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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10651#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 884 fasta sequence
[CTCGAGGGCCAAAATTCGGCACGAGGAAATAGCACAGATTTGATTGTGAACTACCAATTATCTGAAATTCGTAGCTTGTTGAGAAAGGTCAATGGAACGATCGGTTGTGCAAACATTATCCAGAGTCAGTATCCTAGTCCCTTAACAATGAATGATCCTATTCCAAATATTCATGGTAAAGAGGCTGAACCAATACCGTTATTAAAAGACGCATTCTACCAAACGTCCACAAATCTAAGCTTCAACGTGGAGATAAAATATCCCATAGAAACGCCATATAATCTAGTCGCTGAAGAATTAATTAAACATAAACCTGTCGAACCTTCTTTACCAACACCGTCCTCATATTTCTATAAAATCAACAAATTCTGTGATACAATATTAGATACAATATGGTCACACGCTGGACCCAGATACGTTATCCTATCTTCATTTAATCCT-GATATATGCTTAGCTTTAAGGCTAAAGCAATCTTTTTTACCAGTCTTGTTTA-TTTCTCGTGGTGGTTATCCAAATGATAGTAGTCACAAGTCAGATCCACGAC-ATCACAACATATTCTCTGCGACAAGTTGGGCACATATAATGAACTTAAATGGGATTGTTACAGTGGGACATCATTTCGGTTCGACAAATGATGTGGATGACAGGCAGATCAAATCTCTT-GGAGCGGATTTAGAGAGTAAACAGCTATCCTGCTTTGTGTATGGTG-ATGG-TGTGTCTGAAATGAGTTTTTATAGAAAAGCATCACAACTTAATTTGACTGGAGTAATAGTTGACCGATTAGATGAGTTTATGCATATGTACCATGATCAATACAAAACAACACCATTANCGTCTCAACTCTTGATCATTANTGATTTCCAACTGGATTAATTATANACAGT]
[+] EMBL CD080092 [CTCGAGGGCCAAAATTCGGCACGAGGAAATAGCACAGATTTGATTGTGAACTACCAATTATCTGAAATTCGTAGCTTGTTGAGAAAGGTCAATGGAACGATCGGTTGTGCAAACATTATCCAGAGTCAGTATCCTAGTCCCTTAACAATGAATGATCCTATTCCAAATATTCATGGTAAAGAGGCTGAACCAATACCGTTATTAAAAGACGCATTCTACCAAACGTCCACAAATCTAAGCTTCAACGTGGAGATAAAATATCCCATAGAAACGCCATATAATCTAGTCGCTGAAGAATTAATTAAATATAAACCTGTCGAACCTTCTTTACCAACACCGTCCTCATATTTCTATAAAATCAACAAATTCTGTGATACAATATTAGATACAATATGGTCACACGCTGGACCCAGATACGTTATCCTATCTTCATTTAATCCT GATATATGCTTAGCTTTAAGGCTAAAGCAATCTTTTTTACCAGTCTTGTTTATTTTCTCGTGGTGGTTACCCAAATGATAGTAGTCACAAGTCAGATCCACGAC ATCACAACATATTCTCTGCGACAAGTTGGGCACATATAATGAACTTAAATGGGATTGTTACAGTGGGACTCCATTTCGGTTCGACAAATGATGTGGATGACAGGCAGATCANATCTCTTGGGAGCGGATTTAGAGAG AAACAGCTATCCTGCTTTGTGANTGGNGAATGGNTGTGTCTGAAATGAGTTTTTATAGAAAAGCATCACAACTTAATTTGACTGGAGGTATAGTTGACCGATTAGATGAGTTTATGCATATGTACCATGATCAATACAAAACAACACCATTANCGTCTCAACTCTTGATCATTANTGATTTCCAACTGGATTAATTATANACAGT]
