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Schistosoma mansoni
cluster # 10628 cluster # 10628       Sequences # 19       consensus # 6


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10628#0 length = 950 sequences # 6  
consensus_10628#1 length = 584 sequences # 3  
consensus_10628#2 length = 474 sequences # 3  
consensus_10628#3 length = 439 sequences # 4  
consensus_10628#4 length = 413 sequences # 2  
consensus_10628#5 length = 401 sequences # 1  

consensusID : consensus_10628#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 950
fasta sequence
                              [TCCTGATCTATCCGCAACAAATGTTTGTTACGTAACAGAGATGCACTGAATTGATCCACATTGTTCATGTCAGCTGAGATGAGTAGTGGAGCAGCGAACATACACCACATGCCCATATGAACTCGCTTTTGATCATTGGAAAGTCCGTTGTTTCCTAAGACCAACATATCGGGATCGTTCCAGTGTCCTGGACCAGCCACTTTCGGTAAAACATCGTTGCGAAGTTTGTATCCATTTATGATACTGATTATAGATCCCCAATTGCTTTGCACGTTGGACGACACTCGCCACAAATTACAGTTATTTTGTAATCTTTCCCAGTCCACCAAATTGTGATTTGAAAGCCAATAGCTATATGCTGGATAAGTACACAAAAGCGTTACAGGTCTACCAGTTCCATTAAGTAATCTACTGAATTTTTCAAAACCATCTGGTTCAGTATTCTGAGCACAGTGGCATGCATGCATCTTTACATAATCTACTCCCCACTCGGCCACTGATTTTGCATCCAATTCCAAATGATTGATACTTCCTGGATAACCGGAACATGTCATGTTCCCGTAACCAAGAGTTATACCGAGTAGAAGATCTTTGGAGTGCAGATATTCTGTAAGGCTTTTAATACCACTGGGAAATCTTGAAGGATCTGCCATTATTCTATTCGTCTTCGGATCACGCTGTTTCGCTAACCAACAATCATCAAGTATCACATATTTATAACCCAGATCTCGCCAACCATCCGAAACCAGTTTATCAGCTGTTCGCTTGATTGCATTCTCACTAAGACAGTTGTTTGGATTGTTGTTGCAGTTTACTTGACATCCAAGCTGTCGCCATGTGTTCCACCCCATTGGTGGTGTTCTAGCCAATCCATTATCCAAACACATCACACAGTTTAGAGTGAGGATGGCTACTCCCGAAACTATTGTTAGCACCGTGAACATATTATA]

