cluster # 10678

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Schistosoma mansoni
cluster # 10678 cluster # 10678 Sequences # 20 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10678#0 length = 1407 sequences # 18

consensus_10678#1 length = 527 sequences # 1
consensus_10678#2 length = 385 sequences # 1

consensusID : consensus_10678#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 18
consensus length = 1407
fasta sequence

                              [AGAATCAGTAACATTATCCATTACTTTGTGACCTAATTACGTAACTTAAGAGGAGTGTTATGTCTTCTGATGTTATTCTAAATTATTACGAGTCCCTTCTGCACAGAGATGACCTAGATACTTTGAAGGAGGGTTGCTTCGTCAATGACAACATAATCACATTCCAGCTTGAGTATCTGCGCCATACAAAATTAAGTCACTCGTCAAATATTCTTCTTATGGATCCAGCAGCATCTCAACTTTTAAAACTGATGGATGAGGAATCAATTAGATTGGTGCTGGATCCTTTAGAATTCAAGTCAAAGGATTGGATATTTTTAGTGATCAATGATTCTGCTTCACGAGTTTCATCTGGTGGATGTCATTGGTCACTGCTGGTTTATTCACCACATCTTATGCACAGTTTTTACCTGGACTCCTTAAACTCTAGTCCTAATTTTTCAGAGGCAATCACTTTGTGTAACAAGTTATGCACCTATTTAGGTATTTCTTTTGTAGACATAAAGCTACCTAATGTCCTAAAGCAAAATAACGGATATGATTGTGGAATATTTTGCATGGTATTCATAGAAATAATATGTGATATGATATTGAAGGGTGATACGTCCTGGCAGATGAGTCTGTCCACTGACATGGTTTCCCA-TCAAGTGATGCACAAAAGGAAATCGTTGCTAGAGTGTATCTATGGCTTATCCACAGCAAATGCGTAGGCTTTTCGTCAAGGTTTCTAGAAGAATCGTGACCCAGCAAACATAAGCAGACCTGAGTTCTGTTTGGCGTTTTCCATTTACAGACTCTTCATGTGTTAAATTTTATCCTAATATACACTGTAAAAAAATATTTCTTCTGTTCACAAGTTGTAGCCAACTATGCGTTTGTCTGGTTGGGGTCATTACGCAGACGGAGATTAGGGTGTATTTAGACTTCCTTTTTGTATGAACTGTCTTTATTCTACATCTCTGGTGGGTCAATTAGTCCCTTTAGGTTTTGCAGATGC-TTTCAAGGTGAAATAGTAAGTTGATTTTTCCCTAAGATCCTCACATGTCCACACTTGTATAATAAAATACCTTGATAACAGTATTCATCACTTGCTTCATCCATGGTCTTGGCCTATATTGACCTAGATATTCTATAGTAAGCTCTGTCACCACTTTCTTTGATGTCTTTTGTTATCCATGACAATCAGATTAACACAATCAGCCCCAAACAATATTAGGGGAACAAATAAGTAAGTTCCTGTTCTAGTTACTGAAACTCAGAAATATATAAATCTAGGCTCATGAGAACTATGTAATTCTCCCATAAATCCGGGGCATCTCGAATTGTATATACCAGACTTTGAAATAATTTTTTATGTTGCAGGGATTTTCAGCAAACAACAAATCAAGAGAACTAACTTTTGTTTTA]

