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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10614#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 992 fasta sequence
[TGAAGAGAATCGATTGGAGGAAGAGGATATTGATACGAGTGTGCCTAACTTTGAGCTGGATGTAGAAAATCAATTCGATAAAAATGAGGAAACCACTGACAATAAATTTGAAGCCAACCAGGATTATTCTTCACGTTTTTGGAAGAGTGCAATTACTGGTCAAGAAACTACACCTTCGTACAATTCAGATGAAGATGAAGACTACTGTCCAAGTGAAGATAGTGGTCGCGATTGGAAAGGTGAGATAAAAATT-GGTGAAGATTATCAGGCAAATATCCCTATGCTTGTGCTAGCATCAAATGTAATTGATAATCAATGTGATGAAAGTCTATCGTATTATGGTTCTGAACGGATTTTTCAAGAATCTAGTCTTCTATGGAAACCTTCGGAAAAGCTCTGTGAAACTGATGTCACACGCTTTGAGAGGTCATATGCCCAAGTTGTTCTGTCT-ACACTGCCTAATGAACGAACAATAGACGATGAAGAGGCTTTATTCTTGTTAATGCGTTGTGATTACGATACGGATGAAGCGCTGCAACGATTACAATTTAAAGCAGTATCACCAATTGCTGTTCCCGGCTATTTAGATTCATGGTCGGAGTCCGATTGTACAGCATTTGAGAAAAGTTTCGCTTTATGTGGAAAAGATTTTCGGCAGATCCGAGAGACACGA-CTTCGTCATAAAACTGTATCGGAACTAATTCATTTTTATTACCTTTGGAAGAAGACAGCACGTCATGATGAGTTTGCGCGAATATATCGTAGAGATAAAAAGAAATCTTCACATCCTAACATTGCGGATTTTATGGATTGTTTGGCTATGGAACAAGAAATTCTGGCGGAATCCTATATGCAAAGTGCCACTGATGTAGTTTTGTCAACTGCAGCATCGAATCCAGATCCTCATAAGTACATTCAGCTTACTTCAATCAGTAATATCGGTTCCATGAAAGCTGGTAGTTGTCAGATGGACTCATCTATTAGTAGTAACA]
[-] EMBL CD111162 [TGAAGAGAATCGATTGGAGGAAGAGGATATTGATACGAGTGTGCCTAACTTTGAGCTGGATGTAGAAAATCAATTCGATAAAAATGAGGAAACCACTGACAATAAATTTGAAGCCAACCAGGATTATTCTTCACGTTTTTGGAAGAGTGCAATTACTGGTCAAGAAACTACACCTTCGTACAATTCAGATGAAGATGAAGACTACTGTCCAAGTGAAGATAGTGGTCGCGATTGGAAAGGTGAGATAAAAATTNGGTGAAGATTATCAG ]
[-] EMBL CD154840 [ AAATTTGAAGCCAACCAGGATTATTCTTCACGTTTTTGGAAGAGTGCAATTACTGGTCAAGAAACTACACCTTCGTACAATTCAGATGAAGATGAAGACTACTGTCCAAGTGAAGATAGTGGTCGCGATTGGAAAGGTGAGATAAAAATT GGTGAAGATTATCAGGCAAATATCCCTATGCTTGTGCTAGCATCAAATGTAATTGATAATCAATGTGATGAAAGTCTATCGTATTATGGTTCTGAACGGATTTTTCAAGAATCTAGTCTTCTATGGAAACCTTCGGAAAAGCTCTGTGAAACTGATGTCATACGCTTTGAGAGGTCATATGCCCAAGTTGTTCTGTCT ACACTGCCTAATGAACGAACAATAGACGATGAAGAGGCTTTATTCTTGTTAATGCGTTGTGATTACGAT ]
[-] EMBL CD154808 [ AAATTTGAAGCCAACCAGGATTATTCTTCACGTTTTTGGAAGAGTGCAATTACTGGTCAAGAAACTACACCTTCGTACAATTCAGATGAAGATGAAGACTACTGTCCAAGTGAGGATAGTGGTCGCGATTGGAAAGGTGAGATAAAAATT GGTGAAGATTATCAGGCAAATATCCCTATGCTTGTGCTAGCATCAAATGTAATTGATAATCAATGTGATGAAAGTCTATCGTATTATGGTTCTGAACGGATTTTTCAAGAATCTAGTCTTCTATGGAAACCTTCGGAAAAGCTCTGTGAAACTGATGTCACACGCTTTGAGAGGTCATATGCCCAAGTTGTTCTGTCT ACACTGCCTAATGAACGAACAATAGACGATGAAGAGGCTTTATTCTTGTTAATGCGTTGTGATTACGAT ]