[-] EMBL CD150130             [TCCTGATCTATCCGCAACAAATGTTTGTTACGTAACAGAGATGCACTGAATTGATCCACATTGTTCATGTCAGCTGAGATGAGTAGTGGAGCAGCGAACATACACCACATGCCCATATGAACTCGCTTTTGATCATTGGAAAGTCCGTTGTTTCCTAAGACCAACATATCGGGATCGTTCCAGTGTCCTGGACCAGCCACTTTCGGTAAAACATCGTTGCGAAGTTTGTATCCATTTATGATACTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD146759             [                                                                                                                                                                                                              TAAAACATCGTTGCGAAGTTTGTATCCATTTATGATACTGATTATAGATCCCCAATTGCTTTGCACGTTGGACGACACTCGCCACAAATTACAGTTATTTTGTAATCTTTCCCAGTCCACCAAATTGTGATTTGAAAGCCAATAGCTATATGCTGGATAAGTACACAAAAGCGTTACAGGTCTACCAGTTCCATTAAGTAATCTACTGAATTTTTCAAAACCATCTGGTTCAGTATTCTGAGCACAGTGGCATGCATGCATCTTTACATAATCTACTCCCCACTCGGCCACTGATTTTGCATCCAATTCCAAATGATTGATACTTCCTGGATAACCGGAACATGTCATGTTCCCGTAACCAAGAGTTATACCGAGTAGAAGATCTTTGGAGTGCAGATATTCTGTAAGGCTTTTAATACCACTGGGAAATCTTGAAGGATCTGCCATTATTCTATTCGTCTTCGGATCACGCTGTTTCGCTAACCAACAATCATCAAGTATCAC  ATTTATAACCCAGATCTCGCCAACCATCCGAAAC                                                                                                                                                                                                            ]
[+] EMBL CD163390             [                                                                                                                                                                                                                                                                                                                                               ATTTGAAAGCCAATAGCTATATGCTGGATAAGTACACAAAAGCGTTACAGGTCTACCAGTTCCATTAAGTAATCTACTGAATTTTTCAAAACCATCTGGTTCAGTATTCTGAGCACAGTGGCACGCATGCATCTTTACATAATCTACTCCCCACTCGGCCACTGATTTTGCATCCAATTCCAAATGATTGATACTTCCTGGATAACCGGAACATGTCATGTTCCCGTAACCAAGAGTTATACCGAGTAGAAGATCTTTGGAGTGCAGATATTCTGTAAGGCTTTTAATACCACTGGGAAATCTTGAAGGATCTGCCATTATTCTATTCGTCTTCGGATCACGCTGTTTCGCTAACCAACAATCATCAAGTATCACATATTTATAACCCAGATCTCGCCAACCATCCGAAACCAGTTTATCAGCTGTTCGCTTGATTGCATT                                                                                                                                                                              ]
[-] EMBL CD163294             [                                                                                                                                                                                                                                                                                                                                                                          ATAAGTACACAAAAGCGTTACAGGTCTACCAGTTCCATTAAGTAATCTACTGAATTTTTCAAAACCATCTGGTTCAGTATTCTGAGCACAGTGGCATGCATGCATCTTTACATAATCTACTCCCCACTCGGCCACTGATTTTGCATCCAATTCCAAATGATTGATACTTCCTGGATAACCGGAACATGTCATGTTCCCGTAACCAAGAGTTATACCGAGTAGAAGATCTTTGGAGTGTAGATATTCTGTAAGGCTTTTAATACCACTGGGAAATCTTGAAGGATCTGCCATTATTCTATTCGCCTTCGGATCACGCTGTTTCGCTAACCAACAATCATCAAGTATCACATATTTATAACCCAGATCTCGCCAACCATCCGAAACCAGTTTATCAGCTGTTCGCTTGATTGCATTCTCACTAAGACAGTTGTTTGGATTGTTGTTGCAGTTTACTTGACATC                                                                                                                               ]
[+] EMBL CD156241             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GGCCACTGATTTTGCATCCAATTCCAAATGATTGATACTTCCTGGATAACCGGAACATGTCATGTTCCCGTAACCAAGAGTTATACCGAGTAGAAGATCTTTGGAGTGCAGATATTCTGTAAGGCTTTTAATACCACTGGGAAATCTTGAAGGATCTGCCATTATTCTATTCGTCTTCGGATCACGCTGTTTCGCTAACCAACAATCATCAAGTATCACATATTTATAACCCAGATCTCGCCAACCATCCGAAACCAGTTTATCAGCTGTTCGCTTGATTGCATTCTCACTAAGACAGTTGTTTGGATTGTTGTTGCAGTTTACTTGACATCCAAGCTGTCGCCATGTGTTCCACCCCATTGGTGGTGTTCTAGCCAATCCATTATCCAAACACATCACACAGTTTAGAGTGAGGATGGCTACTCCCGAAACTATTGTTAGCACCGTGAACATATTAT ]
[-] EMBL CD156553             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GCCACTGATTTTGCATCCAATTCCAAATGATTGATACTTCCTGGATAACCGGAACATGTCATGTTCCCGTAACCAAGAGTTATACCGAGTAGAAGATCTTTGGAGTGCAGATATTCTGTAAGGCTTTTAATACCACTGGGAAATCTTGACGGATCTGCCATTATTCTATTCGTCTTCGGATCACGCTGTTTCGCTAACCAACAATCATCAAGTATCACATATTTATAACCCAGATCTCGCCAACCATCCGAAACCAGTTTATCAGCTGTTCGCTTGATTGCATTCTCACTAAGACAGTTGTTTGGATTGTTGTTGCAGTTTACTTGACATCCAAGCTGTCGCCATGTGTTCCACCCCATTGGTGGTGTTCTAGCCAATCCATTATCCAAACACATCACACAGTTTAGAGTGAGGATGGCTACTCCCGAAACTATTGTTAGCACCGTGAACATATTATA]


>consensus_10628#0 TCCTGATCTATCCGCAACAAATGTTTGTTACGTAACAGAGATGCACTGAATTGATCCACA TTGTTCATGTCAGCTGAGATGAGTAGTGGAGCAGCGAACATACACCACATGCCCATATGA ACTCGCTTTTGATCATTGGAAAGTCCGTTGTTTCCTAAGACCAACATATCGGGATCGTTC CAGTGTCCTGGACCAGCCACTTTCGGTAAAACATCGTTGCGAAGTTTGTATCCATTTATG ATACTGATTATAGATCCCCAATTGCTTTGCACGTTGGACGACACTCGCCACAAATTACAG TTATTTTGTAATCTTTCCCAGTCCACCAAATTGTGATTTGAAAGCCAATAGCTATATGCT GGATAAGTACACAAAAGCGTTACAGGTCTACCAGTTCCATTAAGTAATCTACTGAATTTT TCAAAACCATCTGGTTCAGTATTCTGAGCACAGTGGCATGCATGCATCTTTACATAATCT ACTCCCCACTCGGCCACTGATTTTGCATCCAATTCCAAATGATTGATACTTCCTGGATAA CCGGAACATGTCATGTTCCCGTAACCAAGAGTTATACCGAGTAGAAGATCTTTGGAGTGC AGATATTCTGTAAGGCTTTTAATACCACTGGGAAATCTTGAAGGATCTGCCATTATTCTA TTCGTCTTCGGATCACGCTGTTTCGCTAACCAACAATCATCAAGTATCACATATTTATAA CCCAGATCTCGCCAACCATCCGAAACCAGTTTATCAGCTGTTCGCTTGATTGCATTCTCA CTAAGACAGTTGTTTGGATTGTTGTTGCAGTTTACTTGACATCCAAGCTGTCGCCATGTG TTCCACCCCATTGGTGGTGTTCTAGCCAATCCATTATCCAAACACATCACACAGTTTAGA GTGAGGATGGCTACTCCCGAAACTATTGTTAGCACCGTGAACATATTATA