[+] EMBL CD140816 [ AGAGGCTGAACCAATACCGTTATTAAAAGACGCATTCTACCAAACGTCCACAAATCTAAGCTTCAACGTGGAGATAAAATATCCCATAGAAACGCCATATAATCTAGTCGCTGAAGAATTAATTAAACATAAACCTGTCGAACCTTCTTTACCAACACCGTCCTCATATTTCTATAAAATCAACAAATTCTGTGATACAATATTAGATACAATATGGTCACACGCTGGACCCAGATACGTTATCCTATCTTCATTTAATCCT GATATATGCTTAGCTTTAAGGCTAAAGCAATCTTTTTTACCAGTCTTGTTTA TTTCTCGTGGTGGTTATCCAAATGATAGTAGTCACAAGTCAGATCCACGAC ATCACAACATATTCTCTGCGACAAGTTGGGCACATATTATGGACTTtag ]
[+] EMBL CD140735 [ AGAGGCTGAACCAATACCGTTATTAAAAGACGCATTCTACCAAACGTCCACAAATCTAAGCTTCAACGTGGAGATAAAATATCCCATAGAAACGCCATATAATCTAGTCGCTGAAGAATTAATTAAACATAAACCTGTCGAACCTTCTTTACCAACACCGTCCTCATATTTCTATAAAATCAACAAATTCTGTGATACAATATTAGATACAATATGGTCACACGCTGGACCCAGATACGTTATCCTATCTTCATTTAATCCT GATATATGCTTAGCTTTAAGGCTAAAGCAATCTTTTTTACCAGTCTTGTTTA TTTCTCGTGGTGGTTATCCAAATGATAGTAGTCACAAGTCAGATCCACGAC ATCACAACATATTCTCTGCGACAAGTTGGGCACATATAATGAA ]
[+] EMBL AI976520 [ CCAAACGTTCACAAATCTAAGCTTCAACGTGGAGATAAAATATCCCATAGAAACGCCATATAATCTAGTCGCTGAAGAATTAATTAAACATAAACCTGTCGAACCTTCTTTACCAACACCGTGCTCATATTTCTATAAAATCAACAAATTCTGTGATACAATATTAGATACAATATGGTCACACGCTGGACCCAGATACGTTATCCTATCTTCATTTAATCCT GATATATGCTTAGCTTTAAGGCTAAAGCAATCTTTTTTACCAGTCTTGTTTA TTTCTCGTGGTGGTTATCCAAATGATAGTAGTCACAAGTCAGATCCACGAC ATCACAACATATTCTCTGCGACAAGTTGGGCACATATAATGAACTTAAATGGGATTGTTACAGTGGGACATCATTTCGGTTCGACAAATGATGTGGATGACAGGCAGATCAAATCTCTT GGAGCGGATTTAGA ]
[+] EMBL BE431249 [ TCTTTACCAACACCGTCCTCATATTTCTATAAAATCAACAAATTCTGTGATACAATATTAGATACAATATGGTCACACGCTGGACCCAGATACGTTATCCTATCTTCATTTAATCCTGGATATATGCTTAGCTTTAAGGCTAAAGCAATCTTTTTTACCAGTCTTGTTTA TTTCTCGTGGTGGTTATCCACATGATAGTAGTCACAAGTCAGATCCACGACGATCACAACATATTCTCTGCGACAAGTTGGGCACATATAATGAACTTAAATGGGATTGTT ]
[-] EMBL CD140839 [ CAACACCGTCCTCATATTTCTATAAAATCAACAAATTCTGTGATACAATATTAGATACAATATGGTCACACGCTGGACCCAGATACGTTATCCTATCTTCATTTAATCCT GATATATGCTTAGCTTTAAGGCTAAAGCAATCTTTTTTACCAGTCTTGTTTA TTTCTCGTGGTGGTTATCCAAATGATAGTAGTCACAAGTCAGATCCACGAC ATCACAACATATTCTCTGCGACAAGTTGGGCACATATAATGAACTTAAATGGGATTGTTACAGTGGGACATCATTTCGGTTCGACAAATGATGTGGATGACAGGCAGATCAAATCTCTT GGAGCGGATTTAGAGAGTAAACAGCTATCCTGCTTTGTGTATGGTG ATGG TGTGTCTGAAATGAGTTTTTATAGAAAAGCATCACAACTTAATTTGACTGGAGTAATAGTTGACCGATTAGATGAGTTTATGC ]