[+] EMBL CD084606 [ TGAAGATGAAGACTACTGTCCAAGTGAAGATAGTGGTCGCGATTGGAAAGGTGAGATAAAAATT GGTGAAGATTATCAGGCAAATATCCCTATGCTTGTGCTAGCATCAAATGTAATTGATAATCAATGTGATGAAAGTCTATCGTATTATGGTTCTGAACGGATTTTTCAAGAATCTAGTCTTCTATGGAAACCTTCGGAAAAGCTCTGTGAAACTGATGTCACACGCTTTGAGAGGTCATATGCCCAAGTTGTTCTGTCT ACACTGCCTAATGAACGAACAATAGACGATGAAGAGGCTTTATTCTTGTTAATGCGTTGTGATTACGATACGGATGAAGCGCTGCAACGATTACAATTTAAAGCAGTATCACCAATTGCTGTTCCCAGCTATTTAGATTCATGGTCGGAGTCCGATTGTACAGCATTTGAGAAAAGTTTCGCTTTATGTGGAAAAGATTTTCGGCAGATCCGAGAGACACGA CTTCGTCATAAAACTGTATCGGAACTAATTCATTTTTATTACCTTTGGAAGAAGACAGCACGTCATGATGAGTTTGCGCGAATATATCGTAGAGATAAAAAGAAAT ]
[+] EMBL CD084618 [ TGAAGATGAAGACTACTGTCCAAGTGAAGATAGTGGTCGCGATTGGAAAGGTGAGATAAAAATT GGTGAAGATTATCAAGCAAATATCCCTATGCTTGTGCTAGCATCAAATGTAATTGATAATCAATCTGATGAAAGTCTATCGTATTATGGTTCTGAACGGATTTTTCAAGAATCTAGTCTTCTATGGAAACCTTCGGAAAAGCTCTGTGAAACTGATGTCACACGCTTTGAGAGGTCATATGCCCAAGTTGTTCTGTCT ACACTGCCTAATGAACGAACAATAGACGATGAAGAGGCTTTACTCTTGTTAATGCGTTGTGATTACGATACGGATGAAGCGCTGCAACGATTACAATTTAAAGCAGTATCACCAATTGCTGTTCCCGGCTATTTAGATTCATGGTCGGAGTCCGATTGTACAGCATTTGAGAAAAGTTTCGCTTTATGTGGAAAAGATTTTCGGCA ]
[+] EMBL CD195976 [ taAAGATAGTGCTCGCGATTGATAATCTGAGACAAAAATT GGTGAAGATTATCAGGCAAATATCCCTATGCTTGTGCTAGCATCAAATGTTATTGATAATCAATGTGATGAAAGTCTATCGTATTATGGCTCTGAACGGATTTTTCAAGAATCTAGTCTTCTATGGAAACCTTCGCAAAAGCTCTGTGAAACTGATGTCACACGCTTTGAGAGGTCATATGCCCAAGTTGTTCTGTCT ACACTGCCTAATGAACGAACAATAGACGATGAAGAGGCTTTATTCTTGTTAATGCGTTGTGATTACGATACGGATGAAGC ]
[+] EMBL CD195943 [ GTGGTCGCGATTGGAAAGGTGAGATAAAAATT GGTGAAGATTATCAGGCAAATATCCCTATGCTTGTGCTAGCATCAAATGTAATTGATAATCAATGTGATGAAAGTCTATCGTATTATGGTTCTGAACGGATTTTTCAAGAATCTAGTCTTCTATGGAAACTTTCGGAAAAGCTCTGTGAAACTGATGTCACACGCTTTGAGAGGTCATATGCCCAAGTTGTTCTGTCT ACACTGCCTAATGAACGAACAATAGACGATGAAGAGGCTTTATTCTTGTTAATGCGTTGTGATTACGATACGNATGAAGCGCTGCNACGATTACNATTT AAGCAGTATCACC ]
[+] EMBL CD183364 [ TGGTCGCGATTGGAAAGGTGAGATAAAAATT GGTGAAGATTATCAGGCAAATATCCCTATGCTTGTGCTAGCATCAAATGTAATTGATAATCAATGTGATGAAAGTCTATCGTATTATGGTTCTGAACGGATTTTTCAAGAATCTAGTCTTCTATGGAAACCTTCGGAAAAGCTCTGTGAAACTGATGTCACACGCTTTGAGAGGTCATATGCCCAAGTTGTTCTGTCT ACACTGCCTAATGAACGAACAATAGACGATGAAGAGGCTTTATTCTTGTTAATGCGTTGTGATTACGATACGGATGAAGCGCTGCAACGATTACAATTTAAAGCAGTATCACCAAT ]