consensusID : consensus_10628#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 584
fasta sequence
                              [ATCAGAATGAAATGAACTGCGTTAAAACGAAACCATGAAAGGGAAAGGTTCATCAATTCACTGAACACTATAAACCAATTTGAATGGATTCACTCGAAACATCATTATTCCAGATGGATTGATAGGAATTGTAAAGTTCTCTTTCAATCCCACGTCCTTGAACTTATCACCAGTGAATACATCCACTAATTCGAACTTATCTCCTGATATCGTATACATTTGTGATTTGAATTCATCCAGATTTGTGGTAAAGTTGATTGGTCCTCCATCACTTCTTGTGTAGACGCAAGCGATTGCCCAACCAACTGGACAATCATTTAATTGTCGTATCCACATCTGTACATCATTTCGTGATTTGATGAATTCCGCCTGATGTCCACCTCTATCCTGATCTATCGCCAACAAATGTTTATTGCGTAACAGAGATGCACTGAATTGATCCACCTTGTCCATGTCGGTTGAGATGATTAATGGAGCAGCGAACATACACCACATACCCATATGGACTCGCTTTTGATCATTGGTAAGTCCGTTGTTTCATAAGACCAACATGTCGGGATCGTTCCAGTGTCCTGGACCAGCCA]

[-] EMBL CD114653             [ATCAGAATGAAATGAACTGCGTTAAAACGAAACCATGAAAGGGAAAGGTTCATCAATTCACTGAACACTATAAACCAATTTGAATGGATTCACTCGAAACATCATTATTCCAGATGGATTGATAGGAATTGTAAAGTTCTCTTTCAATCCCACGTCCTTGAACTTATCACCAGTGAATACATCCACTAATTCGAACTTATCTCCTGATATCGTATACATTTGTGATTTGAATTCATCCAGATTTGTGGTAAAGTTGATTGGTCCTCCATCACTTCTTGTGTAGACGCAAGCGATTGCCCAACCAACTGGACAATCATTTAATTGTCGTATCCACATCTGTACATCATTTCGTGATTTGATGAATTCCGCCTGATGTCCACCTTTATCCTGATCTATCGCCAACAAATGTTTATTGC                                                                                                                                                                        ]
[-] EMBL CD122770             [                                                                                                                                                                          CAGTGAATACATCCACTAATTCGAATTTATCTCCTGATATCGTATACATTTGTGATTTGAATTCATCCAGATTTGTGGTAAAGTTGATTGGTCCTCCATCACTTCTTGTGTAGACGCAAGCGATTGCCCAACCAACTGGACAATCATTTAATTATCGTATCCACATCTGTACATCATTTCGTGATTTGATGAATTCCGCCTGATGTCCACCTCTATCCTGATCTATCGCCAACAAATGTTTATTGCGTAACAGAGATGCACTG                                                                                                                                                       ]
[-] EMBL CD118270             [                                                                                                                                                                                                                                                                                                                                                        CATTTCGTGATTTGATGAATTCCGCGTGATGTCCACCTCTATCCTGATTTATCGCCAACAAATGTTTATTGCGTAACAGAGATGCACTGAATTGATCCACCTTGTCCATGTCGGTTGAGATGATTAATGGAGCAGCGAACATACACCACATACCCATATGGACTCGCTTTTGATCATTGGTAAGTCCGTTGTTTCATAAGACCAACATGTCGGGATCGTTCCAGTGTCCTGGACCAGCCA]


>consensus_10628#1 ATCAGAATGAAATGAACTGCGTTAAAACGAAACCATGAAAGGGAAAGGTTCATCAATTCA CTGAACACTATAAACCAATTTGAATGGATTCACTCGAAACATCATTATTCCAGATGGATT GATAGGAATTGTAAAGTTCTCTTTCAATCCCACGTCCTTGAACTTATCACCAGTGAATAC ATCCACTAATTCGAACTTATCTCCTGATATCGTATACATTTGTGATTTGAATTCATCCAG ATTTGTGGTAAAGTTGATTGGTCCTCCATCACTTCTTGTGTAGACGCAAGCGATTGCCCA ACCAACTGGACAATCATTTAATTGTCGTATCCACATCTGTACATCATTTCGTGATTTGAT GAATTCCGCCTGATGTCCACCTCTATCCTGATCTATCGCCAACAAATGTTTATTGCGTAA CAGAGATGCACTGAATTGATCCACCTTGTCCATGTCGGTTGAGATGATTAATGGAGCAGC GAACATACACCACATACCCATATGGACTCGCTTTTGATCATTGGTAAGTCCGTTGTTTCA TAAGACCAACATGTCGGGATCGTTCCAGTGTCCTGGACCAGCCA



consensusID : consensus_10628#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 474
fasta sequence
                              [ACTGTTCATTTCATAGGATACTGAAGTAATCATGTGGATTAATTAGGGCTATAACAATGTCTGAAACAGTCCATCAATTTCTTCAAAAACAGTCTTCTGTTGAACACGTCTAACTCGATACATCATTATCCCGCTTGGATTGATAAAAATCATAAATTTCTGTGTTCGTTGAACCACTTGGAATCTGTCCCCACTGAACACATCCACCAATTCAAACTTATCACCAAATATCCTATACGATTGGGATTTGAATTCATCAAGACTTGTGTAAAAGTGAATCGGTCCACCACCATCAGTCGTGAAAAGACAAGCGATTGCCCAACCAATTGGATCTCCATCTAACGGTCTCACCCACATCTGTACATCATTTTGTGATTTGACGAATTCCGCCTGATGTCCACCTTTATCTTGATCTATCGCCAATAAACGTGCATTACGTAATAAAGATACACTGAAA-TATCCAAC-TGTCCATGT]