[+] EMBL CD081414             [AGAATCAGTAACATTATCCATTACTTTGTGACCTAATTACGTAACTTAAGAGGAGTGTTATGTCTTCTGATGTTATTCTAAATTATTACGAGTCCCTTCTGCACAGAGATGACCTAGATACTTTGAAGGAGGGTTGCTTCGTCAATGACAACATAATCACATTCCAGCTTGAGTATCTGCGCCATACAAAATTAAGTCACTCGTCAAATATTCTTCTTATGGATCCAGCAGCATCTCAACTTTTAAAACTGATGGATGAGGAATCAATTAGATTGGTGCTGGATCCTTTAGAATTCAAGTCAAAGGATTGGATATTTTTAGTGATCAATGATTCTGCTTCACGAGTTTCATCTGGTGGATGTCATTGGTCACTGCTGGTTTATTCACCACATCTTATGCACAGTTTTTACCTGGACTCCTTAAACTCTAGTCCTAATTTTTCAGAGGCAATCACTTTGTGTAACAAGTTATGCACCTATTTAGGTATTTCTTTTGTAGACATAAAGCTACCTAATGTCCTAAAGCAAAATAACGGATATGATTGTGGAATATTTTGCATGGTATTCATAGAAATAATATGTGATATGATATTGAAGGGTGATACGTCCTGGCAGATGAGTCTGTCCACTGACATGGTTTCCCANTC AGTGATGCACANAAGGAAATCGTTGCTAGAGTGTATCTATGGCTTATCCACAGCAAATGCGTAGGCTTTTCGTC AGGTTTCTAGAAG ATCGTGA CCAGC AACAT AGCAGA CTGAGTTCTGTT  GCGNTTT CATTTAC GACTCTT ATGTG TAAA TTTATCCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD084109             [                                               AAGAGGAGTGTTATGTCTTCTGATGTTATTCTAAATTATTACGAGTCCCTTCTGCACAGAGATGACCTAGATACTTTGAAGGAGGGTTGCTTCGTCAATGACAACATAATCACATTCCAGCTTGAGTATCTGCGCCATACAAAATTAAGTCACTCGTCAAATATTCTTCTTATGGATCCAGCAGCATCTCAACTTTTAAAACTGATGGATGAGGAATCAATTAGATTGGTGCTGGATCCTTTAGAATTCAAGTCAAAGGATTGGATATTTTTAGTGATCAATGATTCTGCTTCACGAGTTTCATCTGGTGGATGTCATTGGTCACTGCTGGTTTATTCACCACATCTTATGCACAGTTTTTACCTGGACTCCTTAAACTCTAGTCCTAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CD074819             [                                                                                                                                                                                                 AAGTCACTCGTCAAATA TCTTCTTATGGATCCAGCAGCATCTCAACTTTTAAAACTGATGGATGAGGAATCAATTAGATTGGTGCTGGATCCTTTAGAATTCAAGTCAAAGGATTGGATATTTTTAGTGATCAATGATTCTGCTTCACGAGTTTCATCTGGTGGATGTCATTGGTCACTGCTGGTTTATTCACCACATCTTATGCACAGTTTTTACCTGGACTCCTTAAACTCTAGTCCTAATTTTTCAGAGGCAATCACTTTGTGTAACAAGTTATGCACCTATTTAGGTATTTCTTTTGTAGACATAAAGCTACCTAATGTCCTAAAGCAAAATAACGGATATGATTGTGGAATATTTTGCATGGTATTCATAGAAATAATATGTGATATGATATTGAAGGGTGATACGTCCTGGCAGATGAGTCTGTCCACTGACATGGTTTCCCA TCAAGTGATGCACAAAAGGAAATCGTTGCTAGAGTGTATCTATGGCTTATCCACAGCAAATGCGTAGGCTTTTCGTCAAGGTTTTTAGAAGAATCGTGACCCAGCAAACATAAGCAGACCTGAGTTCTGTTTGGCGTTTTCCATTTACAGACTCTTCATGTGTTAAATTTTATCCTAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD075243             [                                                                                                                                                                                                                                                                                                                                                               CTGGTGGATGTCATTGGTCACTGCTGGTTTATTCACCACATCTTATGCACAGTTTTTACCTGGACTCCTTAAACTCTAGTCCTAATTTTTCAGAGGCAATCACTTTGTGTAACAAGTTATGCACCTATTTAGGTATTTCTTTTGTAGACATAAAGCTACCTAATGTCCTAAAGCAAAATAACGGATATGATTGTGGAATATTTTGCATGGTATTCATAGAAATAATATGTGATATGATATTGAAGGGTGATACGTCCTGGCAGATGAGTCTGTCCACTGACATGGTTTCCCA TCAAGTGATGCACAAAAGGAAATCGTTGCTAGAGTGTATCTATGGCTTATCCACAGCAAATGCGTAGGCTTTTCGTCAAGGTTTCTAGAAGAATCGTGACCCAGCAAACATAAGCAGACCTGAGTTCTGTTTGGCGTTTTCCATTTACAGACTCTTCATGTGTTAAATTTTATCCTAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL BG930693             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TGTGTCACAAGTTAGGCCCCTATTTAGGTATTTCTTTTGTAGACATAAAGCTCCCTAATGTCATAAAGCAAAATCACGGATATGATTGTGGAATATTTTGCATGGTATTCATAGAAATAATATGTGATATGATATTGAAGGGTGATACGTCCTGGCAGATGAGTCTGTCCACTGACATGGTTTCCCA TCAAGTGATGCACAAAAGGAAATCGTTGCTAGAGTGTATCTATGGCTTATCCACAGCAAATGCGTAGGCTTTTCGTCAAGGTTTCTAGAAGAATCGTGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD194435             