cluster # 10613

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 10613 cluster # 10613 Sequences # 19 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10613#0 length = 867 sequences # 10
consensus_10613#1 length = 755 sequences # 4

consensus_10613#2 length = 720 sequences # 3
consensus_10613#3 length = 381 sequences # 1
consensus_10613#4 length = 342 sequences # 1

consensusID : consensus_10613#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 867
fasta sequence

                              [CGTGATTTGTTGCATGTTATATAAATGGATATCCGACCAAATCATACGTTATATGTGAATAATTTAAATGACAAAGTAAAGAAAAACGATTTGAAAAAAGCACTATATTATATATTTGGTCAACATGGTCGACTAATTGATATTATAGCTATGAAAACAATGAAAATGCGTGGACAGGCATTTATTATTTATCAGGATATTGCTTGTGCAACGCAAGCTTATCGTTCATTACAAGGATTTCAATTATTTCAACGACCTATGCGAGTAACTTATGCTAAAAAAGATTCGCAACAGATTATCTGTTTGAAAGGTGTCAGTGCTGAAGTTCAAAAGAGACGTGAAGAAGAACGTGAAAAA-CGTAGACGAAAGAAAAT-GGCACAACGTGCTGCAGCTGCAGCAGC-GGCTTTACAAGCAGCTAATCAATCAGTAAATGGTCCAGCGGGTACCGGTGGAGATATCAATGCATTG-TTAGATCAACCAAATCATATTTTATTTGTTAGTAATTTACCAGAAG-AAACTACTGATGCTATGCTTACAATGTTATTTAGTCAATTCTCGGGATTCAAAGAGGCTAGACGTGCTGCTGGTGGAGTTGGCTTT-GTCGAATATGATACTGAATCACAAGCTGCTGCTGCGCGATCTGCTTATGAAGGGTTTAAACTGACACCGACTCATGCTATGCAAATCACATTTGCTAA-GAAATAAATATCACTTCTCTTTTTCTTAACCTCGTTCATTAGTTAATTGCTACTATTAATATTATTATTGTTACTATTCTGATGATTACCTGCTAACACCGCATATTGAGGTGGGCGGTGGTTATACATACATAATATATATCTCGACCACCTCAAAAAAAAAAAAAAA]