[-] EMBL CD140824 [ CTATCTTCATTTAATCCT GATATATGCTTAGCTTTAAGGCTAAAACAATCTTTTTTACCAGTCTTGTTTA TTTCTCGTGGTGGTTATCCAAATGATAGTAGTCACAAGTCAGATCCACGAC ATCACAACATATTCTCTGCGACAAGTTGGGCACATATAATGAACTTAAATGGGATTGTTGCAGTGGGACATCATTTCGGTTCGACAAATGATGTGGATGACAGGCAGATCAAATCTCTT GGAGCGGATTTAGAGAGTAAACAGCTATCCTGCTTTGTGTATGGTG ATGG TGTGTCTGAAATGAGTTTTTATAGAAAAGCATCACAACTTAATTTGACTGGAGTAATAGTTGACCGATTAGATGGGTTTATGC ]
consensusID : consensus_10651#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 571 fasta sequence
[GCAAATATCACGAAAGATTCTGAAGTTGTTTTACACCACAACTTCACACTAGGAGTATGTGAGTAACCGAGAAAATCTGAAAAAGATCCACAAACTTTCATTTT-AGAGCATAAAACTGATGGTGTAGTAAATGAAAATAGCACAGATTTGATTGTGAACTACCAATTATCTGAAATTCGTAGCTTGTTGAGAAAGGTCAATGGAACGATCGGTTGTGCAAACATTATCCAGAGTCAGTATCCTAGTCCCTTAACAATGAATGATCCTATTCCAAATATTCATGGTAAAGAGGCTGAACCAATACCGTTATTAAAAGACGCATTCTACCAAACGTCCACAAATCTAAGCTTCAACGTGGAGATAAAATATCCCATAGAAACGCCATATAATCTAGTCGCTGAAGAATTAATTAAACATAAACCTGTCGAACCTTCTTTACCAACACCGTCCTCATATTTCTATAAAATCAACAAATTCTGTGATACAATATTAGATACAATATGGTCACACGCTGGACCCAGATACGTTATCCTATCTTCATTTAATCCTGATATATGCTTAGCTTTAAGGC]
[+] EMBL CD114551 [GCAAATATCACGAAAGATTCTGAAGTTGTTTTACACCACAACTTCACACTAGGAGTATGTGAGTAACCGAGAAAATCTGAAAAAGATCCACAAACTTTCATTTT AGAGCATAAAACTGATGGTGTAGTAAATGAAAATAGCACAGATTTGATTGTGAACTACCAATTATCTGAAATTCGTAGCTTGTTGAGAAAGGTCAATGGAACGATCGGTTGTGCAAACATTATCCAGAGTCAGTATCCTAGTCCCTTAACAATGAATGATCCTATTCCAAATATTCATGGTAAAGGGGCTGAACCAATACCGTTATTAAAAGACGCATTCTACCAAACGTCCACAAATCTAAGCTTCAACGTGGAGATAAAATATCCCATAGAAACGCCATATAATCTAGTCGCTGAAGAATTAATTAAACATAAACCTGTC ]
[-] EMBL CD141671 [ cAACCGAGAAAATCTGAAAAAGATCCACAAAC TTCATTTTNAGAGCATAAAACTGATGGTGTAGTAAATGAAAATAGCACAGATTTGATTGTGAACTACCAATTATCTGAAATTCGTAGCTTG TGAGAAAGGTCAATGGAACGATCGGTTGTGCAAACATTATCCAGAGTCAGTATCCTAGTCCCTTAACAATGAATGATCCTATTCCAAATATTCATGGTAAAGAGGCTGAACCAATACCGTTATTAAAAGACGCATTCTACCAAACGTCCACAAATCTAAGCTTCAACGTGGAGATAAAATATCCCATAGAAACGCCATATAATCTAGTCGCTGAAGAATTAATT ]
[+] EMBL CD068645 [ TCATTTT AGAGCATAAAACTGATGGTGTAGTAAATGAAAATAGCACAGATTTGATTGTGAACTACCAATTATCTGAAATTCGTAGCTTGTTGAGAAAGGTCAATGGAACGATCGGTTGTGCAAACATTATCCAGAGTCAGTATCTTAGTCCCTTAACAATGAATGATCCTATTCCAAATATTCATGGTAAAGAGGCTGAACCAATACCGTTATTAAAAGACGCATTCTACCAAACGTCCACAAATCTAAGCTTCAACGTGGAGATAAAATATCCCATAGAAACGCCATATAATCTAGTCGCTGAAGAATTAATTAAACATAAACCTGTCGAACCTTCTTTACCAACACCGTCCTCATATTTCTATAAAATCAACAAATTCTGTGATACAATATTAGATACAATATGGTCACACGCTGGACCCAGATACGTTATCCTATCTTCATTTAATCCTGATATATGCTTAGCTTTAAGGC]