[+] EMBL CD076161             [ACTGTTCATTTCATAGGATACTGAAGTAATCATGTGGATTAATTAGGGCTATAACAATGTCTGAAACAGTCCATCAATTTCTTCAAAAACAGTCTTCTGTTGAACACGTCTAACTCGATACATCATTATCCCGCTTGGATTGATAAAAATCATAAATTTCTGTGTTCGTTGAACCACTTGGAATCTGTCCCCACTGAACACATCCACCAATTCAAACTTATCACCAAATATCCTATACGATTGGGATTTGAATTCATCAAGACTTGTGTAAAAGTGAATCGGTCCACCACCATCAGTCGTGAAAAGACAAGCGATTGCCCAACCAATTGGATCTCCATCTAACGGTCTCACCCACATCTGTACATCATTTTGGGATTTGACGAATT                                                                                          ]
[+] EMBL CD132148             [                                                                                                            TCTAACTCGATACATCATTATCCCGCTTGGATTGATAGAAATCATAAATTTCTGTGTTCGTTGAACCACTTGGAATCTGTCCCCACCGAACACATCCACCAATTCAAACTTATCACCAGATATCCTATACGATTGTGATTTGAATTCATCAAGACTTGTGTAAAAGTGAATCGGTCCACCACCATCAGTCGTGAAAAGACAAGCGATTGCCCAACCAATTGGATCTCCATCTAACGGTCTCACCCACATCTGTACATCATTTTGTGATTTGACGAATTCCGCCTGATGTCCACCTTTATCTTGATCTATCGCCAATAAACGTGCATTACGTAATAAAGATACACTGAAATTATCCAACTTGTCCATGT]
[-] EMBL CD166783             [                                                                                                                                                                                                                                                                                      aacacCCACCACCATCAGTCGTGAAAAGACAAGCGATTGCCCAACCAATTGGATCTCCATCTAACGGTCTCACCCACATCTGTACATCATTTTGTGATTTGACGAATTCCGCCTGATGTCCACCTTTATCTTGATCTATCGCCAATAAACGTGCATTACGTAATAAAGATACACTGAAA TATCCAAC TGTCC    ]


>consensus_10628#2 ACTGTTCATTTCATAGGATACTGAAGTAATCATGTGGATTAATTAGGGCTATAACAATGT CTGAAACAGTCCATCAATTTCTTCAAAAACAGTCTTCTGTTGAACACGTCTAACTCGATA CATCATTATCCCGCTTGGATTGATAAAAATCATAAATTTCTGTGTTCGTTGAACCACTTG GAATCTGTCCCCACTGAACACATCCACCAATTCAAACTTATCACCAAATATCCTATACGA TTGGGATTTGAATTCATCAAGACTTGTGTAAAAGTGAATCGGTCCACCACCATCAGTCGT GAAAAGACAAGCGATTGCCCAACCAATTGGATCTCCATCTAACGGTCTCACCCACATCTG TACATCATTTTGTGATTTGACGAATTCCGCCTGATGTCCACCTTTATCTTGATCTATCGC CAATAAACGTGCATTACGTAATAAAGATACACTGAAATATCCAACTGTCCATGT



consensusID : consensus_10628#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 439
fasta sequence
                              [ATAACTGTCCAGTTAAAATCACATCAGAATGAAATGAACTGAGTTTAACAGAAACCATGAAAAGGGAACAGTCCATCAATTTATTGATCAGTATAAATCAATTCGAATGGATTCACTCGAAACATCATTATTCCAGATGGATTGATAGGAATTGTAAAATTCTCTGTCAATCGTACATCTTTGAATCTATCACCAGTGAATACATCCAATAATTCGAATTTATCTCCTGATATCGTATACATTTGTGATTTGAATTCATCCAGATTTGTGGTAAAGTTGATTGGTCCTCCATCAACTCTTGTGTAGATGCAAGCAATTGCCCAACCACTTGGACAATTATTTAATTTTCGTATCCACAACTGCACATCATTTCGCGATTTGACAAATTCCGCCTGATGTCCATCTTTATCCTGATCTATCCGCAACAAATGTTTGTTAC]

