These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10656#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 761 fasta sequence [TAGCTTCGACGTGACGGCGCGAATCAGCGGGAAATCGTGCTTGTAGAATGGCGAATACGGGGAAAATATCTCTCAAACGGAAGTTTATAAAAGCTGGAGTGTTTAAGGCTGAGTTAGATGAGTTCCTTAAACGTGAATTAGCTGACGATGGTTACAGTGGTTTCCAAGTTCGTGAAAGCCGTAAATACACGGAAGTCATCATATTAGCTACAAAGACCCAGAGCGTTCTTGGTGAGGGTTCACGCCGTATCCGAGAGCTCACCTCGGTCTTGCAAAAACGCTTCGGATTTGCTGACGGTACCTTGGGACTGTTTGCTGAAAAGATGACTTTCCGTGGATTGAGCGCTATCGCGCAAGCA-GAATCACTTAGGTACAAACTGACATATGGGTTGCCTGTACGGAAAGCATGCTATGGTATACTCC-GATTCATCATGGAATCTGGAGCAAGAGGTGCTGAAGTTATCGTTTCTGGTAAAATTAAAGGTCAGAGAGCGAAAGCTATGAAGTTTTGCGATGGACTCATGATTCATTCTGGAGATCCAGTTAACAACTACATTGACAAGGCTGTACGTCATGTTCAACTTCCACAAGGTATAC-TAGGAATCAAAGTCAAAATTATGTTGGATCACGATAGTTCCGGCAAAAAAGGTCCACGGAAACCTTTGCCTGACACCGTCACAATTTTGGCCGCTAAAGAAGAAGTTTTACCAACTGCTCCATATTCTGAAAACAAGATGTAATTAATTTTACAATAAAGCTTG] [+] EMBL CD133043 [TAGCTTCGACGTGACGGCGCGAATCAGCGGGAAATCGTGCTTGTAGAATGGCGAATACGGGGAAAATATCTCTCAAACGGAAGTTTATAAAAGCTGGAGTGTTTAAGGCTGAGTTAGATGAGTTCCTTAAACGTGAATTAGCTGACGATGGTTACAGTGGTTTCCAAGTTCGTGAAAGCCGTAAATACACGGAAGTCATCATATCAGCTACAAAGACCCAGAGCGTTCTTGGTGAGGGTTCACGCCGTATCCGAGAGCTCACCTCGGTCTTGCAAAAACGCTTCGGATTTGCTGACGGTACCTTGGGACTGTTTGCTGAAAAGATGACTTTCCGTGGATTGAGCGCTATCGCGCAAGCA GAATCACTTAGGTACAAACTGACATATGGGTTGCCTGTACGGAAAGCATGCTATGGTATACTCC GATTCATCATGGAATCTGGAGCAAGAGGTGCTGAAGTTATCGTTTCTGGTAAAATTAAAGGTCAGAGAGCGAAAGCTATGAAGTTTTGCGATGGACTCATGATTCATTCTGGAGATCCAGNTAACAACTACATTGANCAGGCTGTACGTCATGTTCAACTTCCAC AGGTATACTTAGGAAag ] [-] EMBL CD162620 [ AGCTTCGACGTGACGGCGCGAATCAGCGGGAAATCGTGCTTGTAGAATGGCGAATACGGGGAAAATATCTCTCAAACGGAAGTTTATAAAAGCTGGAGTGTTTAAGGCTGAGTTAGATGAGTTCCTTAAACGTGAATTAGCTGACGATGGTTACAGTGGTTTCCAAGTTCGTGAAAGCCGTAAATACACGGAAGTCATCATATTAGCTACAAAGACCCAGAGCGTTCTTGGTGAGGGTTCACGCCGTATCCGAGAGCTCACCTCGGTCTTGCAAAAACGCTTCGGATTTGCTGACGGTACCTTGGGACTGTTTGCTGAAAAGATGACTTTCCGTGGATTGAGCGCTATCGCGCAAGCA GAATCACTTAGG ] [+] EMBL CD189726 [ TTCGACGTGACGGCGCGAATCAGCGGGAAATCGTGCTTGTAGAATGGCGAATACGGGGAAAATATCTCTCAAACGGAAGTTTATAAAAGCTGGAGTGTTTAAGGCTGAGTTAGATGAGTTCCTTAAACGTGAATTAGCTGACGATGGTTACAGTGGTTTCCAAGTTCGTGAAAGCCGTAAATACACGGAAGTCATCATATTAGCTACAAAGACCCAGAGCGTTCTTGGTGAGGGTTCACGCCGTATCCGAGAGCTCACCTCGGTCTTGCAAAAACGCTTCGGATTTGCTGACGGTACCTTGGGACTGTTTGCTGAAAAGATGACTTTCCGTGGATTGAGCGCTATCGCGCAAGCA