[+] EMBL CD190788 [ GAGATAAAAATT GGTGAAGATTATCAGGCAAATATCCCTATGCTTGTGCTAGCATCAAATGTAATTGATAATCAATGTGATGAAAGTCTATCGTATTATGGTTCTGAACGGATGTTTCAAGAATCTAGTCTTCTATGGAAACCTTCGGAAGAGCTCTGTGAAACTGATGTCACACGCTTTGAGAGGTCATATGCCCAAGTTGTTCTGTCT ACACTGCCTAATGAACGAACAATAGACGATGAAGAGGCTTTATTCTTGTTAATGCGTTGTGATTACGATACGGATGAAGCGCTGCAACGATTACAATTTAAAGCAGTATCACCAATTGCTGTTCCCGGCTATTTAGATTCATGGTCGGAGTCCGATTGTACAGCATTTGAGAAAAGTTTCGCTTTATGTGGAAAAGATTTTCGGCAGATCCGAGAGACACGA CTTCGTCATAAAACTGTATCGGAACTAATTCATTTTTATTACCTTTGGAAG AGACAGCACGTCATG ]
[+] EMBL CD089228 [ TGTGCTAGCATCAAATGTAATTGATAATCAATGTGATGAAAGTCTATCGTATTATGGTTCTGAACGGATTTTTCAAGTATCTAGTCTTCTATGGAAACCTTCGGAAAAGCTCTGTGAAACTGATGTCACACGCTTTGAGAGGTCATATGCCCAAGTTGTTCTGTCT ACACTGCCTAATGAACGAACAATAGACGATGAAGGGGCTTTATTCTTGTTAATGCGTTGTGATTACGATACGGATGAAGCGCTGCAACGATTACAATTTAAAGCAGTATCACCAATTGCTGTTCCCGGCTATTTAGATTCATGGTCGGAGTCCGATTGTACAGCATTTGAGAAAAGTTTCGCTTTATGTGGAAAAGATTTTCGGCAGATCCGAGAGACACGA CTTCGTCATAAAACTGTATCGGAACTAATTCATTTTTATTACCTTTG ]
[+] EMBL CD130581 [ CTATCGTATTATGGTTCTGAACGGATTTTTCAAGAATCTAGTCTTCTATGGAAACCTTCGGAAAAGCTCTGTGAAACTGATGTCACACGCTTTGAGAGGTCATATGCCCAAGTTGTTCTGTCTNACCCTGCCTATTGA ]
[+] EMBL CD129171 [ tcggTACCCTATTATGGTTCTGAACGGATTTTTCAAGAATCTAGTCTTCTATGGAAACCTTCGGAAAAGCTCTGTGAAACTGATGTCACACGCTTTGAGAGGTCATATGCCCAAGTTGTTCTGTCT ACACTGCCTAATGAACGAACAATAGACGATGAAGAGGCTTTATTCCTGTTAATGCGTTGTGATTACG ]
[+] EMBL CD129185 [ cggTACCCTATTATGGTTCTGAACGGATTTTTCAAGAATCTAGTCTTCTATGGAAACCTTCGGAAAAGCTCTGTGAAACTGATGTCACACGCTTTGAGAGGTCATATGCCCAAGTTGTTCTGTCT ACACTGCCTAATGAACGAACAATAGACGATGAAGAGGCTTTATTCCTGTTAATGCGTTGTGATTACG ]
[-] EMBL CD147231 [ CGGATGAAGCGCTGCAACGATTACAATTTAAAGCAGTATCACCAATTGCTGTTCCCGGCTATTTAGATTCATGGTCGGAGTCCGATTGTACAGCATTTGAGAAAAGTTTCGCTTTATGTGGAAAAGATTTTCGGCAGATCCGAGAGACACGA CTTCGTCATAAAACTGTATCGGAACTAATTCATTTTTATTACCTTTGGAAGAAGACAGCACGTCATGATGAGTTTGCGCGAATATATCGTAGAGATAAAAAGAAATCTTCACATCCTAACATTGCGGATTTTATGGATTGTTTGGCTATGGAACAAGAAATTCTGGCGGAATCCTATATGCAAAGTGCCACTGATGTAGTTTTGTCAACTGCAGCATCGAATCCAGATCCTCATAAGTACATTCAGCTTACTTCAATCAGTAATATCGGTTCCATGAAAGCTGGTAGTTGTCAGATGGACTCATCTATTAGTAGTAACA]
[-] EMBL CD195874 [ ATTACAATTTAAAGCAGTATCACCAATTGCTGTTCCCGGCTATTTAGATTCATGGTCGGAGTCCGATTGTACAGCATTTGAGAAAAGTTTCGCTTTATGTGGAAAAGATTTTCGGCAGATCCGAGAGACACGC CTTCGTCAT ]