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TTCGTCAAGGTTTCTAGAAGAATCGTGACCCAGCAAACATAAGCAGACCTGAGTTCTGTTTGGCGTTTTCCATTTACAGACTCTTCATGTGTTAAATTTTATCCTAATATACACTGTAAAAAAATATTTCTTCTGTTCACAAGTTGTAGCCAACTATGCGTTTGTCTGGTTGGGGTCATTACGCAGACGGAGATTAGGGTGTATTTAGACTTCCTTTTTGTATGAACTGTCTTTATTCTACATCTCTGGTGGGTCAATTAGTCCCTTTAGGTTTTGCAGATGC TTTCAAGGTGAAATAGTAAGTTGATTTTTCCCTAAGATCCTCAC                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD194465             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TTCGTCAAGGTTTCTAGAAGAATCGTGACCCAGCAAACATAAGCAGACCTGAGTTCTGTTTGGCGTTTTCCATTTACAGACTCTTCATGTGTTAAATTTTATCCTAATATACACTGT AAAAAATATTTCTTCTGTTCACAAGTTATAGCCAACTATGCGTTTGTCTGGTTGGGGTCATTACGCAGACGGAGATTAGGGTGTATTTAGACTTCCTTTTTGTATGAGCTGTCTTTATTCTACATCTCTGGTGGGTCAATTAGTCCCTTTAGGTTTTGCAGATGC TTTCAAGGTGAAATAGTAAGTTGATTTTTCCCTAAGATCCT                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD164527             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    acacGAGACTAGGGTGTATTTAGACTTCCTTTTTGTATGAACTGTCTTTATTCTACACCTCTGGTGGGTCAATTAGTCCCTTTAGGTTTTGCAGATGCTTTTCAAGGTGAAATAGTAAGTCGATTTTTCCCTAAGATCCTCACATGTCCACACTTGTATAATAAAATACCTTGGTAACAGTATTCATCACTTGCTTCATCCATGGTCTTGGCCTATATTGACCTAGATATTCTATAGTAAGCTCTGTCACCACTTTCTTTGATGTCTTTTGTTATCCATGACAATCAGATTAACACAATCAGCCCCAAACAATATTAGGGGAACAAATAAGTAAGTTCCTGTTCTAGTTACTGAAATTCAGAAATATATAAATCTAGGCTCATGAGAACTATGTAATTCTCCCATAAATCCGGGGCATCTCGAATTGTATATACCAGACTTTGAAATAATTNTTTATGTTGCAGGGATTTTCAGCAAACAACAAATCAAGAGAACTAACTTTTGTTTTA]
[+] EMBL CD164610             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    acacGAGACTAGGGTGTACTTAGACTTCCTTTTTGTATGAACTGTCTTTATTCTACATCTCTGGTGGGTCAATTAGTCCCTTTAGGTTTTGCAGATGC TTTCAAGGTGAAATAGTAAGTTGATTTTTCCCTAAGATCCTCACATGTCCACACTTGTATAATAAAATACCTTGATAACAGTATTCATCACTTGCTTCATCCATGGTCTTGGCCTATATTGACCTAGATATTCTATAGTAAGCTCTGTCACCACTTTCTTTGATGTCTTTTGTTATCCATGACAATCAGATTAACACAATCAGCCCCAAACAATATTAGGGGAACAAATAAGTAAGTTCCTGTTCTAGTTACTGAAACTCAGAAATATATAAATCTAGGCTCATGAGAACTATGTAATTCTCCCATAAATCCGGGGCATCTCGAATTGTATATACCAGACTTTGAAATAATTTTTTATGTTGCAGGGATTTTCAGCAAACAACAAATCAAGAGAACTAACTTTTGTTTTA]
[+] EMBL CD164563             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GTGTATTTAGACTTCCTTTTTGGATGAACTGTCTTTATTCTACATCTCTGGTGGGTCAATTAGTCCCTTTAGGTTTTGCAGATGC TTTCAAGGTGAAATAGTAAGTTGATTTTTCCCTAAGATCCTCACATGTCCACACTTGTTTAATAAAATACCTTGATAACAGTATTCATCACTTGCTTCATCCATGGTCTTGGCCTATTTTGACCTAAATA                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD164576             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GTATTTAGACTTCCTTTTTGTATGAACTGTCTTTATTCTACATCTCTGGTGGGTCAATTAGTCCCTTTAGGTTTTGCAGATGC TTTCAAGGTGAAATAGTAAGTTGATTTTTCCCTAAGATCCTCACATGTCCACACTTGTATAATAAAATACCTTGATAACAGTATTCATCACTTGCTTCATCCATGGTCTTGGCCTATATTGACCTAGATATTCTATAGTAAGCTCTGTCACCACTTTCTTTGATGTCTTTTGTTATCCATGACAATCAGATTAACACAATCAGCCCCAAACAATATTAGGGGAACAAATAAGTAAGTTCCTGTTCTAGTTACTGAAACTCAGAGATATATAATTCTAGGCTCATGAGAACTATGTAATTCTCCCATAAATCCGGGGCATCTCGAATTGTATATACCAGACTTTGAAATAATTTTTTATGTTGCAGGGATTTTCAGCAAACAACAAATCAAGAGAACTAACTGTTGTTTTA]
[+] EMBL CD164571             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TTTAGACTTCCTTTTTGTATGAACTGTCTTTATTCTACATCTCTGGTGGGTCAATTAGTCCCTTTAGGTTTTGCAGATGC TTTCAAGGTGAAATAGTAAGTTGATTTTTCCCTAAGATCCTCACATGTCCACACTTGTATAATAAAATACCTTGATAACAGTATTCATCACTTGCTTCATCCATGGTCTTGGCCTATATTGACCTACATATTCTATAGTAAGCTCTGTCACCACTTTCTTTGATGTCTTTTGTTATCCATGACAATCAGATTAACACAATCAGCCCCAAACAATATTAGGGGAACAAATAAGTAAGTTCCTGTTCTAGTTACTGAAACTCAGAAATATATAAATCTAGGCTCATGAGAACTATGTAATTCTCCCATAAATCCGGGGCATCTCGAATTGTATATACCAGACTTTGAAATAATTTTTTATGTTGCAGGGATTTTCAGCAAACAACAAATCAAGAGAACTAACTTTTGTTTTA]