[+] EMBL CD079652             [CGTGATTTGTTGCATGTTATATAAATGGATATCCGACCAAATCATACGTTATATGTGAATAATTTAAATGACAAAGTAAAGAAAAACGATTTGAAAAAAGCACTATATTATATATTTGGTCAACATGGTCGACTAATTGATATTATAGCTATGAAAACAATGAAAATGCGTGGACAGGCATTTATTATTTATCAGGATATTGCTTGTGCAACGCAAGCTTATCGTTCATTACAAGGATTTCAATTATTTCAACGACCTATGCGAGTAACTTATGCTAAAAAAGATTCGCAACAGATTATCTGTTTGAAAGGTGTCAGTGCTGAAGTTCAAAAGAGACGTGAAGAAGAACGTGAAAAA CGTAGACGAAAGAAAAT GGCACAACGTGCTGCAGCTGCAGCAGC GGCTTTACAAGCAGCTAATCAATCAGTAAATGGTCCAGCGGGTACCGGTGGAGATATCAATGCATTG TTAGATCAACCAAATCATATTTTATTTGTTAGTAATTTACCAGAAG AAACTACTGATGCTATGCTTACAATGTTATTTAGTCAATTCTCGGGATTCAAAGAGGCTAGACGTGCTGCTGGTGGAGTTGGCTTT GTCGAATATGATACTGAATCACAAGCTGCTGCTGCGCGATCTGCTTATGAAGGGTTTAAACTGACACCGACTCATGCTATGCAAATCACATTTGCTAA GAAATAAATATCAC                                                                                                                                                           ]
[+] EMBL AI976300             [   GATTTGTTGCATGTTATATAAATGGATATCCGACCAAATCATACGTTATATGTGAATAATTTAAATGACAAAGTAAAGAAAAACGATTTGAAAAAAGCACTATATTATATATTTGGTCAACATGGTCGACTAATTGATATTATAGCTATGAAAACAATGAAAATGCGTGGACAGGCATTTATTATTTATCAGGATATTGCTTGTGCAACGCAAGCTTATCGTTCATTACAAGGATTTCAATTATTTCAACGACCTATGCGAGTAACTTATGCTAAAAAAGATTCGCAACAGATTATCTGTTTGAAAGGTGTCAGTGCTGAAGTTCAAAAGAGACGTGAAGAAGAACGTGAAAAA CGTACACGAAAGAAAAT GGCACAACGTGCTGCAGCTGCAGCAGC GGCTTTACAAGCAGCTAATCAATCAGTAAATGGTCCAGCGGGTACCGGTGGAGATATCAATGCATTG TTAGATCAACCAAATCATATTTTATTTGTTAGTAATTTACCAGAAG AAACTACTGATGC                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AI975036             [   GATTTGTTGCATGTTATATAAATGGATATCCGACCAAATCATACGTTATATGTGAATAATTTAAATGACAAAGTAAAGAAAAACGATTTGAAAAAAGCACTATATTATATATTTGGTCAACATGGTCGACTAATTGATATTATAGCTATGAAAACAATGAAAATGCGTGGACAGGCATTTATTATTTATCAGGATATTGCTTGTGCAACGCAAGCTTATCGTTCATTACAAGGATTTCAATTATTTCAACGACCTATGCGAGTAACTTATGCTAAAAAAGATTCGCAACAGATTATCTGTTTGAAAGGTGTCAGTGCTGAAGTTCAAAAGAGACGTGAAGAAGAACGTGAAAAA CGTAGACGAAAGAAAAT GGCACAACGTGCTGCAGCTGCAGCAGC GGCTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD140063             [             ATGTTATATAAATGGATATCCGACCAAATCATACGTTATATGTGAATAATTTAAATGACAAAGTAAAGAAAAACGATTTGAAAAAAGCACTATATTATATATTTGGTCAACATGGTCGACTAATTGATATTATAGCTATGAAAACAATGAAAATGCGTGGACAGGCATTTATTATTTATCAGGATATTGCTTGTGCAACGCAAGCTTATCGTTCATTACAAGGATTTCAATTATTTCAACGACCTATGCGAGTAACTTATGCTAAAAAAGATTCGCAACAGATTATCTGTTTGAAAGGTGTCAGTGCTGAAGTTCAAAAGAGACGTGAAGAAGAACGTGAAAAA CGTAGACGAAAGAAAAT GGCACAACGTGCTGCAGCTGCAGCAGC GGCTTTACAAGCAGCTAATCAATCAGTAAATGGTCCAGCGGGTACCGGTGGAGAT                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL SMT14460             [                                                                                          TTGAAAAAAGCACTATATTATATATTNGGNCAACATGGTCGACTAATTGATATTATAGCTATGAAAACAATGAAAATNCGTGGNCAGGCATTTNTTATTTATCAGGATATTGCTTGTGC ACGCAAGCTTATCGTTCATTACAAGGATTTCAATTATTTCAACGACCTATGCGAGTAACTTATGCTAAAAAAGATTCGCAACAGATTATCTGTTTGAAAGGTGTCAGTGCTGAAGTTCAAAAGAGACGTGAAGAAGAACGTGAAAAA CGTAGACGAAAGAAAAT GGCACAACGTCTTGCAGCTGCANAGGCGGGCTTTACAAGCAGCTAATCANTCAGTAAATGGTCCAGCGGGTACCCGTGGAGATATCAATGCAT                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD084036             [                                                                                                                                                                                                              TGCAACGCAAGCTTATCGTTCATTACAAGGATTTCAATTATTTCAACGACCTATGCGAGT ACTTATGCTAAAAAAGATTCGCAACAGATTATCTGTTTGAAAGGTGTCAGTGCTGAAGTTCAAAAGAGACGTGAAGAAGAACGTGAAAAA CGTAGACGAAAGAAAAT GGCACAACGTGCTGCAGCTGCAGCAGC GGCTTTACAAGCAGCTAATCAATCAGTAAATGGTCCAGCGGGTACCGGTGGAGATATCAATGCATTG TTAGATCAACCAAATCATATTTTATTTGTTAGTAATTTACCAGAAG AAACTACTGATGCTATGCTTACAATGTTATTTAGTCAATTCTCGGGATTCAAAGAGGCTAGACGTGCTG                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD137109             [                                                                                                                                                                                                                                                                         TAACTTATGCTAAAAAAGATTCGCAACAGATTATCTGTTTGAAAGGTGTCAGTGCTGAAGTTCGAAAGAGACGTGAAGAAGAACGTGAAAAA CGTAGACGAAAGAAAAT GGCACAACGTGCTGCAGCTGCAGCAGC GGCTTTACAAGCAGCTAATCAATCAGTAAATGGTCCAGCGGGTACCGGTGGAGATATCAATGCATTG TTAGATCAACCAAATCATATTTTATTTGTTAGTAATTTACCAGAAG AAACTACTGATGCTATGCTTACAATGTTATTTAGTCAATTCTCGGGATTCAAAGAGGCTAGACGTGCTGCTGGTGGAGTTGGCTTT GTCGAATATGATACTGAATCACAAGCTGCTGCTGC                                                                                                                                                                                                                                         ]
[-] EMBL SMT14459             [                                                                                                                                                                                                                                                                                                                     GGTGTCAGTGCTGAAGTTCAAAAGAGNCGTGNAGAAGACCGTGAAAAACCGTAGACGAAANAAAATGGGCACNACGTGCTGCAGCTGCAGCAGC GGCTTTACAAGCAGCTAATCAATCAGTAAATGGTCCAGCGGGTACCGGTGGAGATATCAATGCATTG TTAGATCAACCAAATCATATTTTATTTGTTAGTAATTTACCAGNAG AAACTACTGATGCTATGCTTACAATGTTATTTAGTCAATTCTCGGGATTNAAAGAGGCTAGACGTGCTGCTGGTGGAGTTGGCTTT GTCGAATATGATACTGAATNACAAGCTGCT NTGCGCGATCTGCTTATGAAGGGTTTAAACTGACACCGACTCATGCTATGCNAATCACATTTGCTNA GAAATNAATATCACTTCT                                                                                                                                                       ]
[+] EMBL SM642                [                                                                                                                                                                                                                                                                                                                                                                                                                                                 ATGGTCCAGNGGGTACCGGTGGAGATATCAATGNATTGNTTAGATCAACCAANTCATATTTTATTTGTTAGTAATTTACCAGAAGNAAACTACTGATGCTATGCTTACAATGTTATTTAGNCANTTCTCGGGATTCAAAGAGGCTAGACGTGCTGNTGGTGGAGTTGGCTTTGGTCGAATATGATACTGAATCACAAGCTGCTGCTGCGCGATCTGCTTATGAAGGGTTTANACTGACACCGACTCATGCTATGCAAATCACATTTGCTAAGGAAATANATATCACT                                                                                                                                                          ]
[-] EMBL AI395574             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AAG AAA TACTGATGCTATGCTTACAATGTTATTTAGTCAATTCTCGGGATTCAAAGAGGCTAGACGTGCTGCTGGTGGAGTTGGCTTT GTCGAATATGATACTGAATCACAAGCTGCTGCTGCGCGATCTGCTTATGAAGGGTTTAAACTGACACCGACTCATGCTATGCAAATCACATTTGCTAA GAAATAAATATCACTTCTCTTTTTCTTAACCTCGTTCATTAGTTAATTGCTACTATTAATATTATTATTGTTACTATTCTGATGATTACCTGCTAACACCGCATATTGAGGTGGGCGGTGGTTATACATACATAATATATATCTCGACCACCTCAAAAAAAAAAAAAAA]