[-] EMBL CD196022 [ TTGCTGTTCCCGGCTATTTAGATTCATGGTCGGAGTCCGATTGTACAGCATATGAGAAAAGTTTCGCTTTATGTGGAAAAGATTTTCGGCAGATCCGAGAGACGCGAGCTTGGTCAT ]
consensusID : consensus_10614#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 424 fasta sequence
[ATTATAAAATTTACGTACAATACTTCCTCGTTTTCATCGGTTCTCTAACAATGGCAAATCCATTATGTAAACTGAATGCTCAGCATTCTCCATAATCCCCTCATGCTAATATTTATAATTCATTGACCAACAATACGAACTTCATATCACGTACTTAAATTACTTATTCTCTGAAGCTCTCCTTCCTACATTTTATTTCCTTAATCTCTTTTCTCTCTATATTTCCAACATGCTATATAGGAGATAAAAATTGGTGAAGATTATCAGGCAAATATCCCTATGCTTGTGCTAGCATCAAATGTAATTGATAATCAATGTGATGAAAGTCTATCGTATTATGGTTCTGAACGGATTTTTCAAGAATCTAGTCTTCTATGGAAACCTTCGGAAAAGCTCTGTGAAACTGATGTCACACGCTTTGAGA]
[-] EMBL CD186206 [ATTATAAAATTTACGTACAATACTTCCTCGTTTTCATCGGTTCTCTAACAATGGCAAATCCATTATGTAAACTGAATGCTCAGCATTCTCCATAATCCCCTCATGCTAATATTTATAATTCATTGACCAACAATACGAACTTCATATCACGTACTTAAATTACTTATTCTCTGAAGCTCTCCTTCCTACATTTTATTTCCTTAATCTCTTTTCTCTCTATATTTCCAACATGCTATATAGGAGATAAAAATTGGTGAAGATTATCAGGCAAATATCCCTATGCTTGTGCTAGCATCAAATGTAATTGATAATCAATGTGATGAAAGTCTATCGTATTATGGTTCTGAACGGATTTTTCAAGAATCTAGTCTTCTATGGAAACCTTCGGAAAAGCTCTGTGAAACTGATGTCACACGCTTTGAGA]
consensusID : consensus_10614#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 403 fasta sequence
[ATATTGATACGAGTGTGCCTAACTTTGAGCTGGATGTAGAAAATCAATTCGATAAAAATGAGGAAACCACTGACAATAAATTTGAAGCCAACCAGGATTATTCTTCACGTTTTTGGAAGAGTGCAATTACTGGTCAAGAAACTACACCTTCGTACAATTCAGATGAAGATGAAGACTACTGTCCAAGTGAAGATAGTGGTCGCGATTGGAAAGGTTACTTTTGTTATCGTTAATACCCAGCAACTCAATGGGAGATTTAATGAGGAAGTCTCTTGACGTATTACGTGTCGGTTACCATCAATAATTGTTGAATAACAATCAGTGTAATAAAATTAACAACAGCAGACAAGTCTTAACACGTGCAGATAAAATTTGTGCCAATCAATAACAAAGCAGTTAAACA]
[-] EMBL CD190157 [ATATTGATACGAGTGTGCCTAACTTTGAGCTGGATGTAGAAAATCAATTCGATAAAAATGAGGAAACCACTGACAATAAATTTGAAGCCAACCAGGATTATTCTTCACGTTTTTGGAAGAGTGCAATTACTGGTCAAGAAACTACACCTTCGTACAATTCAGATGAAGATGAAGACTACTGTCCAAGTGAAGATAGTGGTCGCGATTGGAAAGGTTACTTTTGTTATCGTTAATACCCAGCAACTCAATGGGAGATTTAATGAGGAAGTCTCTTGACGTATTACGTGTCGGTTACCATCAATAATTGTTGAATAACAATCAGTGTAATAAAAT ]
[+] EMBL CD195666 [ GTGGTCGCGATTGGAAAGGTTACTTTTGTTATCGTTAATACCCAGCAACTCAATGGGAGATTTAATGAGGAAGTCTCTTGACGTATTACGTGTCGGTTACCATCAATAATTGTTGAATAACAATCAGTGTAATAAAATTAACAACAGCAGACAAGTCTTAACACGTGCAGATAAAATTTGTGCCAATCAATAACAAAGCAGTTAAACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10614#0 TGAAGAGAATCGATTGGAGGAAGAGGATATTGATACGAGTGTGCCTAACTTTGAGC---- 56
