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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10655#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1362 fasta sequence
[CNAGGCCAANAATTTGGCACGAGGATCGAAGGAATTTTGGTATTCTATTCACAAGCTGTGGCCAAACTAATGGATTTGAAGGTGTTTGTTGATACAGACGCAGATGAACGCTTATCTCGTCGTCTTCGTCGTGATATTAGTGAACGTGGTAGAGAATTGAATAGCGTACTAGAACAATATATGCGCTTTGTCAAACCTTCCTATGAACAATTTATTGCTCCAAGCATGGCTCAAGCAGATATTATTGTTCCAAGAGGTGGAAAAAATGTTGTCGCTCTGCAACTTATCGTTCAACACATCAATAAACGTCTAAAACAGTGTGGACTACGAACCAGACATAAATTTGCCAAATTCCCATTCATACTTCCTAATGGTGCATTACCAACAGATTCTAACGATGCAACTTGGGAGGATAATAATTCAACTGGTGTAAATAATACAGTAGATGATGTTTTTACAATGAACAACCATCTGTACAATAACAAGCAATATACTACTAATGGTACATCTGATAAAGCATGTCTCCCACCTCGAGTTCATGTATTGCCTTCCACACCTCAAAGACTTGGTCTGCATACATTAATTCGTGATCAAAGCACCGATCAAGATGCATTTGTTTTCTATGCTGAACGTTTGATGCGTCCTTTATGTGAAGCTGCAATGAATCTACTTCCTCATATGGATA-AGATATCGAGACTCCTCAGGGTATCACTTATCGTGGTCGGGAATTAGCTACGGGCANTCAAGTATGTGGTGTATCTATTNTAATAGCAGGTGAAGTACTTGAACGGGCTCTATGCGCTGTGTGTANAGACATTCGTTTGGGCAAAATTNTGATACAAACCAATCCAGTCACATCTGAACCTGAATTACACTACATTCGTTTACCTCGAGATATTAAGGACTGTTTTGTTATACTCATGGATGCTACTGTGGCTACTGGAGCGGCTGCTATAATGGCTATGCGTATATTAGTGGAACATGATGTACCGGAAGATAAAATTATTCTCATCTCCTTAATAATGGCTAGTCAAGGTGTACATTCTGTTGCTTATACATATCCAAAGGCTCACATTGTAACTACTGCTGTAGATTCAGGCTTAAATGATAGTTATCACATTGTTCCAGGTGTTGGAAATTTCGGTGACCGCTATTTTGGTACTACTTTGGATCTAGAAACAAGATAACGAAATCTGATTGCTTCTTTTCTTCATAATATTCTGCAACACTTCTGCCAATCTGAGTGAATTACATAGTCAGGAGCCTTTTTGATTGGTTTTAGTCTGATTTTTAATTAATTCTTTCCTTTAAAAAGTTTTTATTTTGTTCTTCTGACAAACATTTTGTGGAAATTTGCTTTCA]
[+] EMBL CD080831 [CNAGGCCAANAATTTGGCACGAGGATCGAAGGAATTTTGGTATTCTATTCACAAGCTGTGGCCAAACTAATGGATTTGAAGGTGTTTGTTGATACAGACGCAGATGAACGCTTATCTCGTCGTCTTCGTCGTGATATTAGTGAACGTGGTAGAGAATTGAATAGCGTACTAGAACAATATATGCGCTTTGTCAAACCTTCCTATGAACAATTTATTGCTCCAAGCATGGCTCAAGCAGATATTATTGTTCCAAGAGGTGGAAAAAATGTTGTCGCTCTGCAACTTATCGTTCAACACATCAATAAACGTCTAAAACAGTGTGGACTACGAACCAGACATAAATTTGCCAAATTCCCATTCATACTTCCTAATGGTGCATTACCAACAGATTCTAACGATGCAACTTGGGAGGATAATAATTCAACTGGTGTAAATAATACAGTAGATGATGTTTTTACAATGAACAACCATCTGTACAATAACAAGCAATATACTACTAATGGTACATCTGATAAAGCATGTCTCCCACCTCGAGTTCATGTATTGCCTTCCACACCTCAAAGACTTGGTCTGCATACATTAATTCGTGATCAAAGCACCGATCAAGATGCATTTGTTTTCTATGCTGAACGTTTGATGCGTCCTTTATGTGAAGCTGCAATGAATCTACTTCCTCATATGGATATAGATATCGAGACTCCTCAGGGTATCACTTATCGTGGTCGGG ]
[+] EMBL CD179990 [ GACATAAATTTGCCAAATTCCCATTCATACTTCCTAATGGTGCATTGCCAACAGATTCTAACGATGCAACTTGGGAGGATAATAATTCAACTGGTGTAAATAATACAGTAGATGATGTTTTTACAATGAACAACCATCTGTACAATAACAAGCAATATACTACTAATGGTACATCTGATAAAGCATGTCTCCCACCTCGAGTTCATGTATTGCCTTCCACACCTCAAAGACTTGGTCTGCATACATTAATTCGTGATCAAAGCACCGATCAAGATGCATTTGTTTTCTATGCTGAACGTTTGATGCGTCCTTTATGTGAAGCTGCAATGAATCTACTTNCTCATAT GATATCGAGACTCCTC ]
[-] EMBL CD194647 [ ACTTCTTCATATGGATA AGATATCGAGACTCCTCAGGGTATCAC TATCGTGGTCGGAAATTAGCTACGGGCANTCAAGTATGTGGTGTATCTATTNTAATAGCAGGTGAAGTACTTGAACGGGCTCTATGCGCTGTGTGTANAGACATTCGTTTGGGCAAAATTNTGATACAAACCAATCCAGTCACATCTGAACCTGAATTACACTACATTCGTTTACCTCGAGATATTAAGGACTGTTTTGTTATACTCATGGATGCTACTGTGGCTACTGGAGCGGCTGCTATAATGGCTATGCGTATATTAGTGGAACATGATGTACCGGAAGATAAAATTATTCTCATCTCCTTAATAATGGCTAGTCAAGGTGTACATTCTGTTGCTTATACATATCCAAAGGCTCACATTGTAACTACTGCTGTAGATTCAGGCTTAAATGATAGTTATCACATTGTTCCAGGTGTTGGAAATTTCGGTGACCGCTATTTTGGTACTACTTTGGATCTAGAAACAAGATAACGAAATCTGATTGCTTCTTTTCTTCATAATATTCTGCAACACTTCTGCCAATCTGAGTGAATTACATAGTCAGGAGCCTTTTTGATTGGTTTTAGTCTGATTTTTAATTAATTCTTTCCTTTAAAAAGTTTTTATTTTGTTCTTCTGACAAACATTTTGTGGAAATTTGCTTTCA]
[+] EMBL CD066813 [ ATAATGGCTATGCGTATATTAGTGGAACATGATGTACCGGAAGATAAAATTATTCTCATCTCCTTAATAATGGCTAGTCAAGGTGTACATTCTGTTGCTTATACATATCCAAAGGCTCACATTGTAACTACTGCTGTAGATTCAGGCTTAAATGATAGTTATCACATTGTTCCAGGTGTTGGAAATTTCGGTGACCGCTATTTTGGTACTACTTTGGATCTAGAAACAAGATAACGAAATCTGATTGCTTCTTTTCTTCATAATATTCTGCAACACTTCTGCCAATCTGAGTGAATTACATAGTCAGGAGCCTTTTTGATTGGTTTTAGTCTGATTTTTAATTA ]
