These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10694#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 337 fasta sequence [TCAAAATGAGAAAACACCAACAATG--AGT-GTG-TTA-T--T-A-GTTCCGAAATGTGGACCACAGAAAGATGCACATGGTAGATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTCTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGATGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATACAGCTATTCGGAAAACAGCTGACCGTTTAAGAGATACAGGTCGG] [-] EMBL CD063254 [TCAAAATGAGAAAACACCACCAATG AGT GTG TTA T T A GTT CGAAATGT GACCACA CAAGATGCACATGGTACATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTGTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGATGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATACA ] [+] EMBL CD063151 [ aAACAATGTTAGTGGTGTTTA TTAT A GTTCCGAAATGTGGACCACAGAAAGATGCACATGGTAGATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTCTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGATGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATACAGCTATTCGG ] [+] EMBL CD063150 [ AACAATG AGT GTG TTA T TAA GTTCGAAAATGTGGACCACAGAAAGATGCACATGGTAGATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTCTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGATGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATACAGCTATTCGG ] [+] EMBL CD063061 [ AACAATG AGT GTG TTA T T A GTTCCGAAATGTGGACCACAGAAAGATGCACATGGTAGATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTCTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGTTGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATACAGCTATTCG ] [+] EMBL CD062966 [ ACAATG AGT GTG TTA T T ANGTTCGAAAATGTGGACCACAGAAAGATGCACATGGTAGATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTCTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGATGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATACAGCTATTCGG ] [+] EMBL CD063101 [ ACAATG AGT GTG TTA T T A GATTCGAAATGTGTACCACAGCAAGATGCACATGGTAGATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTCTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGATGGTGATGATCTTGTCAAAGAAATAATAAAAAAAGCACGTAAACGTATTGATACAGCTATTCGG ] [+] EMBL CD063043 [ ACAATG AGT GTG TTA T T ANGTT CGAAATGTGGACCACAGAAAGATGCACATGGTAGATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTCTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGATGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATACAGCTATTCG ] [+] EMBL CD063093 [ CAATG AGT GTG TTANT T A GTTCGAAAATGTGGACCACAGAAAGATGCACATGGTAGATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTCTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGATGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATACAGCTATTCG ] [+] EMBL CD063172 [ CAATG AGT GTG TTA T T ANGTTCCAAAATGTGGACCACAGAAAGATGCACATGGTAGATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTCTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGATGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATACAGCTATTCGG ] [+] EMBL CD063127 [ T A GTTTCAAAATGGTGACCACAGAAAGATGCACATGGTAGATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTCTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGATGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGACACAGCTATTCGG ] [+] EMBL CD193962 [ GTTTCTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGATGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATACAGCTATTCGCAAAACAGCTGACCGTTTAAGAGATACAGGTCGG] consensusID : consensus_10694#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 293 fasta sequence [ACAATGAGTGTGTTATTAGTTCGAAATGTGACCACAGAAGATGCACATGG-TAGATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTCTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGATGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATACAGCTATTCGGAGCTATTCGGG] [+] EMBL CD063211 [ACAATTTGTGTGTTATTAGTTCCAAATGTGACCACAGAAGATGCACATGG TAGATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTCTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGATGGGGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATAC ] [-] EMBL CD063111 [ CAATGAGTGTGTTATTAGTTCGAAATGTGACCACAGAAGATGCACATGG TAGATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTCTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGATGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATACAGCTATTCGGAGCTATTCGGG] [-] EMBL CD063170 [ CAATGAGTGTGTTATTAGTTCGAAATGTGACCCCAGAAGATGCACATGG TAGATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTCTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCGTCAGATTCTCAAACTAGTGATGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATACAGCTATTCGGAGCAATTCGGa] [-] EMBL CD063242 [ CAATGAGTGTGTTATTAGTTCGAAATGTGACCACAGAAGATGCACATGG TAGATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTCTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGATGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATACAGCTATTCGGA ] [-] EMBL CD063011 [ CAATGAGTGTGTTATTAGTTCGAAATGTGACCACAGAAGATGCACATGG TAGATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTCTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGATGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATACAGCTATTCGG ] [-] EMBL CD063166 [ CAATGAGTGTGTTATTAGTTCGAAATGTGACCACAGAAGATGCACATGG TAGATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTCTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGATGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATACAGCTATTCGG ] [-] EMBL CD063222 [ CAATGAGTGTGTTATTAGTTCGAAATGTGACCCCAGAAGATGCACATGG TAGATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTCTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGATGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATGCA ] [-] EMBL CD063223 [ ACATGG TAGATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTCTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGATGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATACAGCTATTCGGA ] [+] EMBL CD063105 [ CATGGCTTTATACATATGTTATGTACCAAACAGGCTAGGTTCAGCACGTGTTTCTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGATGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATACATCTATTCGG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10694#0 TCAAAATGAGAAAACACCAACAATGAGTGTGTTATTAGTTCCGAAATGTGGACCACAGAA 60 consensus_10694#1 -------------------ACAATGAGTGTGTTATTAGTTC-GAAATGTG-ACCACAGAA 39 ********************** ******** ********* consensus_10694#0 AGATGCACATGGTAGATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTC 120 consensus_10694#1 -GATGCACATGGTAGATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTC 98 *********************************************************** consensus_10694#0 TACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTA 180 consensus_10694#1 TACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTA 158 ************************************************************ consensus_10694#0 TGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGA 240 consensus_10694#1 TGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGA 218 ************************************************************ consensus_10694#0 TGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATACAGCTAT 300 consensus_10694#1 TGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATACAGCTAT 278 ************************************************************ consensus_10694#0 TCGGAAAACAGCTGACCGTTTAAGAGATACAGGTCGG 337 consensus_10694#1 TCGGAGCTATTCGGG---------------------- 293 ***** * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||