|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10607#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1221 fasta sequence
[TAGTTCCGATTGTCCGTAAAGTTCAGACATGCAAGGTGTTGCAGCATCTGTTACTGATACTCTTGGAAATCTCAAACCATGGCTTCAGAAAGTAACAGCTCAATCCAAACCCACTGATGCTCGGTACTCCACGACAACGAAAAAAGGTGAAATTTTTGAGCTGAAAGCTGAATTGAATAGTGAGCGAAGAGAAAAAAAGAAGGAGGCTGTTAAAAAGGTCATAGCCAGTATGACTGTAGGTAAAGACGCTAGTGCTTTGTTTCCAGATGTAATCAACTGTATGCAAACAGACAATTTGGAACTAAAAAAGCTAGTATACCTGTATCTTATGAATTATGCCAAAACACAGCCAGATACTGCAATAATGGCTGTGAATACCTTTGTAAAAGATTGCGATGAT-CCCAATCCACTTATCAGAGCGCTTGCTGTGCGAACAATGGGCTGCATACGTGTGGAGAAAATAACCGCCTATCTCTGTGACCCACTCCGTAAATGTCTTAAAGACGAAGATCCGTATGTCCGCAAGACAGCTGCAGTTTGTGTAGCAAAGCTGCATGATATAGATGCTCAGTTAGTGGAAGATAGTGGATTTTTAGAACTTTTG-AGGGATTTGTTGTGTGACAGTAACCCCATGGTAGTCGCTAATGCTGTCGCATCAATAACTGAAATATTAGAGATGACAAATTCTGATTCTGCTAGGTCCCTACTCGCCTTCGACGGCCCAGTGATTAACAAACTCCTAACAGCTCTTAATGAATGCACTGAATGGGGGCAAGTTTTTATACTTGATGCGATTGCAGATTATACACCTGGCGATGATCGTGAGGCACAAAGTATCATCGAACGCGTATCGCCGAGACTAGCACACGCAAACGCTGCTGTCGTCCTATCAACTGTTAAAGTCATTATGAAAATGTTGGAAATGGTTGATCCTGCTTCCGAAACTGCATCGACTGTGATTAGAAAGTTGGCGCCCCCACTAGTAACATTACTTTCTGCGGAACCGGAAATTCAGTATGTCGCTCTGCGCAATATTAACTTAATTGTTCAAAAGCGTAGAGATATTTTAAAGCAGGAGATAAAAGTATTTTTTGTCAAGTATAATGACCCGATCTATGTGAAACTTGAGAAACTAGATATAATGATACGTCTCATTAACCAGTCTAACATTGGTCAGGTGCTTGCTGAACTGAAGGAATACGCAAAAGAAGTTGACGTGGA]
[+] EMBL CD147187 [TAGTTCCGATTGTCCGTAAAGTTCAGACATGCAAGGTGTTGCAGCATCTGTTACTGATACTCTTGGAAATCTCAAACCATGGCTTCAGAAAGTAACAGCTCAATCCAAACCCACTGATGCTCGGTACTCCACGACAACGAAAAAAGGTGAAATTTTTGAGCTGAAAGCTGAATTGAATAGTGAGCGAAGAGAAAAAAAGAAGGAGGCTGTTAAAAAGGTCATAGCCAGTATGACTGTAGGTAAAGACGCTAGTGCTTTGTTTCCAGATGTAATCAACTGTATGCAAACAGACAATTTGGAACTAAAAAAGCTAGTATACCTGTATCTTATGAATTATGCCAAAACACAGCCAGATACTGCAATAATGGCTGTGAATACCTTTGTAAAAGATTGCGATGAT CCCAATCCACTTATCAGAGCGCTTGCTGTGCGAACAATGGGCTGCATACGTGTGGAGAAAATAAC ]
[+] EMBL CD139893 [ GGTGAAATTTTTGAGCTGAAAGCTGAATTGAATAGTGAGCGAAGAGAAAAAAAGAAGGAGGCTGTTAAAAAGGTCATAGCCAGTATGACTGTAGGTAAAGACGATAGTGCTTTGTTTCCAGATGTAATCAACTGTATGCAAACAGACAATTTGGAACTAAAAAAGCTAGTATACCTGTATCTTATGAATTATGCCAAAACACAGCCAGATACTGCAATAATGGCTGTGAATACCTTTGTAAAAGATTGCGATGAT CCCAATCCACTTATCAGAGCGCTTGCTGTGCGAACAATGNGCTGCATACGTGTGGA ]