[+] EMBL CD164585             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TTTAGACTTCCTTTTTGTGTGAACTGTCTTTATTCTACATCTCTGGTGGGTCAATTAGTCCCTTTAGGTTTTGCAGATGC TTTCAAGGTGAAATAGTAAGTTGATTTTTCCCTAAGATCCTCACATGTCCACACTTGTATAATAAAATACCTTGATAACAGTATTCATCACTTGCTTCATCCATGGTCTTGGCCTATATTGACCTAGATATTCTATAGTAAGCTCTGTCACCACTTTCTTTGATGTCTTTTGTTATCCATGACAATCAGATTAACACAATCAGCCCCAAACAATATTAGGGGAACAAATAAGTAA                                                                                                                                                                               ]
[+] EMBL CD164584             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TTTAGACTTCCTTTTTGTGTGAACTGTCTTTATTCTACATCTCTGGTGGGTCAATTAGTCCCTTTAGGTTTTGCAGATGC TTTCAAGGTGAAATAGTAAGTTGATTTTTCCCTAAGATCCTCACATGTCCACACTTGTATAATAAAATACCTTGATAACAGTATTCATCACTTGCTTCATCCATGGTCTTGGCCTATATTGACCTAGATATTCTATAGTAAGCTCTGTCACCACTTTCTTTGATGTCTTTTGTTATCCATGACAATCAGATTAACACAATCAGCCCCAAACAATATTAGGGGAACAAA                                                                                                                                                                                      ]
[+] EMBL CD164588             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TTTAGACTTCCTTTTTGTATGAACTGTCTTTATTCTACATCTCTGGTGGGTCAATTAGTCCCTTTAGGTTTTGCAGATGC TTTCAAGGTGAAATAGTAAGTTGATTTTTCCCTAACATCCTCACATGTCCACACTTGTATAATAAAATACCTTGATAACAGTATTCATCACTTGCTTCATCCATGGTCTTGGCCTATATTGACCTAGATATTCTATAGTAAGCTCTGTCACCACTTTCTTTGATGTCTTTTGTTATCCATGACAATCAGATTAACACAATCAGCCCCAAACAATATTAGGGGAACAAATAAGTAAGTTCCTGTTCTAGTTACTGAAACTCAGAAATATATAAATCTAGGCTCATGAGAACTATGTAATTCTCCCATAAATCCGGGGCATCTCGAATTGTATATACCAGACTTTGAAATAATTTTTTATGTTGCAGGGATTTTCAGCAAACAACAAATCAAGAGAACTAACTNTTGTTTTA]
[+] EMBL CD164631             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TTTAGACTTCCTTTTTGTATGAACTGTCTTTATTCTACATCTCTGGTGGGTCAATTAGTCCCTTTAGGTTTTGCAGATGC TTTCAAGGTGAAATAGTAAGTTGATTTTTCCCTAAGATCCTCACGTGTCCACACTTGTATAATAAAATACCTTGATAACAGTATTCATCACTTGCTTCATCCATGGTCTTGGCCTATATTGACCTAGATATTCTATAGTAAGCTCTGTCACCACTTTCTTTGATGTCTTTTGTTATCCATGACAATTAGATTAACACAATCAGCCCCAAACAATATTAGGGGAACAAATAAGTAAGTTCCTGTTCTAGTTACTGAAACTCAGAAATATATAAATCTAGGCTCATGAGAACTATGTAATTCTCCCATAAATCCGGGGCATCTCGAATTGTATATACCAGACTTTGAAATAATTTTTTATGTTGCAGGGATTTTCAGCAAACAACAAATCAAGAGAACTAACTTTTGTTTT ]
[+] EMBL CD164628             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      cTTAGACTTCCTTTTTGTATGAACTGTCTTTATTCTACATCTCTGGTGGGTCAATTAGTCCCTTTAGGTTTTGCAGATGC TTTCAAGGTGAAATAGTAAGTTGATTTTTCCCTAAGATCCTCACATGTCCACACTTGTATAATAAAATACCTTGATAACAGTATTCATCACTTGCTTCATCCATGGTCTCTGCCTATATTGACCTAGATATTCTATAGTAAGCTCTGTCACCACTTTCTTTGATGTCTTTTGTTATCCATGACAATCAGATTAACACAATCAGCCCCAAACAATATTAGGGGAACAAATAAGTAAGTTCCTGTTCTAGTTACTGAAACTCAGAAATATATAAATCTAGGCTCATGAGAACTATGTAATTCTCCCATAAATCCGGGGCATCTCGAATTGTATATACCAGACTTTGAAATAATTTTTTATGTTGCAGGGATTTTCAGCAAACAACAAATCAAGAGAACTAACTTTTGTTTTA]
[+] EMBL CD164618             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      cTTAGACTTCCTTTTTGTATGAACTGTCTTTATTCTACATCTCTGGTGGGTCAATTAGTCCCTTTAGGTTTTGCAGATGC TTTCAAGGTGAAATAGTAAGTTGATTTTTCCCTAAGATCCTCACATGTCCACACTTGTATAATAAAATACCTTGATAACAGTATTCATCACTTGCTTCATCCATGGTCTTGGCCTATATTGACCTAGATATTCTATAGTAAGCTCTGTCACCACTTTCTTTGATGTCTTTTGTTATCCATGACAATCAGATTAACACAATCAGCCCCAAACAATATTAGGGGAACAAATAAGTAAGTTCCTGTTCTAGTTACTGAAACTCAGAAATATATAAATCTAGGCTCATGAGAACTATGTAATTCTCCCATAAATCCGGGGCATCTCGAATTGTATATACCAGACTTTGAAATAATTTTTTATGTTGCAGGGATTTTCAGCAAACAACAAATCAAGAGAACTAACTTTTGTTTTA]