consensus_10614#2 --------------------------ATATTGATACGAGTGTGCCTAACTTTGAGC---- 30
consensus_10614#1 ------------------ATTATAAAATTTACGTACAATACTTCCTCGTTTTCATCGGTT 42
** * *** * * *** *** * *
consensus_10614#0 ---TGGATGTAGAAAATCAATTCGATAAAAATGAGGAA-ACCACTGACAATAAATT--TG 110
consensus_10614#2 ---TGGATGTAGAAAATCAATTCGATAAAAATGAGGAA-ACCACTGACAATAAATT--TG 84
consensus_10614#1 CTCTAACAATGGCAAATCCATTATGTAAACTGAATGCTCAGCATTCTCCATAATCCCCTC 102
* * * ***** *** **** * * * ** * * **** *
consensus_10614#0 AAGCCAACCAGGATTATTCTTCACGTTTTTGGAAGAGTGCAATTACTGGTCAAGAAACTA 170
consensus_10614#2 AAGCCAACCAGGATTATTCTTCACGTTTTTGGAAGAGTGCAATTACTGGTCAAGAAACTA 144
consensus_10614#1 ATGCTAATATTTATAATTCATTGACCAACAATACGAACTTCATATCACGTACTTAAATTA 162
* ** ** ** **** * * ** ** * ** *** **
consensus_10614#0 CACCTTCGTACAATTCAGATGAAGATGAAGACTACTGTCCAAGTGAAGATAGTGGTCGCG 230
consensus_10614#2 CACCTTCGTACAATTCAGATGAAGATGAAGACTACTGTCCAAGTGAAGATAGTGGTCGCG 204
consensus_10614#1 CTTATTC-TCTGAAGCTCTCCTTCCTACATTTTATTTCCTTAATCTCTTTTCTCTCTATA 221
* *** * * * * * ** * * * * * *
consensus_10614#0 ATTGGAA-AGGTGAGAT------AAAA-ATTGGTGAAGATTATCAGGCAAATATCCCTAT 282
consensus_10614#2 ATTGGAA-AGGTTACTT------TTGTTATCGTTAATACCCAGCAACTCAATGGGAGATT 257
consensus_10614#1 TTTCCAACATGCTATATAGGAGATAAAAATTGGTGAAGATTATCAGGCAAATATCCCTAT 281
** ** * * * * ** * * * * ** *** *
consensus_10614#0 GCTTGTGCTAGCATCA-AATGTAATTGATAATCAATGTGATGAAAGTCTATCGTATTATG 341
consensus_10614#2 TAATGAGGAAGTCTCTTGACGTATTACGTGTCGGTTACCATCAATAATTGTTGAATAACA 317
consensus_10614#1 GCTTGTGCTAGCATCA-AATGTAATTGATAATCAATGTGATGAAAGTCTATCGTATTATG 340
** * ** ** * *** * * * ** ** * * * ** *
consensus_10614#0 GTT--CTGAACGGATTTTTCAAGAATCTAGTCTTCTATGGAAACCTTCGGAAAAGCTCTG 399
consensus_10614#2 ATCAGTGTAATAAAATTAACAACAG--CAGACAAGTCTTAACACGTGCAGATAAAATTTG 375
consensus_10614#1 GTT--CTGAACGGATTTTTCAAGAATCTAGTCTTCTATGGAAACCTTCGGAAAAGCTCTG 398
* ** * ** *** * ** * * * * ** * * ** ** * **
consensus_10614#0 TGA-AACTGATGTCACACGCTTTGAGAGGTCATATGCCCAAGTTGTTCTGTCTACACTGC 458
consensus_10614#2 TGCCAATCAATAACAAAGCAGTTAAACA-------------------------------- 403