GAATCACTTAGGTACAAACTGACATATGGGTTGCCTGTACGGAAAGCATGCTATGGTATACTCC GATTCATCATGGAATCTGGAGCAAGAGGTGCTGAAGTTATCGTTTCTGGTAAAATTAAAGGTCAGAGAGCGAAAGCTATGAAGTTTTGCGATGGACTCATGATTCATTCTGGAGATCCAGTTAACAACTACATTGANCAGGCTGTACGTCATGTTCAACTTCC ] [+] EMBL CD155311 [ ACGTGACGGCGCGAATCAGCGGGAAATCGTGCTTGTAGAATGGCGAATACGGGGAAAATATCTCTCAAACGGAAGTTTATAAAAGCTGGAGTGTTTAAGGCTGAGTTAGATGAGTTCCTTAAACGTGAATTAGCTGACGATGGTTACAGTGGTTTCCAAGTTCGTGAAAGCCGTAAATACACGGAAGTCATCATATTAGCTACAAAGACCCAGAGCGTTCTTGGTGAGGGTTCACGCCGTATCCGAGAGCTCACCTCGGTCTTGCAAAAACGCTTCGGATTTGCTGACGGTACCTTGGGACTGTTTGCTGAAAAGATGACTTTCCGTGGATTGAGCGCTATCGCGCAAGCA GAATCACTTAGGTACAAACTGACATATGGGTTGCCTGTACGGAAAGCATGCTATGGTATACTCC GATTCATCATGGAATCTGGAGCAAGAGGTGCTGAAGTTATCGTTTCTGGTAAAATTAAAGGTCAGAGAG ] [+] EMBL AI976209 [ GAATCAGCGGGAAATCGTGCTTGTAGAATGGCGAATACGGGGAAAATATCTCTCAAACGGAAGTTTATAAAAGCTGGAGTGTTTAAGGCTGAGTTAGATGAGTTCCTTAAACGTGAATTAGCTGACGATGGTTACAGTGGTTTCCAAGTTCGTGAAAGCCGTAAATACACGGAAGTCATCATATTAGCTACAAAGACCCAGAGCGTTCTTGGTGAGGGTTCACGCCGTATCCGAGAGCTCACCTCGGTCTTGCAAAAACGCTTCGGATTTGCTGACGGTACCTTGGGACTGTTTGCTGAAAAGATGACTTTCCGTGGATTGAGCGCTATCGCGCAAGCA GAATCACTTAGGTACAAACTGACATATGGGTTGCCTGTACGGAAAGCATGCTATGGTATACTCC GATTCATCATGGAATCTGGAGCAAGAGGTGCTGAAGTTATCGTTTCTGGTAAAATTAAAGGTCAGAGAGCGAAAGCTATGAAGTTTTGCGATGGACTCATGATTCATTCTGGAGATCCAGTTAACAACTACATTGACAAGGCTGTACGTCATGTTCAACTTCCACAAGGTATAC TAGGAATCAAAGTCAAAATTATGTTGGATCACGATAGTTCCGGCAAAAAAGGTCCACGGAAACCTTTGCCTGAC ] [+] EMBL SMAA18471 [ GCGGGAAATCGTGCTTGTAGAATGGCGAATACGGGGAAAATATCTCTCAAACGGAAGTTTATAAAAGCTGGAGTGTTTAAGGCTGAGTTAGATGAGTTCCTTAAACGTGAATTAGCTGACGATGGTTACAGTGGTTTCCAAGTTCGTGAAAGCCGTAAATACACGGAAGTCATCATATTAGCTACAAAGACCCAGAGCGTTCTTGGTGAGGGTTCACGCCGTATCCGAGAGCTCACCTCGGTCTTGC AAAACGCTTCGGATTTGCTGACGGTACCTTGGGACTGTTTGCTGAAAAGATGACTTTCCGTGGATTGAGCGCTATCGCGCAAGCAGGAATCACTTAGGTACAAACTGACATATGGGTTGCCTGTACGGAAAGCATGCTATGGTATACTCCGGATTCATCATGGAATCTGGAGCAAGAGGTGCTGAAGTTATCGTTTCTGGTAAAATTAAAGGTCAGAGAGCGAAACCTATGAAGTTTTGCGATGGACTCATGA ] [+] EMBL BG931640 [ tTCGTGCTTGTAGAATGGCGAATACGGGGAAAATATCTCTCAAACGGAAGTTTATAAAAGCTGGAGTGTTTAAGGCTGAGTTAGATGAGTTCCTTAAACGTGAATTAGCTGACGATGGTTACAGTGGTTTCCAAGTTCGTGAAAGCCGTAAATACACGGAAGTCATCATATTAGCTACAAAGACCCAGAGCGTTCTTGGTGAGGGTTCACGCCGTATCCGAGAGCTCACCTCGGTCTTGCAAAAACGCTTCGGATTTGCTGACGGTACCTTGGGACTGTTTGCTGAANAGATGACTTTCCGTGGATTGAGCGCTATCGCGCAAGCA