These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10766#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1728 fasta sequence [TGGTTGATGGCAAACAACTGACTTTAAAGATTGT-TCAGTGTTAGTTCTTATAAATCCTGGAGGAAGACATTCGATTATTGAATAAACATCAGTACAGACATTGGTCAAAACAAAAATAAGATAACTTCAAAAGATGAAATTAGTAGGAGATATCTATTTTTCAGAAAAAGTAGAAATCAAAACTCATGTGATGGACAGTTTTATATAAATATGTGTATCTTTAAAATAAAAAAACACCTAAATATCTTCAGAGATTTGGTAGAGATAAACATTTTCCAGGAGGTATTACTGGTTTAGTTCTAAAGTGTGGCGATAGTAGGAAATCCTGTGACACTGGCCAGAGCGGAATTCAATGCCATACTTCGATTAGCCGAAATGGCGAACAAAGGAATATGGTAATACTTGCATGGTACACGTGTACATCGACCTTTAGCAGCATCGCGACATACAGTCACACGTCCTTGATTAACTTCCACATTTTCGTCAACTAGATGGACGTAACGGCACTCAGAGTTACGACGACATTTGCCAGCTTTAAAATCACGACATATCGGCAA-TGTTTCCAACAAATGGCCTTTTTCATTAATGTAAGCCACATTGGTCATTGGATTCGTTGAACAAAAGCTGGTCCCATATAGTCCAGACGAGAGATGTCCTAATGCACCCGGAACTGGACATGATGAATCCAAAACGCAGCCATGATTTTGAAGAGCAGGGATCGGAGGTAATCGTGAAGTGTCGTTTTGTGACAAATAGCCCACTGCTGCCACTTGTGCAGCAGTTAGATGAGCTTGTTGACTTCGAAGAATAAGTGACAACAACAGAGCTTGTTGCTGGTGTTGAAAAGTATTACTTGAAGCATTTGTATGAACATCATGAGCTGGAGGTTGATGGGCTGCTGCCAAAGCTGTGGCGGAGGTTAAGGTGGAAGACGGTACATATGAT-GAATACAAACCAGATCCAGGTAACTGCTGATTCGATACTGTCGACAACTGAGTTCGTAACAATTGATGAGACTGCAGTTGTTGTTGCTGTTGTATTAAAAAGTTATTTAGCGCTAATGCTGCAGCTGCTGAAGACATTGGATTAGGTGCATCACAACCATTGTTCATGGAATATAATGGTGGATATATGAATTGTGATGGAGTGTAAAGTGATGGAGCAGGTTGTGAAGAAAACGGAAGACCGTAAATACTCATACTTAACGGATTTAACATATTCGTTACCTCAGGATTAACATGAGATGTTCCTATATCTGTACAAGAATTTATTGGGGTAAGCCCAGGATTGAAAGACCCACAAGAGAGAAAGGTAGGAAATGAAGTTACAGAATCAGGCATATGACATTTTGTTTCACCATTTTGACAAGACCTTTCCAGTTTTTCGTCACCGTTACATGCGACAGTTGATTCTTTATTCTGACTTGTTCCGTCTAATGAAGATGAGGTAGACAAATTTGCTCGTTTTGTAGGTAACCATTTCTCAGAAGCAACTGAAGAGGATGTATCATTATTGATTGTTGACTTAGAAATAACCGAATCATGAGGAAACATTGAGCTTGAAGATAGTGTAGATGATGTTGGCAACACACCAGCAGCTTGATTTGCCTGTTGTAGGACAGCTGCCGCTGCTAATAACGCTGATGCACTTAAAGATGTCGGGTCAGGTGCAGAATTTAGAGGAGTTAAGTATGTTCTATAAACTGATCCCCTTTCCATCCCTNCAANT] [+] EMBL CD115226 [TGGTTGATGGCAAACAACTGACTTTAAAAATTGT TCAGTGTTAGTTCTTATAAATCCTGGAGGAAGACATTCGATTATTGAATAAACATCAGTACAGACATTGGTCAAAACAAAAATAAGATAACTTCAAAAGATGAAATTAGTAGGAGATATCTATTTTTCAGAAAAAGTAGAAATCAAAACTCATGTGATGGACAGTTTTATATAAATATGTGTATCTTTAAAATAAAAAAACACCTAAATATCTTCAGAGATTTGGTAGAGATAAACATTTTCCAGGAGGTATTACTGGTTTAGTTCTAAAGTGTGGCGATAGTAGGAAATCCTGTGACACTGGCCAGAGCGGAATTCAATGCCATACTTCGATTAGCCGAAATGGCGAACAAAGGAATATGGTAATACTTGCATGGTACACGTGTACATCGACCTTTAGCAGCATCGCGACATACAGTCACACGTCCTTGATTAACTTCCACATTTTCGTCAACTAGATGGACGTAACGGCACTCAGAGTTACGACGACATTTGCCAGCTNT