[+] EMBL CD143442 [ AAATAGCACAGATTTGATTGTGAACTACCAATTATCTGAAATTCGTAGCTTGTTGAGAAAGGTCAATGGAACGATCGGTTGTGCAAACATTATCCAGAGTCAGTATCCTAGTCCCTTAACAATGAATGATCCTATTCCAAATATTCATGGTAAAGAGGCTGAACCAATACCGTTATTAAAAGACGCATTCTACCAAACGTCCACAAATCTAAGCTTCAACGTGGAGATAAAATATCCCATAGAAACGCCATATAATCTAGTCGCTGAAGAATTAATTAAACATAAACCTGTCGAACC ]
[+] EMBL CD143464 [ AAATAGCACAGATTTGATTGTGAACTACCAATTATCTGAAATTCGTAGCTTGTTGAGAAAGGTCAATGGAACGATCGGTTGTGCAAACATTATCCAGAGTCAGTATCCTAGTCCCTTAACAATGAATGATCCTATTCCAAATATTCATGGTAAAGAGGCTGAACCAATACCGTTATTAAAAGACGCATTCTACCAAACGTCCACAAATCTAAGCTTCAACGTGGAGATAAAATATCCCATAGAAACGCCATATAATCTAGTCGCTGAAGAATTAATTAAACATAAACCTGTCGAACC ]
[+] EMBL CD143456 [ AAATAGCACAGATTTGATTGTGAACTACCAATTATCTGAAATTCGTAGCTTGTTGAGAAAGGTCAATGGAACGATCGGTTGTGCAAACATTATCCAGAGTCAGTATCCTAGTCCCTTAACAATGAATGATCCTATTCCAAATATTCATGGTAAAGAGGCTGAACCAATACCGTTATTAAAAGACGCATTCTACCAAACGTCCACAAATCTAAGCTTCAACGTGGAGATAAAATATCCCATAGAAACGCCATATAATCTAGTCGCTGAAGAATTAATTAAACATAAACCTGTCGAACC ]
[+] EMBL CD143526 [ AAATAGCACAGATTTGATTGTGAACTACCAATTATCTGAAATTCGTAGCTTGTTGAGAAAGGTCAATGGAACGATCGGTTGTGCAAACATTATCCAGAGTCAGTATCCTAGTCCCTTAACAATGAATGATCCTATTCCAAATATTCATGGTAAAGAGGCTGAACCAATACCGTTATTAAAAGACGCATTCTACCAAACGTCCACAAATCTAAGCTTCAACGTGGAGATAAAATATCCCATAGAAACGCCATATAATCTAGTCGCTGAAGAATTAATTAAACATAAACCTGTCGAACC ]
[+] EMBL CD143566 [ AAATAGCACAGATTTGATTGTGAACTACCAATTATCTGAAATTCGTAGCTTGTTGAGAAAGGTCAATGGAACGATCGGTTGTGCAAACATTATCCAGAGTCAGTATCCTAGTCCCTTAACAATGAATGATCCTATTCCAAATATTCATGGTAAAGAGGCTGAACCAATACCGTTATTAAAAGACGCATTCTACCAAACGTCCACAAATCTAAGCTTCAACGTGGAGATAAAATATCCCATAGAAACGCCATATAATCTAGTCGCTGAAGAATTAATTAAACATAAACCTGTCGAACC ]
[-] EMBL CD143541 [ AATAGCACAGATTTGATTGTGAACTACCAATTATCTGAAATTCGTAGCTTGTTGAGAAAGGTCAATGGAACGATCGGTTGTGCAAACATTATCCAGAGTCAGTATCCTAGTCCCTTAACAATGAATGATCCTATTCCAAATATTCATGGTAAAGAGGCTGAACCAATACCGTTATTAAAAGACGCATTCTACCAAACGTCCACAAATCTAAGCTTCAACGTGGAGATAAAATATCCCATAGAAACGCCATATAATCTAGTCGCTGAAGAATTAATTAAACATAAACCTGTCGAACCT ]