>consensus_10613#0
CGTGATTTGTTGCATGTTATATAAATGGATATCCGACCAAATCATACGTTATATGTGAAT
AATTTAAATGACAAAGTAAAGAAAAACGATTTGAAAAAAGCACTATATTATATATTTGGT
CAACATGGTCGACTAATTGATATTATAGCTATGAAAACAATGAAAATGCGTGGACAGGCA
TTTATTATTTATCAGGATATTGCTTGTGCAACGCAAGCTTATCGTTCATTACAAGGATTT
CAATTATTTCAACGACCTATGCGAGTAACTTATGCTAAAAAAGATTCGCAACAGATTATC
TGTTTGAAAGGTGTCAGTGCTGAAGTTCAAAAGAGACGTGAAGAAGAACGTGAAAAACGT
AGACGAAAGAAAATGGCACAACGTGCTGCAGCTGCAGCAGCGGCTTTACAAGCAGCTAAT
CAATCAGTAAATGGTCCAGCGGGTACCGGTGGAGATATCAATGCATTGTTAGATCAACCA
AATCATATTTTATTTGTTAGTAATTTACCAGAAGAAACTACTGATGCTATGCTTACAATG
TTATTTAGTCAATTCTCGGGATTCAAAGAGGCTAGACGTGCTGCTGGTGGAGTTGGCTTT
GTCGAATATGATACTGAATCACAAGCTGCTGCTGCGCGATCTGCTTATGAAGGGTTTAAA
CTGACACCGACTCATGCTATGCAAATCACATTTGCTAAGAAATAAATATCACTTCTCTTT
TTCTTAACCTCGTTCATTAGTTAATTGCTACTATTAATATTATTATTGTTACTATTCTGA
TGATTACCTGCTAACACCGCATATTGAGGTGGGCGGTGGTTATACATACATAATATATAT
CTCGACCACCTCAAAAAAAAAAAAAAA

consensusID : consensus_10613#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 755
fasta sequence

                              [CTCGAGGCCAAAAATTCGGCACGAGGTGTTATATAAATGGATATCCGACCAAATCATACGTTAT-ATGTGAATAATTTAAATGACAAAGTAAAGAAAAACGATTTGAAAAAAGCACTATATTATATATTTGGTCAACATGGTCGACTAATTGATATTATAGCTATGAAAACAATGAAAATGCGTGGACAGGCATTTATTATTTATCAGGATATTGCTTGTGCAACGCAAGCTTATCGTTCATTACAAGGATTTCAATTATTTCAACGACCTATGCGAGTAACTTATGCTAAAAAAGATTCGCAACAGATTATCTGTTTGAAAGGTGTCAGTGCTGAAGTTCAAAAGAGACGTGAAGAAGAACGTGAAAAACGTAGACG-AA-AGAAAATGGCACAACGTGCTGCAGCTGCAGCAGCGGCTTTACAAGCAGCTAATCAATCAGTAAATGGTCCAGCGGGTACCGGTGGAGATATCAATGCATTGTTAGATCAACCAAATCATATTTTATTTGTTAGTAATTTACCAGAAGAAACTACTGATGCTATGCTTACAATGTTATTTAGTCAATTCTCGGGATTCAAAGAGGCTAGACGTGCTGCTGGTGGAGTTGGCTTTGTCGAATATGATACTGAATCACAAGCTGCTGCTGCGCGATCTGCTTATGAAGGGTTTAAACTGACACCGACTCATGCTATGCAAATCACATTTGCTAAGAAATAAATATCACTTCTCTTTTTCTTA--NN-ANAAAAAAAAAAAAA]