consensusID : consensus_10655#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1233 fasta sequence
[TCTNGCGCTTTGTGGAAAGACATCGTTGGGCAAAATTTTGATACAAACCAATCCAGTCACATCTGAACCTGAATTACACTACATTCGTTTACCTCTTTTTTTTTTTTTTTTTTTAAAAGATGTCAAAAAATGTATTTAAATATAAAGAAAGTTTAAAATTCTTGCTTACAAGCTCATTTTTAATTACACATTATTCAAAAGGTTTACATTTAGAGTATAATCAAAGCATCTCGTGATATTCTTCTTAATCAAAACTCAACATGGTTTAAACAGAAACCAGAAGATGGGTGTCCTCTTTAATAATAGTACCCATCGTTCGTATTCCTTGTATGGTAAATCTGAACCCTTGGGTATGTACGCGGAGAATATGAAAGTGTATTGCCATTATTGGAAATCGTGTCGGGATCTATCAGACGATTGTTAGATATCGAACGACGAAGTGGATACGGCGAATAGGTGCTTGGAACGTACGCATCCCCAACAGATGCGCGATATGATGGATAAACGGGCTGATAAGAAACGGGCTGAGCATAACTATGACGCTGATAACTATTTGGCATANGGC-CCGGATAAAGTGTTTCTGTAGGCTGGTAAACTGAAGGCGGACGAACGTAGTAGGACTCACGAGGCCTAGCATAATATGTTTCTACAGGCTGATATACAGAGGGCGGACGTGAGTAGAAGTCGTCATAATTTGGTTGATAGGGCCGAAATAGAAATATCTTATATCCAATAATCACGATATATGTTATGTGATTAAGTTTTCAAGAATGTGGTTTGCAGTTGAGTTACAATAAAAAGGATGAAATTGTTTTATCTCAAACTAAATAAAATGTATAGAGTAAATACAATTAGCGAAATCTGAAACTAAATGATTAAAGTGAAAACGTCATCAAACAGCGGCACTGAAAAAACTGTTGAATGGAAAAAATAAAATATATTTGCCATAAATATTTGTTATTCTGGCCTTCTAAATGGAAGTTAGGGGAATTCGTGACAATTATTTACAATATTTTGTTATTTTTTCCATTTGAAAACATTTAAGCTCGTACCGAAAAAACTTACCTTGAGTGTCTTGATCCCCGATAATTATAGCGATAGTCATCCCTAATCCGATCATCCAAAGTTCTAGGATGTAAATAACCTGGAGTTGTATGACTTCTCCGACGACATGACATTTGTAGCACCTGTCAGAAATAGTACCACCTCGTGCCGAATTNTTGGCTCGGAGGG]
[-] EMBL AA999339 [TCTNGCGCTTTGTGGAAAGACATCGTTGGGCAAAATTTTGATACAAACCAATCCAGTCACATCTGAACCTGAATTACACTACATTCGTTTACCTCGAGTTTTTTTTTTTTTTTTTAAAGATGTCAAAAAATGTATTTAAATATAAAGAAAGTTTAAAATTCTTGCTTACAAGCTCATTTTTAATAACACATTATTCAAAAGGTTTACATTTAGAGTATAATCAAAGCATCTCGTGATATTCTTCTTAATCAAAACTCAACATGGTTTGAACAGAAACCAGAAGATGGGTGTCCTCTTTAATAATAGTACCCATCGTTCGTATTCCTTGTATGGTAAATCTGAACCCTTGGGTATGTACGCGGAGAATATGAAAGTGTATTGCCATTATTGGAAATCGTGTCGGGATCTATCAGACGATTGTTAGATATCGAACGACGAAGTGGATACGGCGAATAGGTGCTTGGAACGTACGCATCCCCAACAGATGCGCGATATGATGGATAAACGGGCTGAT ]
[+] EMBL AI395708 [ ttttttTTTTTTTTTTTTGTTTTTTAAAAGATGTCAAAAAATGTATTTAAATATAAAGAAAGTTTAAAATTCTTGCTTACAAGCTCATTTTTAATTACACATTATTCAAAAGGTTTACATTTAGAGTATAATCAAAGCATCTCGTGATATTCTTCTTAATCAAAACTCAACATGGTTTAAACAGAAACCAGAAGATGGGTGTCCTCTTTAATAATAGTACCCATCGTTCGTATTCCTTGTATGGTAAATCTGAACCCTTGGGTATGTACGCGGAGAATATGAAAGTGTATTGCCATTATTGGAAATCGTGTCGGGATCTATCAGACGATTGTTAGATATCGAACGACGAAGTGGATACGGCGAATAGGTGCTTGGAACGTACGCATCCCCAACAGATGCGCGATATGATGGATAAACGGGCTGATAAGAAACGGGCTGAGCATAACTATGACGCTGATAACTATTTGGCATANNGC CC ]
[+] EMBL AI395786 [ TTTTTTTTTTTTTTTTTTTAAAAGATGTCAAAAAATGTATTTAAATATAAAGAAAGTTTAAAATTCTTGCTTACAAGCTCATTTTTAATTACACATTATTCAAAAGGTTTACATTTAGAGTATAATCAAAGCATCTCGTGATATTCTTCTTAATCAAAACTCAACATGGTTTAAACAGAAACCAGAAGATGGGTGTCCTCTTTAATAATAGTACCCATCGTTCGTATTCCTTGTATGGTAAATCTGAACCCTTGGGTATGTACGCGGAGAATATGAAAGTGTATTGCCATTATTGGAAATCGTGTCGGGATCTATCAGACGATTGTTAGATATCGAACGACGAAGTGGATACAGCGAATAAGTGCTTGGGACGTACGCAT CCCAAGAGATGCGC ]
[+] EMBL AI395495 [ TTTTTTTTTTTTTTTTTAAAAAGATGTCAAAAAATGTATTTAAATATAAAGAAAGTTTAAAATTCTTGCTTACAAGCTCATTTTTAATTACACATTATTCAAAAGGTTTACATTTAGAGTATAATCAAAGCATCTCGTGATATTCTTCTTAATCAAAACTCAACATGGTTTAAACAGAAACCAGAAGATGGGTGTCCTCTTTAATAATAGTACCCATCGTTCGTATTCCTTGTATGGTAAATCTGAACCCTTGGGTATGTACGCGGAGAATATGAAAGTGTATTGCCATTATTGGAAATCGTGTCGGGATCTATCAGACGATTGTTAGATATCGAACGACGAAGTGGATACGGCGAATAGGTGCTTGGAACGTACGCACCCCCAACAGATGCGCGATATGATGGGAAAACGGGCTGga ]