>consensus_10678#0
AGAATCAGTAACATTATCCATTACTTTGTGACCTAATTACGTAACTTAAGAGGAGTGTTA
TGTCTTCTGATGTTATTCTAAATTATTACGAGTCCCTTCTGCACAGAGATGACCTAGATA
CTTTGAAGGAGGGTTGCTTCGTCAATGACAACATAATCACATTCCAGCTTGAGTATCTGC
GCCATACAAAATTAAGTCACTCGTCAAATATTCTTCTTATGGATCCAGCAGCATCTCAAC
TTTTAAAACTGATGGATGAGGAATCAATTAGATTGGTGCTGGATCCTTTAGAATTCAAGT
CAAAGGATTGGATATTTTTAGTGATCAATGATTCTGCTTCACGAGTTTCATCTGGTGGAT
GTCATTGGTCACTGCTGGTTTATTCACCACATCTTATGCACAGTTTTTACCTGGACTCCT
TAAACTCTAGTCCTAATTTTTCAGAGGCAATCACTTTGTGTAACAAGTTATGCACCTATT
TAGGTATTTCTTTTGTAGACATAAAGCTACCTAATGTCCTAAAGCAAAATAACGGATATG
ATTGTGGAATATTTTGCATGGTATTCATAGAAATAATATGTGATATGATATTGAAGGGTG
ATACGTCCTGGCAGATGAGTCTGTCCACTGACATGGTTTCCCATCAAGTGATGCACAAAA
GGAAATCGTTGCTAGAGTGTATCTATGGCTTATCCACAGCAAATGCGTAGGCTTTTCGTC
AAGGTTTCTAGAAGAATCGTGACCCAGCAAACATAAGCAGACCTGAGTTCTGTTTGGCGT
TTTCCATTTACAGACTCTTCATGTGTTAAATTTTATCCTAATATACACTGTAAAAAAATA
TTTCTTCTGTTCACAAGTTGTAGCCAACTATGCGTTTGTCTGGTTGGGGTCATTACGCAG
ACGGAGATTAGGGTGTATTTAGACTTCCTTTTTGTATGAACTGTCTTTATTCTACATCTC
TGGTGGGTCAATTAGTCCCTTTAGGTTTTGCAGATGCTTTCAAGGTGAAATAGTAAGTTG
ATTTTTCCCTAAGATCCTCACATGTCCACACTTGTATAATAAAATACCTTGATAACAGTA
TTCATCACTTGCTTCATCCATGGTCTTGGCCTATATTGACCTAGATATTCTATAGTAAGC
TCTGTCACCACTTTCTTTGATGTCTTTTGTTATCCATGACAATCAGATTAACACAATCAG
CCCCAAACAATATTAGGGGAACAAATAAGTAAGTTCCTGTTCTAGTTACTGAAACTCAGA
AATATATAAATCTAGGCTCATGAGAACTATGTAATTCTCCCATAAATCCGGGGCATCTCG
AATTGTATATACCAGACTTTGAAATAATTTTTTATGTTGCAGGGATTTTCAGCAAACAAC
AAATCAAGAGAACTAACTTTTGTTTTA