AAATCACGACATATCGGGCA TGTTTCCAACANATGGCCTTTTTCATTAATGTAAGCCACATTGGTCATTGGATTCGTTGAACANAAGCTGGTCCCATATAGTCCAGACGAGAGATGTCCCTATGCACCCCGGACTGGACAT ] [-] EMBL CD154201 [TGGTTGATGGCNAACAACTGACTTNAAAGA TGTCNNAGTGTTAGTTCNTATAAATCCTGGAGGAAGACATTCGATTATTGAATAAACATCAGTACAGACATTGGTCAAAACAAAAATAAGATAACTTCAAAAGATGAAATTAGTAGGAGATATCTATTTNTCAGAAAAAGTAGAAATCAAAACTCATGTGATGGACAGTTTTATATAAATATGTGTATCTTTAAAATAAAAAAACACCTAAATATCTTCAGAGATTTGGTAGAGATAAACATTTTCCAGGAGGTATTACTGGTTTAGTTCTAAAGTGTGGCGATAGTAGGAAATCCTGTGACACTGGCCAGAGCGGAATTCAATGCCACACTTCGATTAGCCGAAATGGCGAACAAAGGAATATGGTAATACTTGCATGGTACACGTGTACATCGACCTTTAGCAGCATCGCGACATACAGTCACACGTCCTTGATTAACTTCCACATTTTCGTCAACTAGATGGACGTAACGGCACTCAGAGTTACGACGACATTTGCCAGCTTTAAAATCACGACATATCGGCAA TGTTTCCAACAAATGGCCTTTTTCATTAATGTAAGCCACATTGGTCATTGGATTCGTTGAACAAAAGCTGGTCCCATATAGTCCAGACGAGAGATGTCCTAA ] [+] EMBL CD115818 [TGGTTGATGGCAAACAACTGACTTTAAAGATTGT TCAGTGTTAGTTCTTATAAATCCTGGAGGAAGACATTCGATTATTGAATAAACATCAGTACAGACATTGGTCAAAACAAAAATAAGATAACTTCAAAAGATGAAATTAGTAGGAGATATCTATTTTTCAGAAAAAGTAGAAATCAAAACTCATGTGATGGACAGTTCTATATAAATATGTGTATCTTTAAAATAAAAAAACACCTAAATATCTTCAGAGATTTGGTAGAGATAAACATTTTCCAGGAGGTATTACTGGTTTAGTTCTAAAGTGTGGCGATAGTAGGAAATCCTGTGACACTGGCCAGAGCGGAATTCAATGCCATACTTCGATTAGCCGAAATGGCGAACAAAGGAATATGGTAATACTTGCATGGTACACGTGTACATCGACCTTTAGCAGCATCGCGACATACAGTCACACGTCCTTGATTAACTTCCACATTTTCGTCAACTAGATGGACGT ] [-] EMBL CD115874 [ GGTTGATGGCAAACAATTGAC TTAAAGGTTGT TCAGTGTTAGTTCTTATAAATCCTGGAGGAAGACATTCGATTATTGAATAAACATCAGTACAGACATTGGTCAAAACAAAAATAAGATAACTTCAAAAGATGAAATTAGTAGGAGATATCTATTTTTCAGAAAAAGTAGAAATCAAAACTCATGTGATGGACAGTTTTATAGAAATATGTGTATCTTTAAAATAAAAAAACACCTAAATATCTTCAGAGATTTGGTAGAGATAAACATTTTCCAGGAGGTATTACTGGTTTAGTTCTAAAGTGTGGCGATAGTAGGAAATCCTGTGACACTGGCCAGAGCGGAATTCAATGCCATACTTCGATTAGCCGAAATGGCGAACAAAGGAATATGGTAATACTTGCATGGTACACGTGTACATCGGCCTTTAGCAGCATCGCGACATACAGTCACACGTCCTTGATTAACTTCCACATTTTCGTCAACTAGATGGACGTAACGGCACTCAGAGTTACGACGTCATTTGCCAGCTTTAAAATCACGACATATCGGCAA TGTTTCCAACAAATGGCCTTTTTCATTAATGTAAGCCACATTGGTCATTGGATTCGTTGAACAAAAGCTGGTCCCATATAGTCCAGACGAGAGATGTCCTAA ] [-] EMBL CD115479 [ gtaATGGCAAACAACTGGC TTAAAGGTGGT TCAGTGGTAGTTCTTATAAATCCTGGAGGAAGACATTCGATTAGTGAATAAACATCAGTACAGACATTGGTCAAAACAGAAATAAGATAACTCCGAAAGATGAAATTAGTAGGAGATATCTA