GAATCACTTAGGTACAAACTGACATATGGGTTGCCTGTACGGAAAGCA ] [+] EMBL CD155305 [ GGGAAAATATCTCTCAAACGGAAGTTTATAAAAGCTGGAGTGTTTAAGGCTGAGTTAGATGAGTTCCTTAAACGTGAATTAGCTGACGATGGTTACAGTGGTTCCCAAGTTCGTGAAAGCCGTAAATACACGGAAGTCATCATATTAGCTACAAAGACCCAGAGCGTTCTTGGTGAGGGTTCACGCCGTATCCGAGAGCTCACCTCGGTCTTGCAAAAACGCTTCGGATTTGCTGACGGTACCTTGGGACTGTTTGCTGAAAAGATGACTTTCCGTGGATTGAGCGCTATCGCGCAAGCA GAATCACTTAGGTACAAACTGACATATGGGTTGCCTGTACGGAAAGCATGCTATGGTATACTCC GATTCATCATGGAATCTGGAGCAAGAGGTGCTGAAGTTATCGTTTCTGGTAAAATTAAAGGTCAGAGAGCGAAAGCTATGAAGTTTTGAGATGGACTCATGATTCATTCTGGAGATCCAGTTAACAACTACAT ] [+] EMBL CD065593 [ cACGGAACTTTATAAAAGCTGGAGTG TTAAG TGAGTTAGATGAGTTCCTTAAACGTGAATTAGCTGACGATGGTTACAGTGGTTTCCAAGTTCGTGAAAGCCGTAAATACACGGAAGTCATCATATTAGCTACAAAGACCCAGAGCGTTCTTGGTGAGGGTTCACGCCGTATCCGAGAGCTCACCTCGGTCTTGCAAAAACGCTTCGGATTTGCTGACGGTACCTTGGGACTGTTTGCTGAAAAGATGACTTTCCGTGGATTGAGCGCTATCGCGCAAGCA GAATCACTTAGGTACAAACTGACATATGGGTTGCCTGTACGGAAAGCATGCTATGGTATACTCC GATTCATCATGGAATCTGGAGCAAGA ] [-] EMBL CD186250 [ GCTGAGTTAGATGAGTTCCTTAAACGTGAATTAGCTGACGATGGTTACAGTGGTTTCCAAGTTCGTGAAAGCCGTAAATACACGGAAGTCATCATATCAGCTACAAAGACCCAGAGCGTTCTTGGTGAGGGTTCACGCCGTATCCGAGAGCTCACCTCGGTCTTGCAAAAACGCTTCGGATTTGCTGACGGTACCTTGGGACTGTTTGCTGAAAAGATGACTTTCCGTGGATTGAGCGCTATCGCGCAAGCA GAATCACTTAGGTACAAACTGACATATGGGTTGCCTGTACGGAAAGCATGCTATGGTATACTCC GATTCATCATGGAATCTGGAGCAAGAGGTGCTGAAGTTATCGTTTCTGGTAAAATTAAAGGTCAGAGAGCGAAAGCTATGAAGTTTTGCGATGGACTCATGATTCATTCTGGAGATCCAGTTAACAACTACATTGACAAGGCTGTACGTCAT ] [+] EMBL AW017058 [ TAGATGAGTTCCTTAAACGTGAATTAGCTGACGATGGTTACAGTGGTTTCCAAGTTCGTGAAAGCCGTAAATACACGGAAGTCATCATATTAGCTACAAAGACCCAGAGCGTTCTTGGTGAGGGTTCACGCCGTATCCGAGAGCTCACCTCGGTCTTGCAAAAACGCTTCGGATTTGCTGACGGTACCTTGGGACTGTTTGCTGAAAAGATGACTTTCCGTGGATTGAGCGCTATCGCGCAAGCA GAATCACTTAGGTACAAACTGACATATGGGTTGCCTGTACGGAAAGCATGCTATGGTATACTCC GATTCATCATGGAATCTGGAGCAAGAGGTGCTGAAGTTATCGTTTCTGGTAAAATTAAAGGTCAGAGAGCGAAAGCTATGAAGTTTTGCGATGGACTCATGATTCATTCTGGAGATCCAGTTAACAACTACATTGACAAGGCTGTACGTCATGTTCAACTTCCACAAGGTATAC TAGGAATCAAAGTCAAAATTATGTTGGATCACGATAGTTCCGGCAAAAAAGGTCCACGGAAACCTTTGCCTGACACCGTCAC ] [-] EMBL CD135984 [ CTGTTTGCTGAAAAGATGACTTTCCGTGGATTGAGCGCTATCGCGCAAGCA GAATCACTCAGGTACAAACTGACATATGGGTTGCCTGTACGGAAAGCATGCTATGGTATACTCC GATTCATCATGGAATCTGGAGCAAGAGGTGCTGAAGTTATCGTTTCTGGTAAAATTAAAGGTCAGAGAGCGAAAGCTATGAAGTTTTGCGATGGACTCATGATTCATTCTGGAGATCCAGTTAACAACTACATTGACAAGGCTGTACGTCATGTTCAACTTCCACAAGGTATAC