[+] EMBL CD075609 [ AAGCTCATTTTTAATTACACATTATTCAAAAGGTTTACATTTAGAGTATAATCAAAGCATCTCGTGATATTCTTCTTAATCAAAACTCAACATGGTTTAAACAGAAACCAGAAGATGGGTGTCCTCTTTAATAATAGTACCCATCGTTCGTATTCCTTGTATGGTAAATCTGAACCCTTGGGTATGTACGCGGAGAATATGAAAGTGTATTGCCATTATTGGAAATCGTGTCGGGATCTATCAGACGATTGTTAGATATCGAACGACGAAGTGGATACGGCGAATAGGTGCTTGGAACGTACGCATCCCCAACAGATGCGCGATATGATGGATAAACGGGCTGATAAAAAACGGGCTGAGCATAACTATGACGCTGATAACTATTTGGCATAGGCC CCGGATAAAGTGTTTCTGTAGGCTGGTAAACTGAAGGCGGACGAACGTAGTAGGACTCACGAGGCCTAGCATAATATGTTTCTACAGGCTGATATACAGAGGGCGGACGTGAGTAGAAGTCGTCATAATTTGGTTGATAGGGCCGAAATAGAAATATCTTA ]
[-] EMBL CD081997 [ GAAACGGGCTGAGCATAACTATGACGCTGATAACTATTTGGCATA GGCNCCGGATANAGTGTTTCTGTAGGCTGGTAAACTGAAGGCGGACGAACGTAGTAGGACTCACGAGGCCTAGCATAATATGTTTCTACAGGCTGATATACAGAGGGCGGACGTGAGTAGAAGTCGTCATAATTTGGTTGATAGGGCCGAAATAGAAATATCTTATATCCAATAATCACGATATATGTTATGTGATTAAGTTTTCAAGAATGTGGTTTGCAGTTGAGTTACAATAAAAAGGATGAAATTGTTTTATCTCAAACTAAATAAAATGTATAGAGTAAATACAATTAGCGAAATCTGAAACTAAATGATTAAAGTGAAAACGTCATCAAACAGCGGCACTGAAAAAACTGTTGAATGGAAAAAATAAAATATATTTGCCATAAATATTTGTTATTCTGGCCTTCTAAATGGAAGTTAGGGGAATTCGTGACAATTATTTACAATATTTTGTTATTTTTTCCATTTGAAAACATTTAAGCTCGTACCGAAAAAACTTACCTTGAGTGTCTTGATCCCCGATAATTATAGCGATAGTCATCCCTAATCCGATCATCCAAAGTTCTAGGATGTAAATAACCTGGAGTTGTATGACTTCTCCGACGACATGACATTTGTAGCACCTGTCAGAAATAGTACCACCTCGTGCCGAATTNTTGGCTCGGAGGG]
consensusID : consensus_10655#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 727 fasta sequence
[GGACAAACTCAACAGCCTTTTGTAATCGGTATATGTGGAGGTAGTGCAAGCGGTAAAACATCTGTTGCCCGCGTAATTATTGAAAGTCTGGATGTACAGTGGGTCAGTTTATTAAGTTTGGACTCATACTACAAGGTTCTTACTCCAGAGCAAAAACTTCAAGCTGTTGCTTGTCATTATAATTTCGATCATCCAAGCGCTTTTGATCTTGATTTATTAGAAAATCATTTACGTAGGTTACGCGACGGTAAAACAATTGAAGTACCTGAATATGATTTCAAAACTCATTCTCGTACTTCTAAGACGAATACTGTCTACGGGGCTAATATTATTATCATTGAAGGAATTTTGGTATTCTATTCACAAGCTGTGGCCAAACTAATGGATTTGAAGGTGTTTGTTGATACAGACGCAGATGAACGCTTATCTCGTCGTCTTCGTCGTGATATTAGTGAACGTGGTAGAGAATTGAATAGCGTACTAGAACAATATATGCGCTTTGTCAAACCTTCCTATGAACAATTTATTGCTCCAAGCATGGCTCAAGCAGATATTATTGTTCCAAGAGGTGGAAAAAATGTTGTCGCTCTGCAACTTATCGTTCAACACATCAATAAACGTCTAAAACAGTGTGGACTACGAACCAGACATAAATTTGCCAAATTCCCATTCATACTTCCTAATGGTGCATTACCAACAGATTCTAACGATGCAACTTGGGAGGATA]
[+] EMBL CD097112 [GGACAAACTCAACAGCCTTTTGTAATCGGTATATGTGGAGGTAGTGCAAGCGGTAAAACATCTGTTGCCCGCGTAATTATTGAAAGTCTGGATGTACAGTGGGTCAGTTTATTAAGTTTGGACTCATACTACAAGGTTCTTACTCCAGAGCAAAAACTTCAAGCTGTTGCTTGTCATTATAACTTCGATCATCCAAGCGCTTTTGATCTTGATTTATTAGAAAATCATTTACGTAGGTTACGCGACGGTAAAACAATTGAAGTACCTGAATATGATTTCAAAACTCATTCTCGTACT ]
[-] EMBL CD097061 [ GACAAACTCAACAGCCTTTTGTAATCGGTATATGTGGAGGTAGTGCAAGCGGTAAAACATCTGTTGCCCGCGTAATTATTGAAAGTCTGGATGTACAGTGGGTCAGTTTATTAAGTTTGGACTCATACTACAAGGTTCTTACTCCAGAGCAAAAACTTCAAGCTGTTGCTTGTCATTATAATTTCGATCATCCAAGCGCTTTTGATCTTGATTTATTAGAAAATCATTTACGTAGGTTACGCGACGGTAAAACAATTGAAGTACCTGAATATGATTTCAAAACTCATTCTCGTACTT ]
[-] EMBL CD097103 [ GACAAACTCAACAGCCTTTTGTAATCGGTATATGTGGAGGTAGTGCAAGCGGTAAAACATCTGTTGCCCGCGTAATTATTGAAAGTCTGGATGTACAGTGGGTCAGTTTATTAAGTTTGGACTCATACTACAAGGTTCTTACTCCAGAGCAAAAACTTCAAGCTGTTGCTTGTCATTATAATTTCGATCATCCAAGCGCTTTTGATCTTGATTTATTAGAAAATCATTTACGTAGGTTACGCGACGGTAAAACAATTGAAGTACCTGAATATGATTTCAAAACTCATTCTCGTACTT ]
[-] EMBL CD163049 [ AATTGAAGTACCTGAATATGATTTCAAAACTCATTCTCGTACTTCTAAGACGAATACTGTCTACGGGGCTAATATTATTATCATTGAAGGAATTTTGGTATTCTATTCACAAGCTGTGGCCAAACTAATGGATTTGAAGGTGTTTGTTGATACAGACGCAGATGAACGCTTATCTCGTCGTCTTCGTCGTGATATTAGTGAACGTGGTAGAGAATTGAATAGCGTACTAGAACAATATATGCGCTTTGTCAAACCTTCCTATGAACAATTTATTGCTCCAAGCATGGCTCAAGCAGATATTATTGTTCCAAGAGGTGGAAAAAATGTTGTCGCTCTGCAACTTATCGTTCAACACATCAATAAACGTCTAAAACAGTGTGGACTACGAACCAGACATAAATTTGCCAAATTCCCATTCATACTTCCTAATGGTGCATTACCAACAGATTCTAACGATGCAACTTGGGAGGATA]
[+] EMBL CD202195 [ AATTTTGGTATTCTATTCACAAGCTGTGGCCAAACTAATGGATTTGAAGGTGTTTGTTGATACAGACGCAGATGAACGCTTATCTCGTCGTCTTCGTCGTGATATTAGTGAACGTGGTAGAGAATTGAATAGCGTACTAGAACAATATATGCGCTTTGTCAAACCTTCCTATGAACAATTTATTGCTCCAAGCATGGCTCAAGCAGATATTATTGTTCCAAGAGGTGGAAAAAATGTTGTCGCTCTGCAACTTATCGTTCAACACATCAATAAACGTCTAAAACAGTGTGGACTACGAACCAGACATAAATTTGCCAAATTCCCATTCATACTTCCTAAT ]