[-] EMBL CD143449 [ AATAGCACAGATTTGATTGTGAACTACCAATTATCTGAAATTCGTAGCTTGTTGAGAAAGGTCAATGGAACGATCGGTTGTGCAAACATTATCCAGAGTCAGTATCCTAGTCCCTTAACAATGAATGATCCTATTCCAAATATTCATGGTAAAGAGGCTGAACCAATACCGTTATTAAAAGACGCATTCTACCAAACGTCCACAAATCTAAGCTTCAACGTGGAGATAAAATATCCCATAGAAACGCCATATAATCTAGTCGCTGAAGAATTAATTAAACATAAACCTGTCGAACCT ]
[-] EMBL CD143540 [ AATAGCACAGATTTGATTGTGAACTACCAATTATCTGAAATTCGTAGCTTGTTGAGAAAGGTCAATGGAACGATCGGTTGTGCAAACATTATCCAGAGTCAGTATCCTAGTCCCTTAACAATGAATGATCCTATTCCAAATATTTATGGTAAAGAGGCTGAACCAATACCGTTATTAAAAGACGCATTCTACCAAACGTCCACAAATCTAAGCTTCAACGTGGAGATAAAATATCCCATAGAAACGCCACATAATCTAGTCGCTGAAGAATTAATTAAACATAAACCTGTCGAACCT ]
[-] EMBL CD143568 [ AATAGCACAGATTTGATTGTGAACTACCAATTATCTGAAATTCGTAGCTTGTTGAGAAAGGTCAATGGAACGATCGGTTGTGCAAACATTATCCAGAGTCAGTATCCTAGTCCCTTAACAATGAATGATCCTATTCCAAATATTCATGGTAAAGAGGCTGAACCAATACCGTTATTAAAAGACGCATTCTACCAAACGTCCACAAATCTAAGCTTCAACGCGGAGATAAAATATCCCATAGAAACGCCATATAATCTAGTCGCTGAAGAATTAATTAAACATAAACCTGTCGAACCT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10651#0 ------------------------------------------------------------
consensus_10651#1 GCAAATATCACGAAAGATTCTGAAGTTGTTTTACACCACAACTTCACACTAGGAGTATGT 60
consensus_10651#0 ------------------------------------------------CTCGAGGGCCAA 12
consensus_10651#1 GAGTAACCGAGAAAATCTGAAAAAGATCCACAAACTTTCATTTTAGAGCATAAAACTGAT 120
* * *
consensus_10651#0 AATTCGGCACGAGGAAATAGCACAGATTTGATTGTGAACTACCAATTATCTGAAATTCGT 72
consensus_10651#1 GGTGTAGTAAATGAAAATAGCACAGATTTGATTGTGAACTACCAATTATCTGAAATTCGT 180
* * * * **********************************************
consensus_10651#0 AGCTTGTTGAGAAAGGTCAATGGAACGATCGGTTGTGCAAACATTATCCAGAGTCAGTAT 132
consensus_10651#1 AGCTTGTTGAGAAAGGTCAATGGAACGATCGGTTGTGCAAACATTATCCAGAGTCAGTAT 240
************************************************************
consensus_10651#0 CCTAGTCCCTTAACAATGAATGATCCTATTCCAAATATTCATGGTAAAGAGGCTGAACCA 192
consensus_10651#1 CCTAGTCCCTTAACAATGAATGATCCTATTCCAAATATTCATGGTAAAGAGGCTGAACCA 300
************************************************************
consensus_10651#0 ATACCGTTATTAAAAGACGCATTCTACCAAACGTCCACAAATCTAAGCTTCAACGTGGAG 252