[+] EMBL CD114739             [ATAACTGCCCAGTTAAAATCACATCAGAATGAAATGAACTGAGTTTAACAGAAACCATGAAAAGGGAACAGTCCATCAATTTATTGATCAGTATAAATCAATTCGAATGGATTCACTCGAAACATCATTATTCCAGATGGATTGATAGGAATTGTAAAATTCTCTGTCAATCGTACATCTTTGAATCTATCACCAGTGAATACATCCAATAATTCGAATTTATCTCCTGATATTGTATACATTTGTGATTTGAATTCATCCAGATTTGTGGTAAAGTTGATTGGTCCTCCATCAACTCTTGTGTAGATGCAAGCAATTGCCCAACCACTTGGACAATTATTTAATTTTCGTATCCACAACTGCACATCATTTCGCGATTTGACAAATTCCGCCTGATGTCCATCTTTATCCTGATCTATCCGCAACAAATGTTTGTTA ]
[+] EMBL CD114705             [ATAACTGTCCAGTTAAAATCACATCAGAATGAAATGAACTGAGTTTAACAGAAACCATGAAAAGGGAACAGTCCATCAATTTATTGATCAGTATAAATCAATTCGAATGGATTCACTCGAAACATCATTATTCCAGATGGATTGATAGGAATTGTAAAATTCTCTGTCAATCGTACATCTTTGAATCTATCACCAGTGAATACATCCAATAATTCGAATTTATCTCCTGATATCGTATACATTTGTGATTTGAATTCATCCAGATTTGTGGTAAAGTTGATTGGTCCTCCATCAACTCTTGTGTAGATGCAAGCAATTGCCCAACCACTTGGACAATTATTTAATTTTCGTATCCACAACTGCACATCATTTCGCGATTTGACAAATTCCGCCTGATGTCCATCTTTATCCTGATCTATCCGCAACAAATGTTTGTTA ]
[+] EMBL CD114803             [ATAACTGTCCAGTTAAAATCACATCAGAATGAAATGAACTGAGTTT ACAGAAACCATGAAAAGGGAACAGTCCATCAATTTATTGATCAGTATAAATCAATTCGAATGGATTCACTCGAAACATCATTATTCCAGATGGATTGATAGGAATTGTAAAATTCTCTGTCAATCGTACATCTTTGAATCTATCACCAGTGAATACATCCAATAATTCGAATTTATCTCCTGATATCGTATACATTTGTGATTTGAATTCATCCAGATTTGTGGTAAAGTTGATTGGTCCTCCATCAACTCTTGTGTAGATGCAAGCAATTGCCCAACCACTTGGACAATTATTTAATTTTCGTATCCACAACTGCACATCATTTCGCGATTTGACAAATTCCGCCTGATGTCCATCTTTATCCTGATCTATCCGCAACAAATGTTTGTTA ]
[-] EMBL CD114749             [ TAACTGTCCAGTTAAAATCACATCAGAATGAAATGAACTGAGTTTAACAGAAACCATGAAAAGGGAACAGTCCATCAATTTATTGATCAGTATAAATCAATTCGAATGGATTCACTCGAAACATCATTATTCCAGATGGATTGATAGGAATTGTAAAATTCTCTGTCAATCGTACATCTTTGAATCTATCACCAGTGAATACATCCAATAATTCGAATTTATCTCCTGATATCGTATACACTTGTGATTTGAATTCATCCAGATTTGTGGTAAAGTTGATTGGTCCTCCATCAACTCTTGAGTAGATGCAAGCAATTGCCCAACCACTTGGACAATTATTTAATTTTCGTATCCACAACTGCACATCATTTCGCGATTTGACAAATTCCGCCTGATGTCCATCTTTATCCTGATCTATCCGCAACAAATGTTTGTTAC]


>consensus_10628#3 ATAACTGTCCAGTTAAAATCACATCAGAATGAAATGAACTGAGTTTAACAGAAACCATGA AAAGGGAACAGTCCATCAATTTATTGATCAGTATAAATCAATTCGAATGGATTCACTCGA AACATCATTATTCCAGATGGATTGATAGGAATTGTAAAATTCTCTGTCAATCGTACATCT TTGAATCTATCACCAGTGAATACATCCAATAATTCGAATTTATCTCCTGATATCGTATAC ATTTGTGATTTGAATTCATCCAGATTTGTGGTAAAGTTGATTGGTCCTCCATCAACTCTT GTGTAGATGCAAGCAATTGCCCAACCACTTGGACAATTATTTAATTTTCGTATCCACAAC TGCACATCATTTCGCGATTTGACAAATTCCGCCTGATGTCCATCTTTATCCTGATCTATC CGCAACAAATGTTTGTTAC



consensusID : consensus_10628#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 413
fasta sequence
                              [CCCTCGAGGCCANAATTCGGCACGAGGGAATTCGTCAAATCACAAAATGATGTACAGATGTGGGTGAGACCGTTAGATGGAGATCCAATTGGTTGGGCAATCGCTTGTCTTTTCACGACTGATGGTGGTGGACCGATTCACTTTTACACAAGTCTTGATGAATTCAAATCACAATCGTATAGGATATCTGGTGATAAGTTTGAATTGGTGGATGTGTTCAGTGGGGACAGATTCCAAGTGGTTCAACGAACACAGAAATTTATGATTTCTATCAATCCAAGCGGGATAATGATGTATCGAGTTAGACGTGTTCAACAGAAGACTGTTTCTGAAGAAATTGATGGACTGTTTCAGACATTGTTATAGCCCTAATTAATCCACATGATTACTTCAGTATCCTATGAAATGAACAG]

[+] EMBL CD082563             [CCCTCGAGGCCANAATTCGGCACGAGGGAATTCGTCAAATCACAAAATGATGTACAGATGTGGGTGAGACCGTTAGATGGAGATCCAATTGGTTGGGCAATCGCTTGTCTTTTCACGACTGATGGTGGTGGACCGATTCACTTTTACACAAGTCTTGATGAATTCAAATCACAATCGTATAGGATATCTGGTGATAAGTTTGAATTGGTGGATGTGTTCAGTGGGGACAGATTCCAAGTGGTTCAACGAACACAGAAATTTATGATTTCTATCAATCCAAGCGGGATAATGATGTATCGAGTTAGACGTGTTCAACAGAAGACTGTTTCTGAAGAAATTGATGGACTGTTTCAGACATTGTTATAGCCCTAATTAATCCACATGATTACTTCAGTATCCTATGAAATGAACAG]
[+] EMBL CD139906             [                                                                                                                            GTGGTGGACCGATTCACTTTTACACAAGTCTTGATGAATTCAAATCACAATCGTATAGGATATCTGGTGATAAGTTTGAATTGGTGGATGTGTTCAGTGGGGACAGATTCCAAGTGGTTCAACGAACACAGAAATTTATGATTTCTATCAATCCAAGCGGGATAATGATGTATCGAGTTAGACGTGTTCAACAGAAGACTGTTTCTGAAGAAATTGATGGACTGTTTCAGACATTGTTATAGCCCTAATTAATCCACATGATTACTTCAGTA                 ]