[+] EMBL CD079407             [CTCGAGGCCAAAAATTCGGCACGAGGTGTTATATAAATGGATATCCGACCAAATCATACGTTAT ATGTGAATAATTTAAATGACAAAGTAAAGAAAAACGATTTGAAAAAAGCACTATATTATATATTTGGTCAACATGGTCGACTAATTGATATTATAGCTATGAAAACAATGAAAATGCGTGGACAGGCATTTATTATTTATCAGGATATTGCTTGTGCAACGCAAGCTTATCGTTCATTACAAGGATTTCAATTATTTCAACGACCTATGCGAGTAACTTATGCTAAAAAAGATTCGCAACAGATTATCTGTTTGAAAGGTGTCAGTGCTGAAGTTCAAAAGAGACGTGAAGAAGAACGTGAAAAACGTAGACG AA AGAAAATGGCACAACGTGCTGCAGCTGCAGCAGCGGCTTTACAAGCAGCTAATCAATCAGTAAATGGTCCAGCGGGTACCGGTGGAGATATCAATGCATTGTTAGATCAACCAAATCATATTTTATTTGTTAGTAATTTACCAGAAGAAACTACTGATGCTATGCTTACAATGTTATTTAGTCAATTCTCGGGATTCAAAGAGGCTAGACGTGCTGCTGGTGGAGTTGGCTTTGTCGAATATGATACTGAATCACAAGCTGCTGCTGCGCGATCTGCTTATGAAGGGTTTAAACTGACACCGACTCATGCTATGCAAATCACATTTGCTAAAAAATAAATATCACTTCTC                             ]
[-] EMBL AI394764             [                                             CGACCAATTCATACGTTATAATGTGAATAATTTAAATGACAAAGTAAAGAAAAACGATTTGAAAAGGCCACTATATTATATATTTGTTCAACATGGTCGACTAATTGATATTTTAGCTATGAAAACAATGAAAATGCGTGGACAGGCATTTATTATTTATCAGGATATTGCTTGTGCAACGCAGGCTTTTCTTTCATAACAAGGATTTCATTTATTTCAACAACCTATGGGGTTAACTTATGTTAAAAAAGATTCCCAACAGATTATCTGTTTGAAAGGTGTCAGTGCTGAAGTTCAAAAGAGACGTGAAGAGGAACGTGAAAAACGTAGACG AA GGAAAATGGCACAACGTGCTGCAGTTGCAGCAGCGGCTTTACAAGCAGCTAATCAATCAGTAAATGGTCCAGCGGGTACCGGTGGAGATATCAATGCATTGTTAGATCAACCAAATCATATTTTATTTGTTAGTAATTTACCAGAAGAAACTACTGATGCTATGCTTACAATGTTATTTAGTCAATTCTCGGGATTCAAAGAGGCTAGACGTGCTGCTGGTGGAGTTGGCTTTGTCGAATATGATACTGAATCACAAGCTGCTGCTGCGCGATCTGCTTATGAAGGGTTTAAACTGACACCGACTCATGCTATGCAAATCACATTTGCTAAGAAATAAATATCATTTCTCTTTTTCTTT  NN ANAAANAAAAAAAA ]
[-] EMBL AI395619             [                                                                                                                                                                                                                                                                                                                                          tctgGAAGTCCAAAAGAGACGTGAGGAAGAACGTGAAAAACGTAGACGNAA AGAAAATGGCACAACGTGCTGCAGCTGCAGCAGCGGCTTTACAAGCAGCTAATCAATCAGTAAATGGTCCAGCGGGTACCGGTGGAGATATCAATGCATTGTTCGATCAACCAAATCATATTTTATTTGTTCGTAATTTACCAGAAGAAACTACTGATGCTATGCTTACAATGTTATTTAGTCAATTCTCGGGATTCAAAGAGGCTAGACGTGCTGCTGGTGGAGTTGGCTTTGTCGAATATGATACTGAATCACAAGCTGCTGCTGCGCGATCTGCTTATGAAGGGTTTAAACTGACACCGACTCATGCTATGCAAATCACATTTGCTAAGCAATAAATATCAGATCTCTTTTTCTTACGNNTATGTAAAAAAAAAAA]
[-] EMBL AI394872             [                                                                                                                                                                                                                                                                                                                                                           GACGTGANGAAGAACGTGAAAAACGTAGACG AANAGAAAATGGCACAACGTGCTGCAGCTGCAGCAGCGGCTTTACAAGCAGCTAATCAATCAGTAAATGGTCCAGCGGGTACCGGTGGAGATATCAATGCATTGTTAGATCAACCAAATCATATTTTATTTGTTAGTAATTTACCAGAAGAAACTACTGATGCTATGCTTACAATGTTATTTAGTCAATTCTCGGGATTCAAAGAGGCTAGACGTGCTGCTGGTGGAGTTGGCTTTGTCGAATATGATACTGAATCACAAGCTGCTGCTGCGCGATCTGCTTATGAAGGGTTTAAACTGACACCGACTCATGCTATGCAAATCACATTTGCTAAGAAATAAATATCACTTCTCTTTTTCTAA  AA AAAAAAAAAAAAAA ]