[-] EMBL CD146795 [ GCGATGATCCCCAATCCACTANTCAGAGCGCTTGCTGTGCGAACAATGGGCTGCATACGTGTGGAGAAAATAACCGCCTATCTCTGTGACCCACTCCGTAAATGTCTTAAAGACGAAGATCCGTATGTCCGCAAGACAGCTGCAGTTTGTGTAGCAAAGCTGCATGATATAGATGCTCAGTTAGTGGAAGATAGTGGATTTTTAGAACTTTTG AGGGATTTGTTGTGTGACAGTAACCCCATGGTAGTCGCTAATGCTGTCGCATCAATAACTGAAATATTAGAGATGACAAATTCTGATTCTGCTAGGTCCCTACTCGCCTTCGACGGCCCAGTGATTAACAAACTCCTAACAGCTCTTAATGAATGCACTGAATGGGGGCAAGTTTTTATACTTGATGCGATTGCAGATTATACACCTGGCGATGATCGTGAGGCACAAAGTATCATCGAACGCGTATCGCCGAGACTAGCACACGCAAACGCTGCTGTCGTCCTATCAACTGTTAAAGTCATTATGAAAATGTTGGA ]
[+] EMBL CD196085 [ CTGTGCGAACAATGGGCTGCATACGTGTGGAGAAAATAACCGCCTATCTCTGTGACCCACTCCGTAAATGTCTTAAAGACGAAGATCCGTATGTCCGCAAGACAGCTGCAGTTTGTGTAGCAAAGCTGCATGATATAGATGCTCAGTTAGTGGAAGATAGTGGATTTTTAGAACTTTTG AGGGATTTGTTGTGTGACAGTAACCCCATGGTAGTCGCTAATGCTGTCGCATCAATAACTGAAATATTAGAGATGACAAATTCTGATTCTGCTAGGTCCCTACTCGCCTTCGACGGCCCAGTGATTAAACAACTCCCTACAGCTNCTAATGAA ]
[+] EMBL CD196119 [ CTGTGCGAACAATGGGCTGCATACGTGTGGAGAAATTAACCGCCTATCTCTGTGACCCACTCCGTAAATGTCTTAAAGACGAAGATCCGTATGTCCGCAAGACAGCTGCAGTTTGTGTAGCAAAGCTGCATGATATAGATGCTCAGTTAGTGGAAGATAGTGGATTTTTAGAACTTTTG AGGGATTTGTTGTGTGACAGTAACCCCATGGTGGTCGCTAATGCTGTCGCATNCATAACTGAAATATTAGAGATGACAAATTCTGATTCTGCTNAGTCCCTACTCG ]
[-] EMBL CD139940 [ GTGTGGAGAAAATAACCGCCTATCTCTGTGACCCACTCCGTAAATGTCTTAAAGACGAAGATCCGTATGTCCGCAAGACAGCTGCAGTTTGTGTAGCAAAGCTGCATGATATAGATGCTCAGTTAGTGGAAGATAGTGGATTTTTAGAACTTTTG AGGGATTTGTTGTGTGACAGTAACCCCATGGTAGTCGCTAATGCTGTCGCATCAATAACTGAAATATTAGAGATGACAAATTCTGATTCTGCTAGGTCCCTACTCGCCTTCGACGGCCCAGTGATTAACAAACTCCTAAC ]
[+] EMBL CD180243 [ gnGAGAAAATAACCGCCTATCTCTGTGACCCACTCCGTAAATGTCTTAAAGACGAAGATCCGTATGTCCGCAAGACAGCTGCAGTTTGTGTAGCAAAGCTGCATGATATAGATGCTCAGTTAGTGGAAGATAGTGGATTTTTAGAACTTTTG AGGGATTTGTTGTGTGACAGTAACCCCATGGTAGTCGCTAATGCTGTCGCATCAATAACTGAAATATTAGAGATGGCAAATTCTGATTCTGCTAGGTCCCTACTCGCCTTCGACGGCCCAGTGATTAAC ]
[+] EMBL CD180237 [ gnGAGAAAATAACCGCCTATCTCTGTGACCCACTCCGTAAATGTCTTAAAGACGAAGATCCGTATGTCCGCAAGACAGCTGCAGTTTGTGTAGCAAAGCTGCATGATATAGATGCTCAGTTAGTGGAAGATAGTGGATTTTTAGAACTTTTG AGGGATTTGTTGTGTGACAGTAACCCCATGGTAGTCGCTAATGCTGTCGCATCAATAACTGAAATATTAGAGATGGCAAATTCTGATTCTGCTAGGTCCCTACTCGCCTTCGACGGCCCAGTGATTAAC ]
[+] EMBL CD186175 [ CCGTATGTCCGCAAGACAGCTGCAGTTTGTGTAGCAAAGCTGCATGATATAGATGCTCAGTTAGTGGAAGATAGTGGATTTTTAGAACTTTTG AGGGATTTGTTGTGTGACAGTAACCCCATGGTAGTCGCTAATGCTGTCGCATCAATAACTGAAATATTAGAGATGACAAATTCTGATTCTGCTAGGTCCCTACTCG ]