consensusID : consensus_10655#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 514 fasta sequence
[ACGAGGACTATTTCTGACAGGTGCTACAAATGTCATGTCGTCGGAGAAGTCATACAACTCCAGGTTATTTACATCCTAGAACTTTGGATGATCGGATTAGGGATGACTATCGCTATAATTATCGGGGATCAAGACACTCAAGGCCCTATCAACCAAATTATGACGACTTCTACTCACGTCCGCCCTCTGTATATCAGCCTGTAGAAACATATTATGCTAGGCCTCGTGAGTCCTACTACGTTCGTCCGCCTTCAGTTTACCAGCCTACAGAAACACTTTATCCGGGGCCTATGCCAAATAGTTATCAGCGTCATAGTTATGCTCAGCCCGTTTCTTATCAGCCCGTTTATCCATCATATCGCGCATCTGTTGGGGATGCGTACGTTCCAAGCACCTATTCGCCGTATCCACTTCGTCGTTCGATATCTAACAATCGTCTGATAGATCCCGACACGATTTCCAATAATGGCAATACACTTTCATATTCTCCGCGTACATACCCAAGGGTTCAGAT]
[+] EMBL CD083518 [ACGAGGACTATTTCTGACAGGTGCTACAAATGTCATGTCGTCGGAGAAGTCATACAACTCCAGGTTATTTACATCCTAGAACTTTGGATGATCGGATTAGGGATGACTATCGCTATAATTATCGGGGATCAAGACACTCAAGGCCCTATCAACCAAATTATGACGACTTCTACTCACGTCCGCCCTCTGTATATCAGCCTGTAGAAACATATTATGCTAGGCCTCGTGAGTCCTACTACGTTCGTCCGCCTTCAGTTTACCAGCCTACAGAAACACTTTATCCGGGGCCTATGCCAAATAGTTATCAGCGTCATAGTTATGCTCAGCCCGTTTCTTATCAGCCCGTTTATCCATCATATCGCGCATCTGTTGGGGATGCGTACGTTCCAAGCACCTATTCGCCGTATCCACTTCGTCGTTCGATATCTAACAATCGTCTGATAGATCCCGACACGATTTCCAATAATGGCAATACACTTTCATATTCTCCGCGTACATACCCAAGGGTTCAGAT]
[+] EMBL AA559582 [ ATCCTAAAACTTTGGATGATCGGATTAGGGACNACTATCGCTATAATTATCGGGGATCAAGACACTCAAGGCCCTATCAACCAAATTATGACNACTTCTACTCACGTCCGCCCTCTGTATATCAACCTGTANAAACATATTATGCTAGGCCTCGTGAGTCCTACTACGTTCGTCCGCCTTCAGTTTACCAGCCTACAGAAACACTTTATCCGGGGCCTATGCCAAATAGTTATCAGCGTCATAGTTATGCTCAGCCCGTTTCTTATCAGCCCGTTTATCCATCATATCGCGCATCTGTTGGGGATGCNTAC ]
consensusID : consensus_10655#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 477 fasta sequence
[CATGTATTCGTGGTACTATTTNTGACAGGTGCTACAAATGTGATGTCGGCGNAGAAGTCATACAACTCCAGGTTATTTACATNCTACAACTTTGGATGATCGGATTANGGATGACTATNGNTATAATTATNGGGGATCAANACACTCNAGGCCCTATCAACCAAATTATGACNACTTCTACTCACNTCCGCCCTNTGTATATCAGNCTGNANAAACATATTATGCTAGGTCACATATTTTGTGTATTTNTGATGCCTNNGGAGTNCTACTACGTTCGNCCGCCTTCAGTTTACCAGCCTANANAAACACTTTATNCGGGGCCTATGCCAAATANTTATCAGCGTCATAGTTATGCTCANCCCGTTTNTTATCANCCCGTTTATCCATNATATCNNGCATCTGNGGGGGATGCGTACGTTCCAAGCACCTATTCGCCGTATCCACTTCGTCGNTCGATATCTAACAATCGNCTGATAG]
[+] EMBL BE449145 [CATGTATTCGTGGTACTATTTNTGACAGGTGCTACAAATGTGATGTCGGCGNAGAAGTCATACAACTCCAGGTTATTTACATNCTACAACTTTGGATGATCGGATTANGGATGACTATNGNTATAATTATNGGGGATCAANACACTCNAGGCCCTATCAACCAAATTATGACNACTTCTACTCACNTCCGCCCTNTGTATATCAGNCTGNANAAACATATTATGCTAGGTCACATATTTTGTGTATTTNTGATGCCTNNGGAGTNCTACTACGTTCGNCCGCCTTCAGTTTACCAGCCTANANAAACACTTTATNCGGGGCCTATGCCAAATANTTATCAGCGTCATAGTTATGCTCANCCCGTTTNTTATCANCCCGTTTATCCATNATATCNNGCATCTGNGGGGGATGCGTACGTTCCAAGCACCTATTCGCCGTATCCACTTCGTCGNTCGATATCTAACAATCGNCTGATAG]
consensusID : consensus_10655#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 464 fasta sequence
[TATGAAAGTGTATTGCCATTATTGGAAATCGTGTCGGGATCTATCAGACGATTGTTAGATATCGAACGACGAAGTGGATACGGCGAATAGGTGCTTGGAACGTACGCATCCCCAACAGATGCGCGATATGATGGATAAACGGGCTGATAAGAAACGGGCTGAGCATAACTATGACGCTGATAACTATTTGGCATAGGCCCCGGATAAAGTGTTTCTGTAGGCTGGTAAACTGAAGGCGGACGAACGTAGTANGACTCACGAGGCATCAGAAATACACAAAATATGTGACCTAGCATAATATGTTTCTACAGGCTGATATACAGAGGGCGGACGTGAGTANAAGTCGTNATAATTTGGTTGATAGGGCCTTGAGTGTCTTGATCCCCGATAATTATAGCGATAGTCATNCCTAATCCGATCATCCAAAGTTCTAGGATGTAAATAACCTGGAAGTTGTATGACTT]