>consensus_10613#1
CTCGAGGCCAAAAATTCGGCACGAGGTGTTATATAAATGGATATCCGACCAAATCATACG
TTATATGTGAATAATTTAAATGACAAAGTAAAGAAAAACGATTTGAAAAAAGCACTATAT
TATATATTTGGTCAACATGGTCGACTAATTGATATTATAGCTATGAAAACAATGAAAATG
CGTGGACAGGCATTTATTATTTATCAGGATATTGCTTGTGCAACGCAAGCTTATCGTTCA
TTACAAGGATTTCAATTATTTCAACGACCTATGCGAGTAACTTATGCTAAAAAAGATTCG
CAACAGATTATCTGTTTGAAAGGTGTCAGTGCTGAAGTTCAAAAGAGACGTGAAGAAGAA
CGTGAAAAACGTAGACGAAAGAAAATGGCACAACGTGCTGCAGCTGCAGCAGCGGCTTTA
CAAGCAGCTAATCAATCAGTAAATGGTCCAGCGGGTACCGGTGGAGATATCAATGCATTG
TTAGATCAACCAAATCATATTTTATTTGTTAGTAATTTACCAGAAGAAACTACTGATGCT
ATGCTTACAATGTTATTTAGTCAATTCTCGGGATTCAAAGAGGCTAGACGTGCTGCTGGT
GGAGTTGGCTTTGTCGAATATGATACTGAATCACAAGCTGCTGCTGCGCGATCTGCTTAT
GAAGGGTTTAAACTGACACCGACTCATGCTATGCAAATCACATTTGCTAAGAAATAAATA
TCACTTCTCTTTTTCTTANNANAAAAAAAAAAAAA

consensusID : consensus_10613#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 720
fasta sequence

                              [TGATGTTCACACTGACTCAAACTCTGTACTTTTCTCTTCGAGTGCTTATCATTTTATCCATTGAGCTACCAAGTCCAGTGATCCACTAGAGTATTCATCAGCCTATGCGAGTAACTTATGCTAAAAAAGATTCGCAACAGATTATCTGTTTGAAAGGTGTCAGTGCTGAAGTTCAAAAGAGACGTGAAGAAGAACGTGAAAAACGTAGACGAAAGAAAATGGCACAACGTGCTGCAGCTGCAGCAGCGGCTTTACAAGCAGCTAATCAATCAGTAAATGGTCCAGCGGGTACCGGTGGAGATATCAATGCATTGTTAGATCAACCAAATCATATTTTATTTGTTAGTAATTTACCCGAAGAAACTACTGATGCTATGCTTCCAATGTTATTTAGTCAATTCTCGGGATTCAAAAAGGCTAAACGTGCTGCTGGTGGAGTTGGCTTTGTCGAATATGATACTGAATCCCAAGCTGCTGCTGCGCGATTTGGTTATGAAGGGTTTAAACTGACCCCGACTCCTGCTATGCAAATCCCCTTTGGTAAAAAATAAAAATGCCTTTTCTTTTTTTTACCCTCGTTCATTAGTTAATTGCTACTATTAATATTATTATTGTTACTATTCTGATGATTCCCTGCTAACCCCGCATATTAAGGTGGGCGGTGGTTATACATACATAATATATATTTCGCCCCCATCCCTTGATGAAGATGTAATAATC]

[-] EMBL CD140325             [TGATGTTCACACTGACTCAAACTCTGTACTTTTCTCTTCGAGTGCTTATCATTTTATCCATTGAGCTACCAAGTCCAGTGATCCACTAGAGTATTCATCAGCCTATGCGAGTAACTTATGCTAAAAAAGATTCGCAACAGATTATCTGTTTGAAAGGTGTCAGTGCTGAAGTTCAAAAGAGACGTGAAGAAGAACGTGAAAAACGTAGACGAAAGAAAATGGCACAACGTGCTGCAGCTGCAGCAGCGGCTTTACAAGCAGCTAATCAATCAGTAAATGGTCCAGCGGGTACCGGTGGAGATATCAATGCATTGTTAGATCAACCAAATCATATTTTATTTGTTA                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD073680             [                                                                                                                                 ATTCGCCCCAGATTATTTGTTTTAAAGGGGTCAGTGCTGAAGTTCAAAAAAAACGTGAAAAAGAACGTGAAAAACGTAGACGAAAAAAAATGGCCCAACGTGCTGCAGCTGCAGCAGCGGCTTTTCAAGCAGGTAATCAATCAGTAAATGGTCCACCGGGGACCGGTGGAGATATCAATGCCTTGTTAGATCAACCCAATCATATTTTATTTGTTAGTAATTTACCCGAAGAAACTACTGATGCTATGCTTCCAATGTTATTTAGTCAATTCTCGGGATTCAAAAAGGCTAAACGTGCTGCTGGTGGAGTTGGCTTTGTCGAATATGATACTGAATCCCAAGCTGCTGCTGCGCGATTTGGTTATGAAGGGTTTAAACTGACCCCGACTCCTGCTATGCAAATCCCCTTTGGTAAAAAATAAAAATGCCTTTT                                                                                                                                                              ]
[-] EMBL CD073914             [                                                                                                                                                                                                                                                             ACAAGCAGTTAATCAATCAGTAAATGGTCCAGCGGGTACCGGTGGAGATATCAATGCATTGTTAGATCAACCAAATCATATTTTATTTGTTAGTAATTTACCAGAAGAAACTACTGATGCTATGCTTCCAATGTTATTTAGTCAATTCTCGGGATTCAAAAAGGCTAAACGTGCTGCTGGTGAAGTTGGCTTTGTCAAATATGATACTGAATCCCAAGCTGTTGTTGCGCGATTTGTTTATAAAGGGTTTAAACTGACCCCGACTCATGTTATGCAAATCCCATTTGTTAAAAAATAAATATCACTTCTCTTTTTTTTACCCTCGTTCATTAGTTAATTGCTACTATTAATATTATTATTGTTACTATTCTGATGATTCCCTGCTAACCCCGCATATTAAGGTGGGCGGTGGTTATACATACATAATATATATTTCGCCCCCATCCCTTGATGAAGATGTAATAATC]