consensusID : consensus_10678#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 527
fasta sequence

                              [AGGAGTACTTGCGTTATAAGAATCAGTAACATTATCCATTACTTTGTGACCTAATTACGTAACTTAAGAGGAGTGTTATGTCTTCTGATGTTATTCTAAATTATTACGAGTCCCTTCTAAGGAGGGTTGCTTCGTCAATGACAACATAATCACATTCCAGCTTGAGTATCTGCGCCATACAAAATTAAGTCACTCGTCAAATATTCTTCTTATGGATCCAGCAGCATCTCAACTTTTAAAACTGGTGCTGGATCCTTTAGAATTCAAGTCAAAGGATTGGATATTTTTAGTGATCAATGATTCTGCTTCACGAGTTTCATCTGGTGGATGTCATTGGTCACTGCTGGTTTATTCACCACATCTTATGCACTAGTCCTAATTTTTCAGAGGCAATCACTTTGTGTAACAAGTTATGCACCTATTTAGGTATTTCTTTTGTAGACATAAAGCTACCTAATGTCCTAAAGCAAAATAACGGATATGATTGTGGAATATTTTGCATGGTATTCATAGAANNNNNNNNNNNN]

[+] EMBL CD080993             [AGGAGTACTTGCGTTATAAGAATCAGTAACATTATCCATTACTTTGTGACCTAATTACGTAACTTAAGAGGAGTGTTATGTCTTCTGATGTTATTCTAAATTATTACGAGTCCCTTCTAAGGAGGGTTGCTTCGTCAATGACAACATAATCACATTCCAGCTTGAGTATCTGCGCCATACAAAATTAAGTCACTCGTCAAATATTCTTCTTATGGATCCAGCAGCATCTCAACTTTTAAAACTGGTGCTGGATCCTTTAGAATTCAAGTCAAAGGATTGGATATTTTTAGTGATCAATGATTCTGCTTCACGAGTTTCATCTGGTGGATGTCATTGGTCACTGCTGGTTTATTCACCACATCTTATGCACTAGTCCTAATTTTTCAGAGGCAATCACTTTGTGTAACAAGTTATGCACCTATTTAGGTATTTCTTTTGTAGACATAAAGCTACCTAATGTCCTAAAGCAAAATAACGGATATGATTGTGGAATATTTTGCATGGTATTCATAGAANNNNNNNNNNNN]




>consensus_10678#1
AGGAGTACTTGCGTTATAAGAATCAGTAACATTATCCATTACTTTGTGACCTAATTACGT
AACTTAAGAGGAGTGTTATGTCTTCTGATGTTATTCTAAATTATTACGAGTCCCTTCTAA
GGAGGGTTGCTTCGTCAATGACAACATAATCACATTCCAGCTTGAGTATCTGCGCCATAC
AAAATTAAGTCACTCGTCAAATATTCTTCTTATGGATCCAGCAGCATCTCAACTTTTAAA
ACTGGTGCTGGATCCTTTAGAATTCAAGTCAAAGGATTGGATATTTTTAGTGATCAATGA
TTCTGCTTCACGAGTTTCATCTGGTGGATGTCATTGGTCACTGCTGGTTTATTCACCACA
TCTTATGCACTAGTCCTAATTTTTCAGAGGCAATCACTTTGTGTAACAAGTTATGCACCT
ATTTAGGTATTTCTTTTGTAGACATAAAGCTACCTAATGTCCTAAAGCAAAATAACGGAT
ATGATTGTGGAATATTTTGCATGGTATTCATAGAANNNNNNNNNNNN

consensusID : consensus_10678#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 385
fasta sequence

                              [TCCCTAAGATCCTCACATGTCCACACTTGTATAATATAATACCTTGATAACAGTATTCATCACTTGCTTCATCCATGGTCTTGGCCTATATTGACCTAAATATTCTATAGTAAGCTCTGTCACCACTTTCTTTGATGTCTTTTGGTATCCATGACAATCATATTAACACAATCAGCCCCAAACAATATTAGGGGAACACAAAAGTCAGTTTCTGTTCTAGTTACTGAAACTCAGAAATATATAAATCTATGCTCATGAGAACTATGTAATTTTACCATAAAATTCGGGCACTCTCGGATTGTATATACCAGACTTTTGAATAATTTTTTATGTCGCACGGATTTTTAGCAAACAACACAATTAAACAACCTACCTTTGTTTTATT]

[+] EMBL CD164566             [TCCCTAAGATCCTCACATGTCCACACTTGTATAATATAATACCTTGATAACAGTATTCATCACTTGCTTCATCCATGGTCTTGGCCTATATTGACCTAAATATTCTATAGTAAGCTCTGTCACCACTTTCTTTGATGTCTTTTGGTATCCATGACAATCATATTAACACAATCAGCCCCAAACAATATTAGGGGAACACAAAAGTCAGTTTCTGTTCTAGTTACTGAAACTCAGAAATATATAAATCTATGCTCATGAGAACTATGTAATTTTACCATAAAATTCGGGCACTCTCGGATTGTATATACCAGACTTTTGAATAATTTTTTATGTCGCACGGATTTTTAGCAAACAACACAATTAAACAACCTACCTTTGTTTTATT]