TAGGAATCAAAGTCAAAATTATGTTGGATCACGATAGTTCCGGCAAAAAAGGTCCACGGAAACCTTTGCCTGACACCGTCACAATTTTGGCCGCTAAAGAAGAAGTTTTACCAACTGCTCCATATTCTGAAAACAAGATGTAATTAATTTTACAAT ] [-] EMBL CD135970 [ TCGCGCAAGCA GAATCACTGAGGTACAAACTGACATATGGGTTGCCTGTACGGAAAGCATGCTATGGTATACTCC GATTCATCATGGAATCTGGAGCAAGAGGTGCTGAAGTTATCGTTTCTGGTAAAATTAAAGGTCAGAGAGCGAAAGCTATGAAGTTTTGCGATGGACTCATGATTCATCCTGGAGATCCAGTTAACAACTACATTGACAAGGCTGTACGTCATGTTCAACTTCCACAAGGTATAC TAGGAATCAAAGTCAAAATTATGTTGGATCACGATAGTTCCGGCAAAAAAGGTCCACGGAAACCTTTGCCTGACACCGTCACAATTTTGGCCGCTAAAGAAGAAGTTTTACCAACTGCTCCATATTCTGAAAACAAGATGTAATTAATTTTACAAT ] [-] EMBL CD135935 [ ATGCTATGGTATACTCC GATTCATCATGGAATCTGGAGCAAGAGGTGCTGTAGTTATCGTTTCTGGTAAAATTAAAGGTCAGAGAGCGAAAGCTATGAAGTTTTGCGATGGACTCATGATTCATTCTGGAGATCCAGTTAACAACTACATTGACAAGGCTGTACGTCATGTTCAACTTCCACAAGGTATAC TAGGAATCAAAGTCAAAATTATGTTGGATCACGATAGTTCCGGCAAAAAAGGTCCACGGAAACCTTTGCCTGACACCGTCACAATTTTGGCCGCTAAAGAAGAAGTTTTACCAACTGCTCCATATTCTGAAAACAAGATGTAATTAATTTTACAAT ] [+] EMBL CD135993 [ ATCTGGAGCAAGAGGTGCTGAAGTTATCGTTTCTGGTAAAATTAAAGGTCAGAGAGCGAAAGCTATGAAGTTTTGCGATGGACTCATGATTCATTCTGGAGATCCAGTTAACAACTACATTGACAAGGCTGTACGTCATGTTCAACTTCCACAAGGTATAC TAGGAATCAAAGTCAAAATTATGTTGGATCACGATAGTTCCGGCAAAAAAGGTCCACGGAAGCCTTTGCCTGACACCGTCACAATTTTGGCCGCTAAAGAAGAAGTTTTACCAACTGCTCCGTATTCTGAAAACAAGATGTAATTAATTTTACAA ] [-] EMBL CD131356 [ TTCATTCTGGAGATCCAGTTAACAACTACATTGACAAGGCTGTACGTCATGTTCAACTTCCACAAGGTATAC TAGGAATCAAAGTCAAAATTATGTTGGATCACGATAGTTCCGGCAAAAAAGGTCCACGGAAACCTTTGCCTGACACCGTCACAATTTTGGCCGCTAAAGAAGAAGTTTTACCAACTGCTCCATATTCTGAAAACAAGATGTAATTAATTTTACAATAAAGC ] [-] EMBL CD135932 [ GTACGTCATGTTCAACTTCCACAAGGTATAC TAGGAATCAAAGTCAAAATTATGTTGGATCACGATAGTTCCGGCAAAAAAGGTCCACGGAAACCTTTGCCTGACACCGTCACAATTTTGGCCGCTAAAGAAGAAGTTTTACCAACTGCTCCATATTCTGAAAACAAGATGTAATTAATTTTACAAT ] [+] EMBL SM644 [ nAAAAAAGGTCCACGGAANCCTTTGGCTGACANCGTCACATTTTTGNTCGCTAAAGAAGANGTTTTACCAACTGCTCCATATTCTGAAAACAAGATGTAATTAATTTTACAATAAAGCTTG] consensusID : consensus_10656#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 106 fasta sequence [ATTGATANGGNTGTACGTCATGTTCAACTTCCACAAGGTATACTAGGAATCAANGTCAAAATTATGTNGGNTCACGATAGTTCCGGCAAAAAGGTCCACGGNANCC] [+] EMBL SM419 [ATTGATANGGNTGTACGTCATGTTCAACTTCCACAAGGTATACTAGGAATCAANGTCAAAATTATGTNGGNTCACGATAGTTCCGGCAAAAAGGTCCACGGNANCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10656#0 TAGCTTCGACGTGACGGCGCGAATCAGCGGGAAATCGTGCTTGTAGAATGGCGAATACGG 60 consensus_10656#1 ------------------------------------------------------------ consensus_10656#0 GGAAAATATCTCTCAAACGGAAGTTTATAAAAGCTGGAGTGTTTAAGGCTGAGTTAGATG 120 consensus_10656#1 ------------------------------------------------------------ consensus_10656#0 AGTTCCTTAAACGTGAATTAGCTGACGATGGTTACAGTGGTTTCCAAGTTCGTGAAAGCC 180 consensus_10656#1 ------------------------------------------------------------ consensus_10656#0 GTAAATACACGGAAGTCATCATATTAGCTACAAAGACCCAGAGCGTTCTTGGTGAGGGTT 240 consensus_10656#1 ------------------------------------------------------------ consensus_10656#0 CACGCCGTATCCGAGAGCTCACCTCGGTCTTGCAAAAACGCTTCGGATTTGCTGACGGTA 300 consensus_10656#1 ------------------------------------------------------------ consensus_10656#0 CCTTGGGACTGTTTGCTGAAAAGATGACTTTCCGTGGATTGAGCGCTATCGCGCAAGCAG 360 consensus_10656#1 ------------------------------------------------------------ consensus_10656#0 AATCACTTAGGTACAAACTGACATATGGGTTGCCTGTACGGAAAGCATGCTATGGTATAC 420 consensus_10656#1 ------------------------------------------------------------ consensus_10656#0 TCCGATTCATCATGGAATCTGGAGCAAGAGGTGCTGAAGTTATCGTTTCTGGTAAAATTA 480 consensus_10656#1 ------------------------------------------------------------ consensus_10656#0 AAGGTCAGAGAGCGAAAGCTATGAAGTTTTGCGATGGACTCATGATTCATTCTGGAGATC 540 consensus_10656#1 ------------------------------------------------------------ consensus_10656#0 CAGTTAACAACTACATTGACAAGGCTGTACGTCATGTTCAACTTCCACAAGGTATACTAG 600 consensus_10656#1 --------------ATTGATANGGNTGTACGTCATGTTCAACTTCCACAAGGTATACTAG 46 ***** * ** *********************************** consensus_10656#0 GAATCAAAGTCAAAATTATGTTGGATCACGATAGTTCCGGCAAAAAAGGTCCACGGAAAC 660 consensus_10656#1 GAATCAANGTCAAAATTATGTNGGNTCACGATAGTTCCGGCAAAAA-GGTCCACGGNANC 105 ******* ************* ** ********************* ********* * * consensus_10656#0 CTTTGCCTGACACCGTCACAATTTTGGCCGCTAAAGAAGAAGTTTTACCAACTGCTCCAT 720 consensus_10656#1 C----------------------------------------------------------- 106 * consensus_10656#0 ATTCTGAAAACAAGATGTAATTAATTTTACAATAAAGCTTG 761 consensus_10656#1 ----------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||