>consensus_10628#4 CCCTCGAGGCCANAATTCGGCACGAGGGAATTCGTCAAATCACAAAATGATGTACAGATG TGGGTGAGACCGTTAGATGGAGATCCAATTGGTTGGGCAATCGCTTGTCTTTTCACGACT GATGGTGGTGGACCGATTCACTTTTACACAAGTCTTGATGAATTCAAATCACAATCGTAT AGGATATCTGGTGATAAGTTTGAATTGGTGGATGTGTTCAGTGGGGACAGATTCCAAGTG GTTCAACGAACACAGAAATTTATGATTTCTATCAATCCAAGCGGGATAATGATGTATCGA GTTAGACGTGTTCAACAGAAGACTGTTTCTGAAGAAATTGATGGACTGTTTCAGACATTG TTATAGCCCTAATTAATCCACATGATTACTTCAGTATCCTATGAAATGAACAG



consensusID : consensus_10628#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 401
fasta sequence
                              [GTTCCATAACCAATAGTTATTCCGAACAGTAGATTTTTCGAATGCAAATATTGTGCAAGGTTTTTCATACCGCTCGGAAATCTCGAAGAATCTGGCAATAGTGCAACCGTCTTCGTATCACGCAGTCTTGATAACCAACAATCATCTATTATCACATATTTGTAACCCAGATCTCGCCAACCATCGGATACCAATTTATCAGCTGTTCGCTTGATTGCATTTTCATTAAGACAGTTGATTTGAGTGTTGTTGCAGTTTACTTGACATCCAAGTTGTTGCCATGTGTTCCACCCCATTGGTGGTGTTCTAGCCAATCCATTATTCAAACACATAACAGAATTCAGAGTGAGGAAGACTACTCCCGAAAATATCGTTAGCACCGTGAACATATTATATTTCGT]

[+] EMBL CD094916             [GTTCCATAACCAATAGTTATTCCGAACAGTAGATTTTTCGAATGCAAATATTGTGCAAGGTTTTTCATACCGCTCGGAAATCTCGAAGAATCTGGCAATAGTGCAACCGTCTTCGTATCACGCAGTCTTGATAACCAACAATCATCTATTATCACATATTTGTAACCCAGATCTCGCCAACCATCGGATACCAATTTATCAGCTGTTCGCTTGATTGCATTTTCATTAAGACAGTTGATTTGAGTGTTGTTGCAGTTTACTTGACATCCAAGTTGTTGCCATGTGTTCCACCCCATTGGTGGTGTTCTAGCCAATCCATTATTCAAACACATAACAGAATTCAGAGTGAGGAAGACTACTCCCGAAAATATCGTTAGCACCGTGAACATATTATATTTCGT]


>consensus_10628#5 GTTCCATAACCAATAGTTATTCCGAACAGTAGATTTTTCGAATGCAAATATTGTGCAAGG TTTTTCATACCGCTCGGAAATCTCGAAGAATCTGGCAATAGTGCAACCGTCTTCGTATCA CGCAGTCTTGATAACCAACAATCATCTATTATCACATATTTGTAACCCAGATCTCGCCAA CCATCGGATACCAATTTATCAGCTGTTCGCTTGATTGCATTTTCATTAAGACAGTTGATT TGAGTGTTGTTGCAGTTTACTTGACATCCAAGTTGTTGCCATGTGTTCCACCCCATTGGT GGTGTTCTAGCCAATCCATTATTCAAACACATAACAGAATTCAGAGTGAGGAAGACTACT CCCGAAAATATCGTTAGCACCGTGAACATATTATATTTCGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10628#0      TCCTGATCTATCCGCAACAAATGTTTGTTACGTAACAGAGATGCACTGAATTGATCCACA 60
consensus_10628#5      ------------------------------------------------------------
consensus_10628#1      ------------------------------------------------------------
consensus_10628#3      ------------------------------------------------------------
consensus_10628#2      ------------------------------------------------------------
consensus_10628#4      ------------------------------------------------------------
                                                                                   

consensus_10628#0      TTGTTCATGTCAGCTGAGATGAGTAGTGGAGCAGCGAACATACACCACATGCCCATATGA 120
consensus_10628#5      ------------------------------------------------------------
consensus_10628#1      ------------------------------------------------------------
consensus_10628#3      ------------------------------------------------------------
consensus_10628#2      ------------------------------------------------------------
consensus_10628#4      ------------------------------------------------------------
                                                                                   

consensus_10628#0      ACTCGCTTTTGATCATTGGAAAGTCCGTTGTTTCCTAAGACCAACATATCGGGATCGTTC 180
consensus_10628#5      ------------------------------------------------------------
consensus_10628#1      ------------------------------------------------------------
consensus_10628#3      ------------------------------------------------------------
consensus_10628#2      ------------------------------------------------------------
consensus_10628#4      ------------------------------------------------------------
                                                                                   