consensus_10651#1 ATACCGTTATTAAAAGACGCATTCTACCAAACGTCCACAAATCTAAGCTTCAACGTGGAG 360
************************************************************
consensus_10651#0 ATAAAATATCCCATAGAAACGCCATATAATCTAGTCGCTGAAGAATTAATTAAACATAAA 312
consensus_10651#1 ATAAAATATCCCATAGAAACGCCATATAATCTAGTCGCTGAAGAATTAATTAAACATAAA 420
************************************************************
consensus_10651#0 CCTGTCGAACCTTCTTTACCAACACCGTCCTCATATTTCTATAAAATCAACAAATTCTGT 372
consensus_10651#1 CCTGTCGAACCTTCTTTACCAACACCGTCCTCATATTTCTATAAAATCAACAAATTCTGT 480
************************************************************
consensus_10651#0 GATACAATATTAGATACAATATGGTCACACGCTGGACCCAGATACGTTATCCTATCTTCA 432
consensus_10651#1 GATACAATATTAGATACAATATGGTCACACGCTGGACCCAGATACGTTATCCTATCTTCA 540
************************************************************
consensus_10651#0 TTTAATCCTGATATATGCTTAGCTTTAAGGCTAAAGCAATCTTTTTTACCAGTCTTGTTT 492
consensus_10651#1 TTTAATCCTGATATATGCTTAGCTTTAAGGC----------------------------- 571
*******************************
consensus_10651#0 ATTTCTCGTGGTGGTTATCCAAATGATAGTAGTCACAAGTCAGATCCACGACATCACAAC 552
consensus_10651#1 ------------------------------------------------------------
consensus_10651#0 ATATTCTCTGCGACAAGTTGGGCACATATAATGAACTTAAATGGGATTGTTACAGTGGGA 612
consensus_10651#1 ------------------------------------------------------------
consensus_10651#0 CATCATTTCGGTTCGACAAATGATGTGGATGACAGGCAGATCAAATCTCTTGGAGCGGAT 672
consensus_10651#1 ------------------------------------------------------------
consensus_10651#0 TTAGAGAGTAAACAGCTATCCTGCTTTGTGTATGGTGATGGTGTGTCTGAAATGAGTTTT 732
consensus_10651#1 ------------------------------------------------------------
consensus_10651#0 TATAGAAAAGCATCACAACTTAATTTGACTGGAGTAATAGTTGACCGATTAGATGAGTTT 792
consensus_10651#1 ------------------------------------------------------------
consensus_10651#0 ATGCATATGTACCATGATCAATACAAAACAACACCATTANCGTCTCAACTCTTGATCATT 852
consensus_10651#1 ------------------------------------------------------------
consensus_10651#0 ANTGATTTCCAACTGGATTAATTATANACAGT 884
consensus_10651#1 --------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||