[+] EMBL BE431319 [TATGAAAGTGTATTGCCATTATTGGAAATCGTGTCGGGATCTATCAGACGATTGTTAGATATCGAACGACGAAGTGGATACGGCGAATAGGTGCTTGGAACGTACGCATCCCCAACAGATGCGCGATATGATGGATAAACGGGCTGATAAGAAACGGGCTGAGCATAACTATGACGCTGATAACTATTTGGCATAGGCCCCGGATAAAGTGTTTCTGTAGGCTGGTAAACTGAAGGCGGACGAACGTAGTANGACTCACGAGGCATCAGAAATACACAAAATATGTGACCTAGCATAATATGTTTCTACAGGCTGATATACAGAGGGCGGACGTGAGTANAAGTCGTNATAATTTGGTTGATAGGGCCTTGAGTGTCTTGATCCCCGATAATTATAGCGATAGTCATNCCTAATCCGATCATCCAAAGTTCTAGGATGTAAATAACCTGGAAGTTGTATGACTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10655#0 ------------------------------------------------------------
consensus_10655#2 ----------------------------GGACAAACTCAACAGCCTTTTGTAATCGGTAT 32
consensus_10655#3 ------------------------------------------------------------
consensus_10655#4 ------------------------------------------------------------
consensus_10655#1 TCTNGCGCTTTGTGGAAAGACATCGTTGGGCAAAATTTTGATACAAACCAATCCAGTCAC 60
consensus_10655#5 ------------------------------------------------------------
consensus_10655#0 ------------------------------------------------------------
consensus_10655#2 ATGTGGAGGTAGTGCAAGCGGTAAAACATCTGTTGCCCGCGTAATTATTGAAAGTCTGGA 92
consensus_10655#3 ------------------------------------------------------------
consensus_10655#4 ------------------------------------------------------------
consensus_10655#1 ATCTGAACCTGAATTACACTACATTCGTTTACCTCTTTTTTTTTTTTTTTTTTTAAAAGA 120
consensus_10655#5 ------------------------------------------------------------
consensus_10655#0 ------------------------------------------------------------
consensus_10655#2 TGTACAGTGGGTCAGTTTATTAAGTTTGGACTCATACTACAAGGTTCTTACTCCAGAGCA 152
consensus_10655#3 ------------------------------------------------------------
consensus_10655#4 ------------------------------------------------------------
consensus_10655#1 TGTCAAAAAATGTATTTAAATATAAAGAAAGTTTAAAATTCTTGCTTACAAGCTCATTTT 180
consensus_10655#5 ------------------------------------------------------------
consensus_10655#0 ------------------------------------------------------------
consensus_10655#2 AAAACTTCAAGCTGTTGCTTGTCATTATAATTTCGATCATCCAAGCGCTTTTGATCTTGA 212
consensus_10655#3 ------------------------------------------------------------
consensus_10655#4 ------------------------------------------------------------
consensus_10655#1 TAATTACACATTATTCAAAAGGTTTACATTTAGAGTATAATCAAAGCATCTCGTGATATT 240
consensus_10655#5 ------------------------------------------------------------
consensus_10655#0 ------------------------------------------------------------
consensus_10655#2 TTTATTAGAAAATCATTTACGTAGGTTACGCGACGGTAAAACAATTGAAGTACCTGAATA 272
consensus_10655#3 ------------------------------------------------------------
consensus_10655#4 ------------------------------------------------------------
consensus_10655#1 CTTCTTAATCAAAACTCAACATGGTTTAAACAGAAACCAGAAGATGGGTGTCCTCTTTAA 300
consensus_10655#5 ------------------------------------------------------------
consensus_10655#0 ------------------------------------------CNAGGCCA-ANAATTTGG 17
consensus_10655#2 TGATTTCAAAACTCATTCTCGTACTTCTAAGACGAATACTGTCTACGGGG-CTAATAT-- 329
consensus_10655#3 --------------------------------------------ACGAGG-ACTATTTCT 15
consensus_10655#4 -------------------------------------CATGTATTCGTGGTACTATTTNT 23
consensus_10655#1 TAATAGTACCCATCGTTCGTATTCCTTGTATGGTAAATCTGAACCCTTGGGTATGTACGC 360
consensus_10655#5 ------------------------------------------------------------
consensus_10655#0 CACGAGGATCGAAGGAATTTTGGTATT-CTATTCACAAGCTGTGGCCAAACTAATGG-AT 75
consensus_10655#2 TATTATCATTGAAGGAATTTTGGTATT-CTATTCACAAGCTGTGGCCAAACTAATGG-AT 387
consensus_10655#3 GACAGGTGCTACAAATGTCATGTCGTC-GGAGAAGTCATACAACTCCAGGTTATTTACAT 74
consensus_10655#4 GACAGGTGCTACAAATGTGATGTCGGC-GNAGAAGTCATACAACTCCAGGTTATTTACAT 82
consensus_10655#1 GGAGAATA-TGAAAGTGTATTGCCATTATTGGAAATCGTGTCGGGATCTATCAGACG-AT 418
consensus_10655#5 ------TA-TGAAAGTGTATTGCCATTATTGGAAATCGTGTCGGGATCTATCAGACG-AT 52
