These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10681#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 335 fasta sequence [CTCGAGGCAGAA-TCGGCACG-GGGCAGAACGAGGCTGGAGAGTTTGTAGACATTTACATACCGAGAAGGTGTGCTGTTACTAACAG-GCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAAAAAGACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTATCAATATGTTAGCGGTCAGAGATGGCATGTTACCACCAAACTTTTGCGAAAGAACGTTCTCGTAAAGAACCGAATACAAAGCGTTTAATAAAGTTTGTTGAGGATCA] [+] EMBL CD084220 [CTCGAGGCAGAA TCGGCACG GGGCAGAACGAGGCTGGAGAGTTTGTAGACATTTACATACCGAGAAGGTGTGCTGTTACTAACAG GCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAAAAAGACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTATCAATATGTTAGCGGTCAGAGATGGCATGTTACCACCAAACTTTTGCGAAAGAACGTTCTCGTAAAGAACCGAATACAAAGCGTTTAATAAAGTTT ] [+] EMBL CD081406 [ ggcCANAATTCGGCACGAGGGCAGAACGAGGCTGGAGAGTTTGTAGACATTTACATACCGAGAAGGTGTGCTGTTACTAACAG GCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAAAAAGACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTATCAATATGTTAGCGGTCAGAGATGGCATGTTACCACCAAACTTTTGCGAAAGAACGTTCTCGTAAAGAACCGAATACAAAGCGTTTAATAAAGTTT ] [+] EMBL CD078024 [ GCAGAACGAGGCTGGAGAGTTTGTAGACATTTACATACCGAGAAGGTGTGCTGTTACTAACAG GCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAAAAAGACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTATCAATATGTTAGCGGTCAGAGATGGCATGTTACCACCAAACTTTTGCGAAAGAACGTTCTCGTAAAGAACCGAATACAAAGCGTTTAATAAAGTTTGTTGAG ] [-] EMBL CD075236 [ CAGAACGAGGCTGGAGAGTTTGTAGACATTTACATACCGAGAAGGTGTGCTGTTACTAACAG GCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAAAAAGACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTATCAATATGTTAGCGGTCAGAGATGGCATGTTACCACCAAACTTTTGCGAAAGAACGTTCTCGTAAAGAACCGAATACAAAGCGTTTAATAAAGTTTG ] [+] EMBL SM931 [ GGAGAGTTTGTAGACATTTACATGCCGAGAAGGTGTGCTGTTACTAACAGNGCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAAAAAGACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTATCAATATGTTAGCGGTCAGAGATGGCATGTTACCACCAAACTTTTGCGAAAGAACGTTCTCGTAAAGAACCGAATACAAAGCGTTTAATAAAGTTT ] [+] EMBL SM005 [ TGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAAAAAGACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTATCAATATGTTAGCGGTCAGAGATGGCATGTTACCACCAAACTTTTGCGAAAGAACGTTCTCGTAAAGAACCGAATACAAAGCGTTTAATAAAGTTTGTTGAGGATCA] consensusID : consensus_10681#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 322 fasta sequence [AGATTCAAAATTCGAGCAACCACGATGCAGAACGAGGCTGGAGAGTTTGTAGACATTTACATACCGAGAAGGTGTGCTGTTACTAACAGGCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAAAAAGACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTATCAATATGTTAGCGGTCAGAGATGGCATGTTACCACCAAACTTTTGCGAAAGAAC-GTTCTCGTAAAGAACCGAATACAAAGCGTTTAATA] [+] EMBL CD135152 [AGATTCAAAATTCGAGCAACCACGATGCAGAACGAGGCTGGAGAGTTTGTAGACATTTACATACCGAGAAGGTGTGCTGTTACTAACAGGCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTATAAAGACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTATCAATATGTTAGCGGTCAGAGATGGCATGTTACCACCAAACTTTTGCGAAAGAAC GTTCTCGTAAAGAACCGAATACAAAGCGTTT ] [+] EMBL CD145891 [AGATTCAAAATTCGAGCAACCACGATGCAGAACGAGGCTGGAGAGTTTGTAGACATTTACATACCGAGAAGGTGTGCTGTTACTAACAGGCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAAAAAGACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTATCAATATGTTAGCGGTCAGAGATGGCATGTTACCACCAAACTTTTGCGAAAGAAC GTTCTCGTAAAGAACCGAATACAAAGCGTTTAAT ] [+] EMBL CD187894 [ GATTCAAAATTCGAGCAACCACGATGCAGAACGAGGCTGGAGAGTTTGTAGACATTTACATACCGAGAAGGTGTGCTGTTACTAACAGGCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAAAAAGACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTATCAATATGTTAGCGGTCAAAGATGGCATTGTACCACCAAACTTTTGCGAAAGGACGGTTCTCGTAAAGACCCGAATACAAAGCGTTTAAT ] [+] EMBL CD144426 [ GATTCAAAATTCGAGCAACCACGATGCAGAACGAGGCTGGAGAGTTTGTAGACATTTACATACCGAGAAGGTGTGCTGTTACTAACAGGCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAAAAAGACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTAT ] [+] EMBL CD153696 [ GATTCAAAATTCGAGCAACCACGACGCAGAACGAGGCTGGAGAGTTTGTAGACATTTACATACCGAGAAGGTGTGCTGTTACTAACAGGCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAAAAAGACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTATCAATATGTTAGCGGTCAGAGATGGCATGTTACCACCAAACTTTTGCGAAAGAAC GTTCTCGTAAAGAACCGAATACAAAGCGTTTAAT ] [+] EMBL CD153660 [ GATTCAAAATTCGAGCAACCACGATGCAGAACGAGGCTGGAGAGTTTGTAGACATTTACATACCGAGAAGGTGTGCTGTTACTAACAGGCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAAAAAGACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTATCAATATGTTAGCGGTCAGAGATGGCATGTTACCACCAAACTTTTGCGAAAGAAC GTTCTCGTAAAGAACCGAATACAAAGCGTTTAAT ] [-] EMBL CD135052 [ GATTCAAAATTCGAGCAACCACGATGCAGAACGAGGCTGGAGAGTTTGTAGACATTTACATACCGAGAAGGTGTGCTGTTACTAACAGGCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAAAAAGACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTATCAATATGTTAGCGGTCAGAGATGGCATGTTACCACCAAACTTTTGCGAAAGAAC GTTCTCGTAAAGAACCGAATACAAAGCGTTTA ] [+] EMBL CD136555 [ GATTCAAAATTCGAGCAACCACGATGCAGAACGAGGCTGGAGAGTTTGTAGACATTTACATACCGAGAAGGTGTGCTGTTACTAACAGGCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAAAAAGACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTATCAATATGTTAGCGGTCAGAGATGGCATGTTACCACCAAACTTTTGCGANAGAAC GTTCTCGTAAAGAACCGTAT ] [-] EMBL CD145941 [ ATTCAAAATTCGTGCAACCACGATGCAGAACGAGGCTGGAGAGTTTGTAGACATTTACATACCGAGAAGGTGTGCTGTTACTAACAGGCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAAAAAGACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTATCAATATGTTAGCGGTCAGAGATGGCATGTTACCACCAAACTTTTGCGGAAGAAC GTTCTCGTAAAGAACCGAATACAAAGCGTTTAATA] [-] EMBL CD126461 [ ATTCAAAATTCGAGCAACCACGATGCAGAACGAGGCTGGAGAGTTTGTAGACATTTACATACCGAGAAGGTGTGCTGTTACTAACAGGCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAAAAAGACATATGATCTATCT ] [-] EMBL CD095474 [ ATTCAAAATTCGAGCAACCACGATGCAGAACGAGGCTGGAGAGTTTGTAGACATTTACATACCGAGAAGGTGTGCCGTTACTAACAGGCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTcg ] [+] EMBL CD161961 [ CACGATGCAGAACGAGGCTGGAGAGTTTGTAGACATTTACATACCGAGAAGGTGTGCTGTTACTAACAGGCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAAAAAGACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTATCA ] [-] EMBL CD135161 [ AACGAGGCTGGAGAGTTTGTAGACATTTACATACCGAGAAGGTGTGCTGTTACTAACAGGCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAAAAAGACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTAT AATATGTTAGCGGTCAGAGATGGCATGTTACCACCAAACTTTTGCGAAAGAAC GTTCTCGTAAAGAACCGAATACAAAGCGTTTA ] consensusID : consensus_10681#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 159 fasta sequence [TTTCTCCAGGGAGATTCGAGCAACCACGATGCAGAACGAGGCTGGAGAGTTTGTAGACATTTACATACCGAGAAGGTGTGCTGTTACTAACAGGCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTTGGACCCACCTACAGG] [+] EMBL SMAA40582 [TTTCTCCAGGGAGATTCGAGCAACCACGATGCAGAACGAGGCTGGAGAGTTTGTAGACATTTACATACCGAGAAGGTGTGCTGTTACTAACAGGCTAATTGGTGCAAAAGATCATGCTTCAATCCAGATCCAGTTTGTTGATTTGGACCCACCTACAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10681#0 -------CTCGAGGCAGAATCGGC-ACGGGGCAGAACGAGGCTGGAGAGTTTGTAGACAT 52 consensus_10681#1 ----AGATTCAAAATTCGAGCAACCACGATGCAGAACGAGGCTGGAGAGTTTGTAGACAT 56 consensus_10681#2 TTTCTCCAGGGAGATTCGAGCAACCACGATGCAGAACGAGGCTGGAGAGTTTGTAGACAT 60 * * * * *** ****************************** consensus_10681#0 TTACATACCGAGAAGGTGTGCTGTTACTAACAGGCTAATTGGTGCAAAAGATCATGCTTC 112 consensus_10681#1 TTACATACCGAGAAGGTGTGCTGTTACTAACAGGCTAATTGGTGCAAAAGATCATGCTTC 116 consensus_10681#2 TTACATACCGAGAAGGTGTGCTGTTACTAACAGGCTAATTGGTGCAAAAGATCATGCTTC 120 ************************************************************ consensus_10681#0 AATCCAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAA 172 consensus_10681#1 AATCCAGATCCAGTTTGTTGATTTGGACCCAACTACAGGACGCATGATTGGTGGGAGTAA 176 consensus_10681#2 AATCCAGATCCAGTTTGTTGATTTGGACCCACCTACAGG--------------------- 159 ******************************* ******* consensus_10681#0 AAAGACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTATCAA 232 consensus_10681#1 AAAGACATATGATCTATCTGGATCAATCCGGTCGATGGGTGAAATAGATGACTGTATCAA 236 consensus_10681#2 ------------------------------------------------------------ consensus_10681#0 TATGTTAGCGGTCAGAGATGGCATGTTACCACCAAACTTTTGCGAAAGAACGTTCTCGTA 292 consensus_10681#1 TATGTTAGCGGTCAGAGATGGCATGTTACCACCAAACTTTTGCGAAAGAACGTTCTCGTA 296 consensus_10681#2 ------------------------------------------------------------ consensus_10681#0 AAGAACCGAATACAAAGCGTTTAATAAAGTTTGTTGAGGATCA 335 consensus_10681#1 AAGAACCGAATACAAAGCGTTTAATA----------------- 322 consensus_10681#2 ------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||