>consensus_10678#2
TCCCTAAGATCCTCACATGTCCACACTTGTATAATATAATACCTTGATAACAGTATTCAT
CACTTGCTTCATCCATGGTCTTGGCCTATATTGACCTAAATATTCTATAGTAAGCTCTGT
CACCACTTTCTTTGATGTCTTTTGGTATCCATGACAATCATATTAACACAATCAGCCCCA
AACAATATTAGGGGAACACAAAAGTCAGTTTCTGTTCTAGTTACTGAAACTCAGAAATAT
ATAAATCTATGCTCATGAGAACTATGTAATTTTACCATAAAATTCGGGCACTCTCGGATT
GTATATACCAGACTTTTGAATAATTTTTTATGTCGCACGGATTTTTAGCAAACAACACAA
TTAAACAACCTACCTTTGTTTTATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10678#0      ------------------AGAATCAGTAACATTATCCATTACTTTGTGACCTAATTACGT 42
consensus_10678#1      AGGAGTACTTGCGTTATAAGAATCAGTAACATTATCCATTACTTTGTGACCTAATTACGT 60
consensus_10678#2      ------------------------------------------------------------
                                                                                   

consensus_10678#0      AACTTAAGAGGAGTGTTATGTCTTCTGATGTTATTCTAAATTATTACGAGTCCCTTCTGC 102
consensus_10678#1      AACTTAAGAGGAGTGTTATGTCTTCTGATGTTATTCTAAATTATTACGAGTCCCTTCT-- 118
consensus_10678#2      ------------------------------------------------------------
                                                                                   

consensus_10678#0      ACAGAGATGACCTAGATACTTTGAAGGAGGGTTGCTTCGTCAATGACAACATAATCACAT 162
consensus_10678#1      -----------------------AAGGAGGGTTGCTTCGTCAATGACAACATAATCACAT 155
consensus_10678#2      ---------------------------------------TCCCTAAGATCCTCA-CATGT 20
                                                              **  * * * * * * **  *

consensus_10678#0      TCCAGCTTGAGTATCTGCGCCATACAAAATTAAGTCACTCGTCAAATATTCTTCTTATGG 222
consensus_10678#1      TCCAGCTTGAGTATCTGCGCCATACAAAATTAAGTCACTCGTCAAATATTCTTCTTATGG 215
consensus_10678#2      CCACACTTGTATAA-TATAATAC-CTTGATAACAGTATTCATCACTTGCTTCATCCATGG 78
                        *   ****  **  *     *  *   ** *    * ** ***  *  *      ****

consensus_10678#0      ATCCAGCAGCATCTCAACTTTTAAAACTGATGGATGAGGAATCAATTAGATTGGTGCTGG 282
consensus_10678#1      ATCCAGCAGCATCTCAACTTTTAAAACTG------------------------GTGCTGG 251
consensus_10678#2      TCTTGGCC-TATATTGACCTAAATATTCTA-----------------------TAGTAAG 114
                            **   ** *  ** *  * *                              *   *

consensus_10678#0      ATCCTTTAGAATTCAAGTCAAAGGATTG-GATATTTTTAGTGATCA-ATGATTCTGCTT- 339
consensus_10678#1      ATCCTTTAGAATTCAAGTCAAAGGATTG-GATATTTTTAGTGATCA-ATGATTCTGCTT- 308
consensus_10678#2      CTCTGTCACCACTTTCTTTGATGTCTTTTGGTATCCATGACAATCATATTAACACAATCA 174
                        **  * *  * *    *  * *  **  * ***   *    **** ** *      *  

consensus_10678#0      --CACGAGTTTCATCTGGTGGATGTCATTGGTCACTGCTGGTTTATTCACCACATCTTAT 397
consensus_10678#1      --CACGAGTTTCATCTGGTGGATGTCATTGGTCACTGCTGGTTTATTCACCACATCTTAT 366
consensus_10678#2      GCCCCAAACAATATTAGGGGAACACAAAAGTCAGTTTCTGTTCTAGTTACTGAAACTCAG 234
                         * * *     **  ** * *    *  *     * *** * ** * **   * ** * 

consensus_10678#0      GCACAGTTTTTACCTGGACTCCTTAAACTCTAGTCCTAATTTTTCAGAGGCAATCACTTT 457
consensus_10678#1      GCAC--------------------------TAGTCCTAATTTTTCAGAGGCAATCACTTT 400
consensus_10678#2      AAATATA-----------------------TAAATCTATGCTCATGAGAACTATGTAATT 271
                         *                           **   ***   *        * **    **