consensus_10628#0      CAGTGTCCTGGACCAGCCACTTTCGGTAAAACATCGTTGCGAAGTTTGTATCCATTTATG 240
consensus_10628#5      ------------------------------------------------------------
consensus_10628#1      ------------------------------------------------------------
consensus_10628#3      ------------------------------------------------------------
consensus_10628#2      ------------------------------------------------------------
consensus_10628#4      ------------------------------------------------------------
                                                                                   

consensus_10628#0      ATACTGATTATAGATCCCCAATTGCTTTGCACGTTGGACGACACTCGCCACAAATTACAG 300
consensus_10628#5      ------------------------------------------------------------
consensus_10628#1      ------------------------------------------------------------
consensus_10628#3      ------------------------------------------------------------
consensus_10628#2      ------------------------------------------------------------
consensus_10628#4      ------------------------------------------------------------
                                                                                   

consensus_10628#0      TTATTTTGTAATCTTTCCCAGTCCACCAAATTGTGATTTGAAAGCCAATAGCTATATGCT 360
consensus_10628#5      ------------------------------------------------------------
consensus_10628#1      ------------------------------------------------------------
consensus_10628#3      ------------------------------------------------------------
consensus_10628#2      ------------------------------------------------------------
consensus_10628#4      ------------------------------------------------------------
                                                                                   

consensus_10628#0      GGATAAGTACACAAAAGCGTTACAGGTCTACCAGTTCCATTAAGTAATCTACTGAATTTT 420
consensus_10628#5      ------------------------------------------------------------
consensus_10628#1      ------------------------------------------------------------
consensus_10628#3      ------------------------------------------------------------
consensus_10628#2      ------------------------------------------------------------
consensus_10628#4      ------------------------------------------------------------
                                                                                   

consensus_10628#0      TCAAAACCATCTGGTTCAGTATTCTGAGCACAGTGGCATGCATGCATCTTTACATAATCT 480
consensus_10628#5      ------------------------------------------------------------
consensus_10628#1      ------------------------------------------------------------
consensus_10628#3      ------------------------------------------------------ATAACT 6
consensus_10628#2      ---------------------------------------------------------ACT 3
consensus_10628#4      ------------------------------------------------------------
                                                                                   

consensus_10628#0      ACTCCCCACTCGGCCACTGATTTTGCATCCAATTCCAAATGATTGATACTTCCTGGATAA 540
consensus_10628#5      ------------------------------------------------------------
consensus_10628#1      ----------------ATCAGAATGAA---ATGAACTGCGTTAAAACGAAACCATGAAA- 40
consensus_10628#3      GTCCAGTTAAAATCACATCAGAATGAA---ATGAACTGAGTTTAACAGAAACCATGAAAA 63
consensus_10628#2      GTTCATTTCATAGGATACTGAAGTAATCATGTGGATTAATTAGGGCTATAACAATGTCT- 62
consensus_10628#4      ------------------------------------------------------------
                                                                                   

consensus_10628#0      CCGGAACATGTCATGTTCCCGTAACCAAGAGTTATACCGAGT-AGAAGATC--TTTGGAG 597
consensus_10628#5      ---------------GTTCCATAACCAATAGTTATTCCGAAC-AGTAGATT--TTTCGAA 42
consensus_10628#1      GGGAAAGGTTCATCAATTCACTGAACACTATAAACCAATTTG-AATGGATTCACTCGAAA 99
consensus_10628#3      GGGAACAGTCCATCAATTTATTGATCAGTATAAATCAATTCG-AATGGATTCACTCGAAA 122
consensus_10628#2      -GAAACAGTCCATCAATTTCTTCAAAAACAGTCTTCTGTTGA-ACACGTCTAACTCGATA 120
consensus_10628#4      ---------------CCCTCGAGGCCANAATTCGGCACGAGGGAATTCGTCAAATCACAA 45
                                                 *  *             *          *     

consensus_10628#0      TGCAGATATTCTGTAAGGCTTTTAATACCACTGGGAAATCTTGAAGGATCTGCCATTATT 657
consensus_10628#5      TGCAAATATTGTGCAAGGTTTTTCATACCGCTCGGAAATCTCGAAGAATCTGGCAATAGT 102
consensus_10628#1      CATCATTATTCCAGATGGATTGATAGGAATTGTAAAGTTCTCTTTCAATCCCACGTCCTT 159
consensus_10628#3      CATCATTATTCCAGATGGATTGATAGGAATTGTAAAATTCTCTGTCAATCGTACATCTTT 182
consensus_10628#2      CATCATTATCCCGCTTGGATTGATAAAAATCATAAATTTCTGTGTTCGTTGAACCACTTG 180
consensus_10628#4      AATGATGTACAGATGTGGGTGAGACCGTTAGATGGAGATC-CAATTGGTTGGGCAATCGC 104
                                       ** *               *  **        *    *      

consensus_10628#0      CTATTCGTCTTCGGATCACGCTGTTTCGCTAACCAACA-ATCATCAAGTATCACATA--T 714
consensus_10628#5      GCAACCGTCTTCGTATCACGCAGTCTTGATAACCAACA-ATCATCTATTATCACATA--T 159
consensus_10628#1      GAACTTATCACCAGTGAATACATCCACTAATTCGAACTTATCTCCTGATATCGTATACAT 219
consensus_10628#3      GAATCTATCACCAGTGAATACATCCAATAATTCGAATTTATCTCCTGATATCGTATACAT 242
consensus_10628#2      GAATCTGTCCCCACTGAACACATCCACCAATTCAAACTTATCACCAAATATCCTATACGA 240
consensus_10628#4      TTGTCTTTTCACGACTGATGGTGGTGGACCGATTCACTTTTACACAAGTCTTG-ATGAAT 163
                              *   *     *                 *    *   *   * *   **    