[+] EMBL CD186109 [ CCGTATGTCCGCAAGACAGCTGCAGTTTGTGTAGCAAAGCTGCATGATATAGATGCTCAGTTAGTGGAAGATAGTGGATTTTTAGAACTTTTG AGGGATTTGTTGTGTGACAGTAACCCCATGGTAGTCGCTAATGCTGTCGCATCAATAACTGAAATATTAGAGATGACAAATTCTGATTCTGCTAGGTCCCTACTCG ]
[+] EMBL CD084284 [ GTCCGCAAGACAGCTGCAGTTTGTGTAGCAAAGCTGCATGATATAGATGCTCAGTTAGTGGAAGATAGTGGATTTTTAGAACTTTTG AGGGATTTGTTGTGTGACAGTAACCCCATGGTAGTCGCTAATGCTGTCGCATCAATAACTGAAATATTAGAGATGACAAATTCTGATTCTGCTAGGTCCCTACTCGCCTTCGACGGCCCAGTGATTAACAAACTCCTAACAGCTCTTAATGAATGCACTGAATGGGGGCAAGTTTTTATACTTGATGCGATTGCAGATTATACACCTGGCGATGATCGTGAGGCACAAAGTATCATCGAACGCGTATCGCCGAGACTAGCACACGCAAACGCTGCTGTCGTCCTATCAACTGTTAAAGTCATTATGAAAATGTTGGAAATGGTTGATCCTGCTTCCGAAACTGCATCGACTGTGATTAGAAAGTTGGCGCCCCCACTAGTAACATTACTTTCTGCGGAACCGGAAATTCAGTATGTCGCTCTGCGCAATATTAACTTAATTGTTCAAAAGCGTAGAGATATTTTAAAGCAGGAG ]
[-] EMBL CD196102 [ AGCTGCAGTTTGTGTAGCAAAGCTGCATGATATAGATGCTCAGTTAGTGGAAGATAGTGGATTTTTAGANCTTTTG AGGGATTTGTTGTGTGACAGTAACCCNATGGTAGTCGCTAATGCTGTCGCATCAATAACTGAAATATTAGAGATGACAAATTCTGATTCTGCTAGGTCCCTACTCGCCTTCGACGGCCCAGTGATTAACAAACTCCTAACAGCTCTTAATGAATGCACTGAATGGGGGCAAGTTTTTATACTTGATGCGATTGCAGATTATACACCTGGCGATGATCGTGAGGCACAAAGTATCATCGAACGCGTATCGCCGAGACTAGCACACGCAAACGCTGCTGTCGTCCTATCAACTGTTA ]
[+] EMBL CD179575 [ TGTGTAGCACACCTGCATGATATATATGCTCAGTTACTGGAAGATAGTGGTTTTTTATAACTTTTGTAGGGATTCGATGTGCGACAGTAACCCCATGGTAGTCGCTAATGCTGTCGCATGATTAACTGAAATATTAGAGATGACACATTCTGATTCTGCTAGGTCCCTACTCTCCTTCGACGGCCCAGTGATTAACTAACTACTAACAGCTCTTATTGAATGCACTGATTGGGGGCAAGTTTTTATACTTGATGCGATTGCAGATTATACACCTGGCGATGATCGTGAGGCTCAAAGTATCATCGAGCGCTTATCGCCGAGACTAGCACACGCAAACGCTGCTGTCGTCCTATCAACTGTTTAAGTCATTATGAAAATGTTGGAAATGGTTGATCCTGCTTCCGAAACT ]
[-] EMBL CD196138 [ TTNTG AGGGATTTGTTGTGTGACAGTAACCCNATGGTAGTCGCTAATGCTGTCGCATCAATAACTGAAATATTAGAGATGACAAATTCTGATTCTGCTAGGTCCCTACTCGCCTTCGACGGCCCAGTGATTAACAAACTCCTAACAGCTCTTAATGAATGCACTGAATGGGGGCAAGTTTTTATACTTGATGCGATTGCAGATTATACACCTGGCGATGATCGTGAGGCACAAAGTATCATCGAACGCGTATCGCCGAGACTAGCACACGCAAACGCTGCTGTCGTCCTATCAACTGTTA ]
[-] EMBL CD191302 [ CCTTCGACGGCCCAGTGATTAACAAACTCCTAACAGCTCTTAATGAATGCACTGAATGGGGGCAAGTTTTTATACTTGATGCGATTGCAGATTATGCACCTGGCGATGATCGTGAGGCACAAAGTATCATCGAACGCGTATCGCCGAGACTAGCACACGCAAACGCTGCTGTCGTCCTATCAACTGTTAAAGTCATTATGAAAATGTTGGAAATGGTTGATCCTGCTTCCGAAACTGCATCGACTGTGATTAGAAAGTTG ]
