATGCAGTTTCATATCAATTGCATCCCGTTTCCGTTCTCTTCTTATAGATGTTCTATTGAAATATATTCAATGTACTACCGTCGTTTTATACTACTCATGTGGATATAAGTAACCCATACCATAGAAGGATCCTAAACTAAACACCTAAATGACTTAACCATCATTTTGGAGACGTATGTGGAATTCGTTTACTTCCATGTTTGGATCCTCAGACAGTAGCTCTGGAACGAATAATAAGGATACTAAAAGTCCAAAC] [-] EMBL CD194934 [GTCGATCTCCACCACNCAGGTTACCGTTCACGTTAGATCATGGAAACGACCCCATGATCCAGGAAACACGACAAGGACGTGTGAGTTGGGTTTTGCCTCCCATATAGTAAACAGTTAGTTTGCGAACTGTAATTCAATTGTCTCAATCTTGACTGTTCCGTCTGCGAATATCAGTCCATAGTCTCCGATTATTATTGTTCATGCAGTTTCATATCAATTGCATCCCGTTTCCGTTCTCTTCTTATAGATGTTCTATTGAAATATATTCAATGTACTACCGTCGTTTTATACTACTCATGTGGATATAAGTAACCCATACCATAGAAGGATCCTAAACTAAACACCTAAATGACTTAACCATCATTTTGGAGACGTATGTGGAATTCGTTTACTTCCATGTTTGGATCCTCAGACAGTAGCTCTGGAACGAATAATAAGGATACTAAAAGTCCAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10594#0 TAATATTTCATTAAAAGTTTTATAGGCATTAATTATATTCATTCAAAAATTATGAATACA 60 consensus_10594#1 ------------------------------------------------------------ consensus_10594#0 GTAACGCTTGGTTTATTCTGCATAGCCATATGCTTAATTGGAATAAATGCCGGTACAGTT 120 consensus_10594#1 ------GTCGATCTCCACCACNCAGGTTACCGTTCACGTTAGAT---CATGGAAACGACC 51 * * * * * * ** * * * * ** * ** consensus_10594#0 TCAAAACCTACTGCAACTGTGAAACCACAACCTGTCAATAAGATGAATACTACACCAGTC 180 consensus_10594#1 CCATGATCCA--GGAAACACG--ACAAGGACGTGT----GAGTTGGGTTTTGCCTC---C 100 ** * * * * ** * ** * ** *** ** ** * * * * * consensus_10594#0 CATCAAGAAGAACCATCATTTTGGAGAC-GTATGTGGAATTCGTTTACTTCCATGTTTGG 239 consensus_10594#1 CATATAGTA-AACAGTTAGTTTGCGAACTGTAATTCAATTGTCTCAATCTTGACTGTTCC 159 *** ** * *** * * **** ** *** * * * * * * * ** consensus_10594#0 ATCCTCAGACAGTAGCTCTGGAAC---GAATAATAAGGATACTAAAAGTCCAAACCCGAA 296 consensus_10594#1 GTCTGCGAATATCAGTCCATAGTCTCCGATTATTATTGTTCATGCAGTTTCATATC--AA 217 ** * * * ** * * ** ** ** * * * * * ** * * ** consensus_10594#0 CACCACTGAGGCTAAAAGTCTTTCATTGAAAGAAAGGATTATGAATAAATTCAACAGTAT 356 consensus_10594#1 TTGCATCCCGTTTCCGTTCTCTTCTTATAGATGTTCTATTG-AAATATATTCAAT-GTAC 275 ** * * *** * * * *** **** ****** *** consensus_10594#0 TTTCGGAGAAGAAGAATA-TAATCCACCTAAAGACAGTG-ATTTCACTGAGAGATTATGG 414 consensus_10594#1 TACCGTCGTTTTATACTACTCATGTGGATATAAGTAACCCATACCATAGAAGGATCCTAA 335 * ** * * * ** * ** ** * * ** ** ** *** * consensus_10594#0 AT--GTTATTCAAACATTGTTTCTTAAATTTCAAAAATCTTGCCAAAATCTTCTCCACTT 472 consensus_10594#1 ACTAAACACCTAAATGACTTAACCATCATTTTGGAGACGTATGTGGAAT-TCGTTTACTT 394 * * *** * * **** * * * *** * * **** consensus_10594#0 AAGAAAATGGAAAGGATTTAGTTAAAGAAAAGATCATTGATGAACAATA-GAATACGTTT 531 consensus_10594#1 CCATGTTTGGA-------TCCTCAGACAGTAGCTCTGGAACGAATAATAAGGATACTAAA 447 **** * * * * * ** ** * *** **** * **** consensus_10594#0 AATATATGTTACTGAATTCTTTTTAAAGAAAAATATATTTGATA 575 consensus_10594#1 AGTCCAAAC----------------------------------- 456 * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||