consensus_10628#0      TTATAACCCAGATCTCGCCAACCATCCGAAACCAGTTTATCAGCTGTTCGCTTGATTGCA 774
consensus_10628#5      TTGTAACCCAGATCTCGCCAACCATCGGATACCAATTTATCAGCTGTTCGCTTGATTGCA 219
consensus_10628#1      TTGTGATTTGAATTCATCCAGATTTGTGGTAA-AGTTGATTGGTCCTCCATCACTTCTTG 278
consensus_10628#3      TTGTGATTTGAATTCATCCAGATTTGTGGTAA-AGTTGATTGGTCCTCCATCAACTCTTG 301
consensus_10628#2      TTGGGATTTGAATTCATCAAGACTTGTGTAAA-AGTGAATCGGTCCACCACCATCAGTCG 299
consensus_10628#4      TCA-AATCACAATCGTATAGGATATCTGGTGATAAGTT-TGAATTGGTGGATGTGTTCAG 221
                       *    *     **           *  *     *     *                    

consensus_10628#0      TTCTCACTAAGAC-AGTTGTTTGGATTGTTGTTGCAGTTTACTTGACATCCAAGCTGTCG 833
consensus_10628#5      TTTTCATTAAGAC-AGTTGATTTGAGTGTTGTTGCAGTTTACTTGACATCCAAGTTGTTG 278
consensus_10628#1      TGTAGACGCAAGC-GATTGCCCAACCAACTG--GACAATCATTTAATTGTCGTATCCACA 335
consensus_10628#3      TGTAGATGCAAGC-AATTGCCCAACCACTTG--GACAATTATTTAATTTTCGTATCCACA 358
consensus_10628#2      TGAAAAGACAAGC-GATTGCCCAACCAATTG--GATCTCCATCTAACGGTCTCACCCACA 356
consensus_10628#4      TGGGGACAGATTCCAAGTGGTTCAACGAACACAGAAATTTATGATTTCTATCAATCCAAG 281
                       *    *   *  *    **              *      *                   

consensus_10628#0      CCATGTGTTCCACCCC---ATTGGTGGTGTTCTAGCCAATCCATTATCCAAACACATCAC 890
consensus_10628#5      CCATGTGTTCCACCCC---ATTGGTGGTGTTCTAGCCAATCCATTATTCAAACACATAAC 335
consensus_10628#1      TC-TGTACATCATTTCGTGATTTGATGAATTCCGCCTGATGT-CCACCTCTAT-CCTGAT 392
consensus_10628#3      AC-TGCACATCATTTCGCGATTTGACAAATTCCGCCTGATGT-CCATCTTTAT-CCTGAT 415
consensus_10628#2      TC-TGTACATCATTTTGTGATTTGACGAATTCCGCCTGATGT-CCACCTTTAT-CTTGAT 413
consensus_10628#4      CGGGATAATGATGTATCGAGTTAGACGTGTTCAACAGAAGACTGTTTCTGAAGAAATTGA 341
                                           ** *     ***      *            *    *   

consensus_10628#0      ACAGTTTAGAGTGAGGATGGCTACTCCCGAAACTATTGTTAGCACCGTGAACATATTATA 950
consensus_10628#5      AGAATTCAGAGTGAGGAAGACTACTCCCGAAAATATCGTTAGCACCGTGAACATATTATA 395
consensus_10628#1      CTATCGCCAACAAATGTTTATTGCGTAACAGAGATGCACTGAATTGATCCACCTTGTCCA 452
consensus_10628#3      CTATCCGCAACAAATGTTTGTTAC------------------------------------ 439
consensus_10628#2      CTATCGCCAATAAACGTGCATTACGTAATAAAGATACACTGAAATATCCAAC--TGTCCA 471
consensus_10628#4      TGGACTGTTTCAGACATTGTTATAGCCCTAATTAATCCACATGATTACTTCAGTATCCTA 401
                                    *                                              

consensus_10628#0      ------------------------------------------------------------
consensus_10628#5      TTTCGT------------------------------------------------------ 401
consensus_10628#1      TGTCGGTTGAGATGATTAATGGAGCAGCGAACATACACCACATACCCATATGGACTCGCT 512
consensus_10628#3      ------------------------------------------------------------
consensus_10628#2      TGT--------------------------------------------------------- 474
consensus_10628#4      TGAAATGAACAG------------------------------------------------ 413
                                                                                   

consensus_10628#0      ------------------------------------------------------------
consensus_10628#5      ------------------------------------------------------------
consensus_10628#1      TTTGATCATTGGTAAGTCCGTTGTTTCATAAGACCAACATGTCGGGATCGTTCCAGTGTC 572
consensus_10628#3      ------------------------------------------------------------
consensus_10628#2      ------------------------------------------------------------
consensus_10628#4      ------------------------------------------------------------
                                                                                   

consensus_10628#0      ------------
consensus_10628#5      ------------
consensus_10628#1      CTGGACCAGCCA 584
consensus_10628#3      ------------
consensus_10628#2      ------------
consensus_10628#4      ------------
                                   




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)