[+] EMBL CD139305 [ gCGCTGCTGTCGTCCTATCAACTGTTAAAGTCATTATGAAAATGTTGGAAATGGTTGATCCTGCTTCCGAAACTGCATCGACTGTGATTAGAAAGTTGGCGCCCCCACTAGTAACATTACTTTCTGCGGAACCGGAAATTCAGTATGTCGCTCTGCGCAATATTAACTTAATTGTTCAAAAGCGTAGAGATATTTTAAAGCAGGAGATAAAAGTATTTTTTGTCAAGTATAATGACCCGATCTATGTGAAACTTGAGAAACTAGATATAATGATACGTCTCATTAACCAGTCTAACATTGGTCAGGTGCTTGCTGAACTGAAGGAATACGCAAAAGAAGTTGACGTGGA]
consensusID : consensus_10607#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 260 fasta sequence
[TGTGTGACAGTAACCCTATGGTAGTCGCTATACTGTCGCATCAATAACTGAAATATTAGAGATGACAAATTCTGATTCTGCTAGGTCCCTACTCGCTTCGACGGCCCGGTGATTAACAAACTCCTAACAGCTCTTAATGAATGCACTGAATGGGGGCAAGTTTTTATACTTGATGCGATTGCAGATTACACACCTGGCGATGATCGTGAGGCACAAAGTATCATCGAACCGTATCACCGAGTCTAGCCAGTCCCGACGTT]
[-] EMBL CD196141 [TGTGTGACAGTAACCCTATGGTAGTCGCTATACTGTCGCATCAATAACTGAAATATTAGAGATGACAAATTCTGATTCTGCTAGGTCCCTACTCGCTTCGACGGCCCGGTGATTAACAAACTCCTAACAGCTCTTAATGAATGCACTGAATGGGGGCAAGTTTTTATACTTGATGCGATTGCAGATTACACACCTGGCGATGATCGTGAGGCACAAAGTATCATCGAACCGTATCACCGAGTCTAGCCAGTCCCGACGTT]
consensusID : consensus_10607#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 208 fasta sequence
[TAGCAAAGCTGCAAGATATAAATGCCCAGTTAGTGGAAGATAGAGGATTTTTAGAACTTTTGAGGGATTTGTTGAGAGGCAGTAGCCCCATGGTAGACGCTCAAGCTGTCGCATCAATAGCTGAAATATTAGAGATGACAAATTCTGATTCTGCTAGGTCCCTACTCGACTTCGACGGATCAGTGATTAACAAACTCCTAACAGCTCT]
[-] EMBL CD193742 [TAGCAAAGCTGCAAGATATAAATGCCCAGTTAGTGGAAGATAGAGGATTTTTAGAACTTTTGAGGGATTTGTTGAGAGGCAGTAGCCCCATGGTAGACGCTCAAGCTGTCGCATCAATAGCTGAAATATTAGAGATGACAAATTCTGATTCTGCTAGGTCCCTACTCGACTTCGACGGATCAGTGATTAACAAACTCCTAACAGCTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10607#0 TAGTTCCGATTGTCCGTAAAGTTCAGACATGCAAGGTGTTGCAGCATCTGTTACTGATAC 60
consensus_10607#2 ------------------------------------------------------------
consensus_10607#1 ------------------------------------------------------------
consensus_10607#0 TCTTGGAAATCTCAAACCATGGCTTCAGAAAGTAACAGCTCAATCCAAACCCACTGATGC 120
consensus_10607#2 ------------------------------------------------------------
consensus_10607#1 ------------------------------------------------------------
consensus_10607#0 TCGGTACTCCACGACAACGAAAAAAGGTGAAATTTTTGAGCTGAAAGCTGAATTGAATAG 180
consensus_10607#2 ------------------------------------------------------------