>consensus_10613#2
TGATGTTCACACTGACTCAAACTCTGTACTTTTCTCTTCGAGTGCTTATCATTTTATCCA
TTGAGCTACCAAGTCCAGTGATCCACTAGAGTATTCATCAGCCTATGCGAGTAACTTATG
CTAAAAAAGATTCGCAACAGATTATCTGTTTGAAAGGTGTCAGTGCTGAAGTTCAAAAGA
GACGTGAAGAAGAACGTGAAAAACGTAGACGAAAGAAAATGGCACAACGTGCTGCAGCTG
CAGCAGCGGCTTTACAAGCAGCTAATCAATCAGTAAATGGTCCAGCGGGTACCGGTGGAG
ATATCAATGCATTGTTAGATCAACCAAATCATATTTTATTTGTTAGTAATTTACCCGAAG
AAACTACTGATGCTATGCTTCCAATGTTATTTAGTCAATTCTCGGGATTCAAAAAGGCTA
AACGTGCTGCTGGTGGAGTTGGCTTTGTCGAATATGATACTGAATCCCAAGCTGCTGCTG
CGCGATTTGGTTATGAAGGGTTTAAACTGACCCCGACTCCTGCTATGCAAATCCCCTTTG
GTAAAAAATAAAAATGCCTTTTCTTTTTTTTACCCTCGTTCATTAGTTAATTGCTACTAT
TAATATTATTATTGTTACTATTCTGATGATTCCCTGCTAACCCCGCATATTAAGGTGGGC
GGTGGTTATACATACATAATATATATTTCGCCCCCATCCCTTGATGAAGATGTAATAATC

consensusID : consensus_10613#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 381
fasta sequence

                              [AATGTTATTTAGTCAATTCTCGGGATTCAAAGAGCCTAGACGTGCTGCTGGTGGAGTTGGCTTTGTCGAATATGATACTGAATCACAAGCTGCTACTGCGCGATTTGCTTATGAAGGGTTTAAACTGACACCGACTCATGCTCTGCAAATCACATTTGCTAAGAAATAAATACCACTTCTCTTTTTCTTAACCTCGATCATTAGTTAATTGCTACTATTAATATTATTATTGCTACTATTCTGATGATTACCTGCTAACACCGCATATTGAGGTGGGCGGTGGTTATACAGACATAATATATATCTCGACCACATCACTTGATGAAGATTAATAATCATATCAACGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL AI395840             [AATGTTATTTAGTCAATTCTCGGGATTCAAAGAGCCTAGACGTGCTGCTGGTGGAGTTGGCTTTGTCGAATATGATACTGAATCACAAGCTGCTACTGCGCGATTTGCTTATGAAGGGTTTAAACTGACACCGACTCATGCTCTGCAAATCACATTTGCTAAGAAATAAATACCACTTCTCTTTTTCTTAACCTCGATCATTAGTTAATTGCTACTATTAATATTATTATTGCTACTATTCTGATGATTACCTGCTAACACCGCATATTGAGGTGGGCGGTGGTTATACAGACATAATATATATCTCGACCACATCACTTGATGAAGATTAATAATCATATCAACGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_10613#3
AATGTTATTTAGTCAATTCTCGGGATTCAAAGAGCCTAGACGTGCTGCTGGTGGAGTTGG
CTTTGTCGAATATGATACTGAATCACAAGCTGCTACTGCGCGATTTGCTTATGAAGGGTT
TAAACTGACACCGACTCATGCTCTGCAAATCACATTTGCTAAGAAATAAATACCACTTCT
CTTTTTCTTAACCTCGATCATTAGTTAATTGCTACTATTAATATTATTATTGCTACTATT
CTGATGATTACCTGCTAACACCGCATATTGAGGTGGGCGGTGGTTATACAGACATAATAT
ATATCTCGACCACATCACTTGATGAAGATTAATAATCATATCAACGGCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_10613#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 342
fasta sequence