* * ** * **
consensus_10655#0 TTGAAGGTGTTTGTTGATACAGACGCAGATGAACGCTTATCTCGTCGTCTTCG-TCGTGA 134
consensus_10655#2 TTGAAGGTGTTTGTTGATACAGACGCAGATGAACGCTTATCTCGTCGTCTTCG-TCGTGA 446
consensus_10655#3 CCTAGAACTTTGGATGATCGGATTAGGGATGACTATCGCTATAATTATCGGGGATCAAGA 134
consensus_10655#4 NCTACAACTTTGGATGATCGGATTANGGATGACTATNGNTATAATTATNGGGGATCAANA 142
consensus_10655#1 TGTTAGATATCGAACGAC-GAAGTGGATACGG-CGAATAGGTGCTTG-GAACGTACGCAT 475
consensus_10655#5 TGTTAGATATCGAACGAC-GAAGTGGATACGG-CGAATAGGTGCTTG-GAACGTACGCAT 109
* ** * * * * * *
consensus_10655#0 TATTAGTGAACGTGGTAGAGAATTGAATAGCGTACTAGAACAATATATGCGCTTTGTCAA 194
consensus_10655#2 TATTAGTGAACGTGGTAGAGAATTGAATAGCGTACTAGAACAATATATGCGCTTTGTCAA 506
consensus_10655#3 CACTCAAGGCCCTATCAACCAAATTA-TGACGACTTCTACTCACGTCCGCCCTCTGT-AT 192
consensus_10655#4 CACTCNAGGCCCTATCAACCAAATTA-TGACNACTTCTACTCACNTCCGCCCTNTGT-AT 200
consensus_10655#1 CCCCAACAGATGCGCGATATGATGGATAAACGGGCT--GATAAGAAACGGGCTGAGCATA 533
consensus_10655#5 CCCCAACAGATGCGCGATATGATGGATAAACGGGCT--GATAAGAAACGGGCTGAGCATA 167
* * * * * * * ** *
consensus_10655#0 ACCTTCCTATGAACAATTTATTGCTCCAAG-CATGGCTCAAGCAGATATTATTGTTCCAA 253
consensus_10655#2 ACCTTCCTATGAACAATTTATTGCTCCAAG-CATGGCTCAAGCAGATATTATTGTTCCAA 565
consensus_10655#3 ATCAGCCTGTAGA-AACATATTATGCTAGG-------------------------CCTCG 226
consensus_10655#4 ATCAGNCTGNANA-AACATATTATGCTAGGTCACATATTTTGTGTATTTNTGATGCCTNN 259
consensus_10655#1 ACTATGACGCTGATAACTATTTGGCATANGGCCCGGATAAAGTG--TTTCTGTAGGCTGG 591
consensus_10655#5 ACTATGACGCTGATAACTATTTGGCATAGGCCCCGGATAAAGTG--TTTCTGTAGGCTGG 225
* * ** ** * * *
consensus_10655#0 GAGGTGGAAAAAATGTTGTCGCTCTGCAACTTATCGTTCAACACATCAA----------- 302
consensus_10655#2 GAGGTGGAAAAAATGTTGTCGCTCTGCAACTTATCGTTCAACACATCAA----------- 614
consensus_10655#3 TGAGTCCTACTACGTTCGTCCGCCTTCAGTTTACCAGCCTACAGAAACA----------- 275
consensus_10655#4 GGAGTNCTACTACGTTCGNCCGCCTTCAGTTTACCAGCCTANANAAACA----------- 308
consensus_10655#1 TAAACTGAAGGCGGACGAACGTAGTAGGACTCACGAGGC--------------------- 630
consensus_10655#5 TAAACTGAAGGCGGACGAACGTAGTANGACTCACGAGGCATCAGAAATACACAAAATATG 285
* * * * * *
consensus_10655#0 ----T-AAACGTCTAAAACAGTGTGGACTACGAACCAGA---CATAAATTTGCCAAATTC 354
consensus_10655#2 ----T-AAACGTCTAAAACAGTGTGGACTACGAACCAGA---CATAAATTTGCCAAATTC 666
consensus_10655#3 ----C-TTTATCCGGGGCCTATGCCAAATAGTTATCAGCGT-CATAGTTATGCTCAGCCC 329
consensus_10655#4 ----C-TTTATNCGGGGCCTATGCCAAATANTTATCAGCGT-CATAGTTATGCTCANCCC 362
consensus_10655#1 ----CTAGCATAATATGTTTCTACAGGCTGATATACAGAGGGCGGACGTGAGTAGAAGTC 686
consensus_10655#5 TGACCTAGCATAATATGTTTCTACAGGCTGATATACAGAGGGCGGACGTGAGTANAAGTC 345
* * *** * * * * * *
consensus_10655#0 CCATTCATACTTCCTAATGGTGCATTACCAACAGATTCTAACGATGCAACTTGGGAGGAT 414
consensus_10655#2 CCATTCATACTTCCTAATGGTGCATTACCAACAGATTCTAACGATGCAACTTGGGAGGAT 726
consensus_10655#3 GTTTCTTATCAGCCCGTTTATCCATCATATCGCGCATCTGTTGGGGATGCGTACGTTC-C 388
consensus_10655#4 GTTTNTTATCANCCCGTTTATCCATNATATCNNGCATCTGNGGGGGATGCGTACGTTC-C 421
consensus_10655#1 GTCATAATTTGGTTGATAGGGCCGAAATAGAAATATCTTATATCCAATAATCACGATATA 746
consensus_10655#5 GTNATAATTTGGTTGATAGGGCC----TTGAGTGTCTTGATCCCCGATAATTATAGCGAT 401
*
consensus_10655#0 AATAATTCAACTGGTGTAAATAATACAGTAGATGATGTTTTTACAATGAACAACCATCTG 474
consensus_10655#2 A----------------------------------------------------------- 727
consensus_10655#3 AAGCACCTATTCGCCGTATCCACTTCGTCGTTCGATATCTAACAATCGTCTGATAGATCC 448
consensus_10655#4 AAGCACCTATTCGCCGTATCCACTTCGTCGNTCGATATCTAACAATCGNCTGATAG---- 477
consensus_10655#1 TGTTATG----TGATTAAGTT-TTCAAGAATGTGGTTTGCAGTTGAGTTACAATAAAAAG 801
consensus_10655#5 AGTCATNC--CTAATCCGATCATCCAAAGTTCTAGGATGTAAATAACCTGGAAGTTGTAT 459