consensus_10607#1 ------------------------------------------------------------
consensus_10607#0 TGAGCGAAGAGAAAAAAAGAAGGAGGCTGTTAAAAAGGTCATAGCCAGTATGACTGTAGG 240
consensus_10607#2 ------------------------------------------------------------
consensus_10607#1 ------------------------------------------------------------
consensus_10607#0 TAAAGACGCTAGTGCTTTGTTTCCAGATGTAATCAACTGTATGCAAACAGACAATTTGGA 300
consensus_10607#2 ------------------------------------------------------------
consensus_10607#1 ------------------------------------------------------------
consensus_10607#0 ACTAAAAAAGCTAGTATACCTGTATCTTATGAATTATGCCAAAACACAGCCAGATACTGC 360
consensus_10607#2 ------------------------------------------------------------
consensus_10607#1 ------------------------------------------------------------
consensus_10607#0 AATAATGGCTGTGAATACCTTTGTAAAAGATTGCGATGATCCCAATCCACTTATCAGAGC 420
consensus_10607#2 ------------------------------------------------------------
consensus_10607#1 ------------------------------------------------------------
consensus_10607#0 GCTTGCTGTGCGAACAATGGGCTGCATACGTGTGGAGAAAATAACCGCCTATCTCTGTGA 480
consensus_10607#2 ------------------------------------------------------------
consensus_10607#1 ------------------------------------------------------------
consensus_10607#0 CCCACTCCGTAAATGTCTTAAAGACGAAGATCCGTATGTCCGCAAGACAGCTGCAGTTTG 540
consensus_10607#2 ------------------------------------------------------------
consensus_10607#1 ------------------------------------------------------------
consensus_10607#0 TGTAGCAAAGCTGCATGATATAGATGCTCAGTTAGTGGAAGATAGTGGATTTTTAGAACT 600
consensus_10607#2 --TAGCAAAGCTGCAAGATATAAATGCCCAGTTAGTGGAAGATAGAGGATTTTTAGAACT 58
consensus_10607#1 ------------------------------------------------------------
consensus_10607#0 TTTGAGGGATTTGTTGTGTGACAGTAACCCCATGGTAGTCGCTAATGCTGTCGCATCAAT 660
consensus_10607#2 TTTGAGGGATTTGTTGAGAGGCAGTAGCCCCATGGTAGACGCTCAAGCTGTCGCATCAAT 118
consensus_10607#1 --------------TGTGTGACAGTAACCCTATGGTAGTCGCT-ATACTGTCGCATCAAT 45
** * * ***** *** ******* **** * *************
consensus_10607#0 AACTGAAATATTAGAGATGACAAATTCTGATTCTGCTAGGTCCCTACTCGCCTTCGACGG 720
consensus_10607#2 AGCTGAAATATTAGAGATGACAAATTCTGATTCTGCTAGGTCCCTACTCGACTTCGACGG 178