                              [CCCACGGGTACCCGTTGGGATATCCATGCATTGTTGGATCACCCAAATCGTATTTTATTTGTTAGTAATTTACCCGAAGAAACTACTGATGCTATGCTTACAATGTTATTTAGGCAATTCTCGGGATCCAAAGAGGCTAGACGTGCTGCTGGTGGAGTTGGCTTTGTCGAATATGATACTGAATCCCAAGCTGCTGCTGCGCGATCTGCTTTTGAAGGGTTTAAACTGACCCCGACTCATGCTATGCAAATCACATTTGCTAAGAAATAAATATCACTTCTCTTTTTCTTAAAAAGACAGACCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL AI394893             [CCCACGGGTACCCGTTGGGATATCCATGCATTGTTGGATCACCCAAATCGTATTTTATTTGTTAGTAATTTACCCGAAGAAACTACTGATGCTATGCTTACAATGTTATTTAGGCAATTCTCGGGATCCAAAGAGGCTAGACGTGCTGCTGGTGGAGTTGGCTTTGTCGAATATGATACTGAATCCCAAGCTGCTGCTGCGCGATCTGCTTTTGAAGGGTTTAAACTGACCCCGACTCATGCTATGCAAATCACATTTGCTAAGAAATAAATATCACTTCTCTTTTTCTTAAAAAGACAGACCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_10613#4
CCCACGGGTACCCGTTGGGATATCCATGCATTGTTGGATCACCCAAATCGTATTTTATTT
GTTAGTAATTTACCCGAAGAAACTACTGATGCTATGCTTACAATGTTATTTAGGCAATTC
TCGGGATCCAAAGAGGCTAGACGTGCTGCTGGTGGAGTTGGCTTTGTCGAATATGATACT
GAATCCCAAGCTGCTGCTGCGCGATCTGCTTTTGAAGGGTTTAAACTGACCCCGACTCAT
GCTATGCAAATCACATTTGCTAAGAAATAAATATCACTTCTCTTTTTCTTAAAAAGACAG
ACCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10613#1      CTCGAGGCCAAAAATTCGGCACGAGGTGTTATATAAATGGATATCCGACCAAATCATACG 60
consensus_10613#4      ------------------------------------------------------------
consensus_10613#0      ------------CGTGATTTGTTGCATGTTATATAAATGGATATCCGACCAAATCATACG 48
consensus_10613#2      ------------------------------------------------------------
consensus_10613#3      ------------------------------------------------------------
                                                                                   

consensus_10613#1      TTATATGTGAATAATTTAAATGACAAAGTAAAGAAAAACGATTTGAAAAAAGCACTATAT 120
consensus_10613#4      ------------------------------------------------------------
consensus_10613#0      TTATATGTGAATAATTTAAATGACAAAGTAAAGAAAAACGATTTGAAAAAAGCACTATAT 108
consensus_10613#2      ------------------------------------------------------------
consensus_10613#3      ------------------------------------------------------------
                                                                                   

consensus_10613#1      TATATATTTGGTCAACATGGTCGACTAATTGATATTATAGCTATGAAAACAATGAAAATG 180
consensus_10613#4      ------------------------------------------------------------
consensus_10613#0      TATATATTTGGTCAACATGGTCGACTAATTGATATTATAGCTATGAAAACAATGAAAATG 168
consensus_10613#2      ----------------------------------------------TGATGTTCACACTG 14
consensus_10613#3      ------------------------------------------------------------
                                                                                   

consensus_10613#1      CGTGGACAGGCATTTATTATTTATCAGGATATTGCTTGTGCAACGCAAGCTTATCGTTCA 240
consensus_10613#4      ------------------------------------------------------------
consensus_10613#0      CGTGGACAGGCATTTATTATTTATCAGGATATTGCTTGTGCAACGCAAGCTTATCGTTCA 228
consensus_10613#2      ACTCAAACTCTGTACTTTTCTCTTCGAGTGCTTATCATTTTATCCATTGAGCTACCAAGT 74
consensus_10613#3      ------------------------------------------------------------
                                                                                   

consensus_10613#1      TTACAAGGATTTCAATTATTTCAACGACCTATGCGAGTAACTTATGCTAAAAAAGATTCG 300
consensus_10613#4      ------------------------------------------------------------
consensus_10613#0      TTACAAGGATTTCAATTATTTCAACGACCTATGCGAGTAACTTATGCTAAAAAAGATTCG 288
consensus_10613#2      CCAGTGATCCACTAGAGTATTCATCAGCCTATGCGAGTAACTTATGCTAAAAAAGATTCG 134
consensus_10613#3      ------------------------------------------------------------
                                                                                   

consensus_10613#1      CAACAGATTATCTGTTTGAAAGGTGTCAGTGCTGAAGTTCAAAAGAGACGTGAAGAAGAA 360
consensus_10613#4      ------------------------------------------------------------
consensus_10613#0      CAACAGATTATCTGTTTGAAAGGTGTCAGTGCTGAAGTTCAAAAGAGACGTGAAGAAGAA 348
consensus_10613#2      CAACAGATTATCTGTTTGAAAGGTGTCAGTGCTGAAGTTCAAAAGAGACGTGAAGAAGAA 194
consensus_10613#3      ------------------------------------------------------------
                                                                                   

consensus_10613#1      CGTGAAAAACGTAGACGAAAGAAAATGGCACAACGTGCTGCAGCTGCAGCAGCGGCTTTA 420
consensus_10613#4      ------------------------------------------------------------
consensus_10613#0      CGTGAAAAACGTAGACGAAAGAAAATGGCACAACGTGCTGCAGCTGCAGCAGCGGCTTTA 408
consensus_10613#2      CGTGAAAAACGTAGACGAAAGAAAATGGCACAACGTGCTGCAGCTGCAGCAGCGGCTTTA 254
consensus_10613#3      ------------------------------------------------------------
                                                                                   

consensus_10613#1      CAAGCAGCTAATCAATCAGTAAATGGTCCAGCGGGTACCGGTGGAGATATCAATGCATTG 480
consensus_10613#4      ---------------------------CCCACGGGTACCCGTTGGGATATCCATGCATTG 33
consensus_10613#0      CAAGCAGCTAATCAATCAGTAAATGGTCCAGCGGGTACCGGTGGAGATATCAATGCATTG 468
consensus_10613#2      CAAGCAGCTAATCAATCAGTAAATGGTCCAGCGGGTACCGGTGGAGATATCAATGCATTG 314
consensus_10613#3      ------------------------------------------------------------
                                                                                   