consensus_10655#0 TACAATAACAAGCAATATACTACTAATGGTACATCTGATAAAGCATGTCTCCCACCTCGA 534
consensus_10655#2 ------------------------------------------------------------
consensus_10655#3 CGACACGATTTCCAATA--ATGGCAATACACTTTCATATTCTCCGCGTACATACCCAAGG 506
consensus_10655#4 ------------------------------------------------------------
consensus_10655#1 GATGAAATTGTTTTATCTCAAACTAAATAAAATGTATAGAGTAAATACAATTAGC---GA 858
consensus_10655#5 GACTT------------------------------------------------------- 464
consensus_10655#0 GTTCATGTATTGCCTTCCACACCTCAAAGACTTGGTCTGCATACATTAATTCGTGATCAA 594
consensus_10655#2 ------------------------------------------------------------
consensus_10655#3 GTTCAGAT---------------------------------------------------- 514
consensus_10655#4 ------------------------------------------------------------
consensus_10655#1 AATCTGAAACTAAATGATTAAAGTGAAAACGTCATCAAACAGCGGCACTGAAAAAACTGT 918
consensus_10655#5 ------------------------------------------------------------
consensus_10655#0 AGCACCGATCAAGATGCATTTGTTTTCTATGCTGAACGTTTGATGCGTCCTTTATGTGAA 654
consensus_10655#2 ------------------------------------------------------------
consensus_10655#3 ------------------------------------------------------------
consensus_10655#4 ------------------------------------------------------------
consensus_10655#1 TGAATGGAAAAAATAAAATATATTTGCCATAAATATTTGTTATTCTGGCCTTCTAAATGG 978
consensus_10655#5 ------------------------------------------------------------
consensus_10655#0 GCTGCAATGAATCTACTTCCTCATATGGATAAGATATCGAGACTCCTCAGGGTATCACTT 714
consensus_10655#2 ------------------------------------------------------------
consensus_10655#3 ------------------------------------------------------------
consensus_10655#4 ------------------------------------------------------------
consensus_10655#1 AAGTTAGGGGAATTCGTGACAATTATTTACAATATTTTGTTATTTTTTCCATTTGAAAAC 1038
consensus_10655#5 ------------------------------------------------------------
consensus_10655#0 ATCGTGGTCGGGAATTAGCTACGGGCANTCAAGTATGTGGTGTATCTATTNTAATAGCAG 774
consensus_10655#2 ------------------------------------------------------------
consensus_10655#3 ------------------------------------------------------------
consensus_10655#4 ------------------------------------------------------------
consensus_10655#1 ATTTAAGCTCGTACCGAAAAAACTTACCTTGAGTGTCTTGATCCCCGATAATTATAGCGA 1098
consensus_10655#5 ------------------------------------------------------------
consensus_10655#0 GTGAAGTACTTGAACGGGCTCTATGCGCTGTGTGTANAGACATTCGTTTGGGCAAAATTN 834
consensus_10655#2 ------------------------------------------------------------
consensus_10655#3 ------------------------------------------------------------
consensus_10655#4 ------------------------------------------------------------
consensus_10655#1 TAGTCATCCCTAATCCGATCATCCAAAGTTCTAGGATGTAAATAACCTGGAGTTGTATGA 1158
consensus_10655#5 ------------------------------------------------------------
consensus_10655#0 TGATACAAACCAATCCAGTCACATCTGAACCTGAATTACACTACATTCGTTTACCTCGAG 894
consensus_10655#2 ------------------------------------------------------------
consensus_10655#3 ------------------------------------------------------------
consensus_10655#4 ------------------------------------------------------------
consensus_10655#1 CTTCTCCGACGACATGACATTTGTAGCACCTGTCAGAAATAGTACCACCTCGTGCCGAAT 1218
consensus_10655#5 ------------------------------------------------------------
consensus_10655#0 ATATTAAGGACTGTTTTGTTATACTCATGGATGCTACTGTGGCTACTGGAGCGGCTGCTA 954
consensus_10655#2 ------------------------------------------------------------