consensus_10678#0      GTGTAACAAGTTATGCACCTATTTAGGTATTTCTTTTGTAGACATAAAGCTACCTAATGT 517
consensus_10678#1      GTGTAACAAGTTATGCACCTATTTAGGTATTTCTTTTGTAGACATAAAGCTACCTAATGT 460
consensus_10678#2      TTACCATAAAATTCGGGCACTCTCGGAT--------TGTATATACCAGACTTTTGAATAA 323
                        *   * **  *  *  *    *  * *        **** * *  *  **    ***  

consensus_10678#0      CCTAAAGCAAAATAACGGATATGATTGTGGAATATTTTGCATGGTATTCATAGAAATAAT 577
consensus_10678#1      CCTAAAGCAAAATAACGGATATGATTGTGGAATATTTTGCATGGTATTCATAGAANNNNN 520
consensus_10678#2      TTTTT-----TATGTCGCACGGATTTTTAGCAAACAACACAATTAAACAACCTACCTTTG 378
                         *        **  ** *     ** * * * *     **    *   *   *      

consensus_10678#0      ATGTGATATGATATTGAAGGGTGATACGTCCTGGCAGATGAGTCTGTCCACTGACATGGT 637
consensus_10678#1      NNNNNNN----------------------------------------------------- 527
consensus_10678#2      TTTTATT----------------------------------------------------- 385
                                                                                   

consensus_10678#0      TTCCCATCAAGTGATGCACAAAAGGAAATCGTTGCTAGAGTGTATCTATGGCTTATCCAC 697
consensus_10678#1      ------------------------------------------------------------
consensus_10678#2      ------------------------------------------------------------
                                                                                   

consensus_10678#0      AGCAAATGCGTAGGCTTTTCGTCAAGGTTTCTAGAAGAATCGTGACCCAGCAAACATAAG 757
consensus_10678#1      ------------------------------------------------------------
consensus_10678#2      ------------------------------------------------------------
                                                                                   

consensus_10678#0      CAGACCTGAGTTCTGTTTGGCGTTTTCCATTTACAGACTCTTCATGTGTTAAATTTTATC 817
consensus_10678#1      ------------------------------------------------------------
consensus_10678#2      ------------------------------------------------------------
                                                                                   

consensus_10678#0      CTAATATACACTGTAAAAAAATATTTCTTCTGTTCACAAGTTGTAGCCAACTATGCGTTT 877
consensus_10678#1      ------------------------------------------------------------
consensus_10678#2      ------------------------------------------------------------
                                                                                   

consensus_10678#0      GTCTGGTTGGGGTCATTACGCAGACGGAGATTAGGGTGTATTTAGACTTCCTTTTTGTAT 937
consensus_10678#1      ------------------------------------------------------------
consensus_10678#2      ------------------------------------------------------------
                                                                                   

consensus_10678#0      GAACTGTCTTTATTCTACATCTCTGGTGGGTCAATTAGTCCCTTTAGGTTTTGCAGATGC 997
consensus_10678#1      ------------------------------------------------------------
consensus_10678#2      ------------------------------------------------------------
                                                                                   

consensus_10678#0      TTTCAAGGTGAAATAGTAAGTTGATTTTTCCCTAAGATCCTCACATGTCCACACTTGTAT 1057
consensus_10678#1      ------------------------------------------------------------
consensus_10678#2      ------------------------------------------------------------
                                                                                   

consensus_10678#0      AATAAAATACCTTGATAACAGTATTCATCACTTGCTTCATCCATGGTCTTGGCCTATATT 1117
consensus_10678#1      ------------------------------------------------------------
consensus_10678#2      ------------------------------------------------------------
                                                                                   

consensus_10678#0      GACCTAGATATTCTATAGTAAGCTCTGTCACCACTTTCTTTGATGTCTTTTGTTATCCAT 1177
consensus_10678#1      ------------------------------------------------------------
consensus_10678#2      ------------------------------------------------------------
                                                                                   

consensus_10678#0      GACAATCAGATTAACACAATCAGCCCCAAACAATATTAGGGGAACAAATAAGTAAGTTCC 1237
consensus_10678#1      ------------------------------------------------------------
consensus_10678#2      ------------------------------------------------------------
                                                                                   

consensus_10678#0      TGTTCTAGTTACTGAAACTCAGAAATATATAAATCTAGGCTCATGAGAACTATGTAATTC 1297
consensus_10678#1      ------------------------------------------------------------
consensus_10678#2      ------------------------------------------------------------
                                                                                   

consensus_10678#0      TCCCATAAATCCGGGGCATCTCGAATTGTATATACCAGACTTTGAAATAATTTTTTATGT 1357
consensus_10678#1      ------------------------------------------------------------
consensus_10678#2      ------------------------------------------------------------
                                                                                   

consensus_10678#0      TGCAGGGATTTTCAGCAAACAACAAATCAAGAGAACTAACTTTTGTTTTA 1407
consensus_10678#1      --------------------------------------------------
consensus_10678#2      --------------------------------------------------