consensus_10614#1 TGA-AACTGATGTCACACGCTTTGAGA--------------------------------- 424
** ** ** ** * ** *
consensus_10614#0 CTAATGAACGAACAATAGACGATGAAGAGGCTTTATTCTTGTTAATGCGTTGTGATTACG 518
consensus_10614#2 ------------------------------------------------------------
consensus_10614#1 ------------------------------------------------------------
consensus_10614#0 ATACGGATGAAGCGCTGCAACGATTACAATTTAAAGCAGTATCACCAATTGCTGTTCCCG 578
consensus_10614#2 ------------------------------------------------------------
consensus_10614#1 ------------------------------------------------------------
consensus_10614#0 GCTATTTAGATTCATGGTCGGAGTCCGATTGTACAGCATTTGAGAAAAGTTTCGCTTTAT 638
consensus_10614#2 ------------------------------------------------------------
consensus_10614#1 ------------------------------------------------------------
consensus_10614#0 GTGGAAAAGATTTTCGGCAGATCCGAGAGACACGACTTCGTCATAAAACTGTATCGGAAC 698
consensus_10614#2 ------------------------------------------------------------
consensus_10614#1 ------------------------------------------------------------
consensus_10614#0 TAATTCATTTTTATTACCTTTGGAAGAAGACAGCACGTCATGATGAGTTTGCGCGAATAT 758
consensus_10614#2 ------------------------------------------------------------
consensus_10614#1 ------------------------------------------------------------
consensus_10614#0 ATCGTAGAGATAAAAAGAAATCTTCACATCCTAACATTGCGGATTTTATGGATTGTTTGG 818
consensus_10614#2 ------------------------------------------------------------
consensus_10614#1 ------------------------------------------------------------
consensus_10614#0 CTATGGAACAAGAAATTCTGGCGGAATCCTATATGCAAAGTGCCACTGATGTAGTTTTGT 878
consensus_10614#2 ------------------------------------------------------------
consensus_10614#1 ------------------------------------------------------------
consensus_10614#0 CAACTGCAGCATCGAATCCAGATCCTCATAAGTACATTCAGCTTACTTCAATCAGTAATA 938
consensus_10614#2 ------------------------------------------------------------
consensus_10614#1 ------------------------------------------------------------
consensus_10614#0 TCGGTTCCATGAAAGCTGGTAGTTGTCAGATGGACTCATCTATTAGTAGTAACA 992
consensus_10614#2 ------------------------------------------------------
consensus_10614#1 ------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||