consensus_10607#1 AACTGAAATATTAGAGATGACAAATTCTGATTCTGCTAGGTCCCTACTCG-CTTCGACGG 104
* ************************************************ *********
consensus_10607#0 CCCAGTGATTAACAAACTCCTAACAGCTCTTAATGAATGCACTGAATGGGGGCAAGTTTT 780
consensus_10607#2 ATCAGTGATTAACAAACTCCTAACAGCTCT------------------------------ 208
consensus_10607#1 CCCGGTGATTAACAAACTCCTAACAGCTCTTAATGAATGCACTGAATGGGGGCAAGTTTT 164
* **************************
consensus_10607#0 TATACTTGATGCGATTGCAGATTATACACCTGGCGATGATCGTGAGGCACAAAGTATCAT 840
consensus_10607#2 ------------------------------------------------------------
consensus_10607#1 TATACTTGATGCGATTGCAGATTACACACCTGGCGATGATCGTGAGGCACAAAGTATCAT 224
consensus_10607#0 CGAACGCGTATCGCCGAGACTAGCACACGCAAACGCTGCTGTCGTCCTATCAACTGTTAA 900
consensus_10607#2 ------------------------------------------------------------
consensus_10607#1 CGAACCGTATCACCGAGTCTAGCCAGTCCCGACGTT------------------------ 260
consensus_10607#0 AGTCATTATGAAAATGTTGGAAATGGTTGATCCTGCTTCCGAAACTGCATCGACTGTGAT 960
consensus_10607#2 ------------------------------------------------------------
consensus_10607#1 ------------------------------------------------------------
consensus_10607#0 TAGAAAGTTGGCGCCCCCACTAGTAACATTACTTTCTGCGGAACCGGAAATTCAGTATGT 1020
consensus_10607#2 ------------------------------------------------------------
consensus_10607#1 ------------------------------------------------------------
consensus_10607#0 CGCTCTGCGCAATATTAACTTAATTGTTCAAAAGCGTAGAGATATTTTAAAGCAGGAGAT 1080
consensus_10607#2 ------------------------------------------------------------
consensus_10607#1 ------------------------------------------------------------
consensus_10607#0 AAAAGTATTTTTTGTCAAGTATAATGACCCGATCTATGTGAAACTTGAGAAACTAGATAT 1140
consensus_10607#2 ------------------------------------------------------------
consensus_10607#1 ------------------------------------------------------------
consensus_10607#0 AATGATACGTCTCATTAACCAGTCTAACATTGGTCAGGTGCTTGCTGAACTGAAGGAATA 1200
consensus_10607#2 ------------------------------------------------------------
consensus_10607#1 ------------------------------------------------------------
consensus_10607#0 CGCAAAAGAAGTTGACGTGGA 1221
consensus_10607#2 ---------------------
consensus_10607#1 ---------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||