consensus_10655#3 ------------------------------------------------------------
consensus_10655#4 ------------------------------------------------------------
consensus_10655#1 TNTTGGCTCGGAGGG--------------------------------------------- 1233
consensus_10655#5 ------------------------------------------------------------
consensus_10655#0 TAATGGCTATGCGTATATTAGTGGAACATGATGTACCGGAAGATAAAATTATTCTCATCT 1014
consensus_10655#2 ------------------------------------------------------------
consensus_10655#3 ------------------------------------------------------------
consensus_10655#4 ------------------------------------------------------------
consensus_10655#1 ------------------------------------------------------------
consensus_10655#5 ------------------------------------------------------------
consensus_10655#0 CCTTAATAATGGCTAGTCAAGGTGTACATTCTGTTGCTTATACATATCCAAAGGCTCACA 1074
consensus_10655#2 ------------------------------------------------------------
consensus_10655#3 ------------------------------------------------------------
consensus_10655#4 ------------------------------------------------------------
consensus_10655#1 ------------------------------------------------------------
consensus_10655#5 ------------------------------------------------------------
consensus_10655#0 TTGTAACTACTGCTGTAGATTCAGGCTTAAATGATAGTTATCACATTGTTCCAGGTGTTG 1134
consensus_10655#2 ------------------------------------------------------------
consensus_10655#3 ------------------------------------------------------------
consensus_10655#4 ------------------------------------------------------------
consensus_10655#1 ------------------------------------------------------------
consensus_10655#5 ------------------------------------------------------------
consensus_10655#0 GAAATTTCGGTGACCGCTATTTTGGTACTACTTTGGATCTAGAAACAAGATAACGAAATC 1194
consensus_10655#2 ------------------------------------------------------------
consensus_10655#3 ------------------------------------------------------------
consensus_10655#4 ------------------------------------------------------------
consensus_10655#1 ------------------------------------------------------------
consensus_10655#5 ------------------------------------------------------------
consensus_10655#0 TGATTGCTTCTTTTCTTCATAATATTCTGCAACACTTCTGCCAATCTGAGTGAATTACAT 1254
consensus_10655#2 ------------------------------------------------------------
consensus_10655#3 ------------------------------------------------------------
consensus_10655#4 ------------------------------------------------------------
consensus_10655#1 ------------------------------------------------------------
consensus_10655#5 ------------------------------------------------------------
consensus_10655#0 AGTCAGGAGCCTTTTTGATTGGTTTTAGTCTGATTTTTAATTAATTCTTTCCTTTAAAAA 1314
consensus_10655#2 ------------------------------------------------------------
consensus_10655#3 ------------------------------------------------------------
consensus_10655#4 ------------------------------------------------------------
consensus_10655#1 ------------------------------------------------------------
consensus_10655#5 ------------------------------------------------------------
consensus_10655#0 GTTTTTATTTTGTTCTTCTGACAAACATTTTGTGGAAATTTGCTTTCA 1362
consensus_10655#2 ------------------------------------------------
consensus_10655#3 ------------------------------------------------
consensus_10655#4 ------------------------------------------------
consensus_10655#1 ------------------------------------------------
consensus_10655#5 ------------------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||