consensus_10613#1      TTAGATCAACCAAATCATATTTTATTTGTTAGTAATTTACCAGAAGAAACTACTGATGCT 540
consensus_10613#4      TTGGATCACCCAAATCGTATTTTATTTGTTAGTAATTTACCCGAAGAAACTACTGATGCT 93
consensus_10613#0      TTAGATCAACCAAATCATATTTTATTTGTTAGTAATTTACCAGAAGAAACTACTGATGCT 528
consensus_10613#2      TTAGATCAACCAAATCATATTTTATTTGTTAGTAATTTACCCGAAGAAACTACTGATGCT 374
consensus_10613#3      ------------------------------------------------------------
                                                                                   

consensus_10613#1      ATGCTTACAATGTTATTTAGTCAATTCTCGGGATTCAAAGAGGCTAGACGTGCTGCTGGT 600
consensus_10613#4      ATGCTTACAATGTTATTTAGGCAATTCTCGGGATCCAAAGAGGCTAGACGTGCTGCTGGT 153
consensus_10613#0      ATGCTTACAATGTTATTTAGTCAATTCTCGGGATTCAAAGAGGCTAGACGTGCTGCTGGT 588
consensus_10613#2      ATGCTTCCAATGTTATTTAGTCAATTCTCGGGATTCAAAAAGGCTAAACGTGCTGCTGGT 434
consensus_10613#3      --------AATGTTATTTAGTCAATTCTCGGGATTCAAAGAGCCTAGACGTGCTGCTGGT 52
                               ************ ************* **** ** *** *************

consensus_10613#1      GGAGTTGGCTTTGTCGAATATGATACTGAATCACAAGCTGCTGCTGCGCGATCTGCTTAT 660
consensus_10613#4      GGAGTTGGCTTTGTCGAATATGATACTGAATCCCAAGCTGCTGCTGCGCGATCTGCTTTT 213
consensus_10613#0      GGAGTTGGCTTTGTCGAATATGATACTGAATCACAAGCTGCTGCTGCGCGATCTGCTTAT 648
consensus_10613#2      GGAGTTGGCTTTGTCGAATATGATACTGAATCCCAAGCTGCTGCTGCGCGATTTGGTTAT 494
consensus_10613#3      GGAGTTGGCTTTGTCGAATATGATACTGAATCACAAGCTGCTACTGCGCGATTTGCTTAT 112
                       ******************************** ********* ********* ** ** *

consensus_10613#1      GAAGGGTTTAAACTGACACCGACTCATGCTATGCAAATCACATTTGCTAAGAAATAAATA 720
consensus_10613#4      GAAGGGTTTAAACTGACCCCGACTCATGCTATGCAAATCACATTTGCTAAGAAATAAATA 273
consensus_10613#0      GAAGGGTTTAAACTGACACCGACTCATGCTATGCAAATCACATTTGCTAAGAAATAAATA 708
consensus_10613#2      GAAGGGTTTAAACTGACCCCGACTCCTGCTATGCAAATCCCCTTTGGTAAAAAATAAAAA 554
consensus_10613#3      GAAGGGTTTAAACTGACACCGACTCATGCTCTGCAAATCACATTTGCTAAGAAATAAATA 172
                       ***************** ******* **** ******** * **** *** ******* *

consensus_10613#1      TCACTTCTCTTTTTCTTANNANAA--------AAAAAAAAAAA----------------- 755
consensus_10613#4      TCACTTCTCTTTTTCTTAAAAAGACAGACCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA 333
consensus_10613#0      TCACTTCTCTTTTTCTTAACCTCGTTCATTAGTTAATTGCTACTATTAATATTATTATTG 768
consensus_10613#2      TGCCTTTTCTTTTTTTTACCCTCGTTCATTAGTTAATTGCTACTATTAATATTATTATTG 614
consensus_10613#3      CCACTTCTCTTTTTCTTAACCTCGATCATTAGTTAATTGCTACTATTAATATTATTATTG 232
                          *** ******* ***                **     *                  

consensus_10613#1      ------------------------------------------------------------
consensus_10613#4      AAAAAAAAA--------------------------------------------------- 342
consensus_10613#0      TTACTATTCTGATGATTACCTGCTAACACCGCATATTGAGGTGGGCGGTGGTTATACATA 828
consensus_10613#2      TTACTATTCTGATGATTCCCTGCTAACCCCGCATATTAAGGTGGGCGGTGGTTATACATA 674
consensus_10613#3      CTACTATTCTGATGATTACCTGCTAACACCGCATATTGAGGTGGGCGGTGGTTATACAGA 292
                                                                                   

consensus_10613#1      ------------------------------------------------------------
consensus_10613#4      ------------------------------------------------------------
consensus_10613#0      CATAATATATATCTCGACCACCTCAAAAAAAAAAAAAAA--------------------- 867
consensus_10613#2      CATAATATATATTTCGCCCCCATCCCTTGATGAAGATGTAATAATC-------------- 720
consensus_10613#3      CATAATATATATCTCGACCACATCACTTGATGAAGAT-TAATAATCATATCAACGGCAAA 351
                                                                                   

consensus_10613#1      ------------------------------
consensus_10613#4      ------------------------------
consensus_10613#0      ------------------------------
consensus_10613#2      ------------------------------
consensus_10613#3      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 381