TTTTCAGAAAAAGTAGAAATCAAAACTCATGTGATGGACAGTTTTATAGAAATATGTGTATCTTTAAAATAAAAGAACACCTAAATATCTTCAGAGATTTGGTAGAGATAAACATTTTCCAGGAGGTATGACTGGTTTAGTTCTAAAGTGTGGCGATAGTAGGAAATCCTGTGACACTGGCCAGAGCGGAATTCAATGCCATACTTCGATTAGCCGAAATGGCGAACAAAGGAATATGGTAATACTTGCATGGTACACGTGTACATCGGCCTTTAGCAGCATCGCGACATACAGTCACACGTCCTTGATTAACTTCCACATTTTCGTCAACTAGATGGACGTAACGGCACTCAGAGTTACGACGTCATTTGCCAGCTTTAAAATCACGACATATCGGCAACTGTTTCCAACAAATGGCCT ] [-] EMBL CD151672 [ ATTTGGTAGAGAT AACATTTTCCAGGAGGTATTACTGGTTTAGTTCTAAAGTGTGGCGATAGTAGGAAATCCTGTGACACTGGCCAGAGCGGAATTCAATGCCATACTTCGATTAGCCGAAATGGCGAACAAAGGAATATGGTAATACTTGCATGGTACACGTGTACATCGACCTTTAGCAGCATCGCGACATACAGTCACACGTCCTTGATTAACTTCCACATTTTCGTCAACTAGATGGACGTAACGGCACTCAGAGTTACGACGACATTTGCCAGCTTTAAAATCACGACATATCGGCAA TGTTTCCAACAAATGGCCTTTTTCATTAATGTAAGCCACATTGGTCATTGGATTCGTTGAACAAAAGCTGGTCCCATATAGTCCAGACGAGAGATGTCCTAATGCACCCGGAACTGGACATGATGAATCCAAAACGCAGCCATGATTTTGAAGAGCAGGGTTCGGAGGTAATCGTGAAGTGTCGTTTTGTGACAAATAGCCCACTGCTGCCACTTGTGCAGCAGTTAGATGAGCTTGTTGACTTCGAAGAATAAGTGACAGCA ] [-] EMBL CD115744 [ TGGTAGAGAT AACATTTTCCAGGAGGTATTACTGGTTTAGTTCTACAGTGTGGCGATAGTAGGAAATCCTGTGACACTGGCCAGAGCGGAATTCAATGCCATACTTCGATTAGCCGAAATGGCGAACAAAGGAATATGGTAATACTTGCATGGTACACGTGTACATCGACCTTTAGCAGCATCGCGACATACAGTCACACGTCCTTGATTAACTTCCACATTTTCGTCAACTAGATGGACGTAACGGCACTCAGAGTTACGACGACATTTGCCAGCTTTAAAATCACGACATATCGGCAA TGTTTCCAACAAATAGCCATTTTCATTAATGTAAGCCACATTGGTCATTGGATTCGTTGAACAAAAGCTGGTCCCATATAGTCCAGACGAGAGATGTCCTAATGCACCCGGAACTGGACATGA ] [+] EMBL CD162846 [ CAATGCCATACTTCGATTAGCCGAAATGGCGAACAAAGGAATATGGTAATACTTGCATGGTACACGTGTACATCGACCTTTAGCAGCATCGCGACATACAGTCACACGTCCTTGATTAACTTCCACATTTTCGTCAACTAGATGGACGTAACGGCACTCAGAGTTACGACGACATTTGCCAGCTTTAAAATCACGACATATCGGCAA TGTTTCCAACAAATGGCCTTTTTCATTAATGTAAGCCACATTGGTCATTGGATTCGTTGAACAAAAGCTGGTCCCATATAGTCCAGACGAGAGATGTCCTAATGCACCCGGAACTGGACATGATGAATCCAAAACGCAGCCATGATTTTGAAGAGCAGGGATCGGCGGTAATCGTGAAGTGTCGTTTTGTGACAAATAGCCCACTGCTGCCACTTGTGCAGCAGTTAGATGAGCTTGTTGACTTCGAAGAATAAGTGACAACAACAGAGCTTGTTGCTGGTGTTGAAAAGTATTACTTGAAGCAT ] [-] EMBL CD162752 [ AATGCCATACTTCGATTAGCCGAAATGGCGAACAAAGGAATATGGTAATACTTGCATGGTACACGTGTACATCGACCTTTAGCAGCATCGCGACATACAGTCACACGTCCTTGATTAACTTCCACATTTTCGTCAACTAGATGGACGTAACGGCACTCAGAGTTACGACGACATTTGCCAGCTTTAAAATCACGACATATCGGCAA TGTTTCCAACAAATGGCCTTTTTCATTAATGTAAGCCACATTGGTCATTGGATTCGTTGAACAAAAGCTGGTCCCATATAGTCCAGACGAGAGATGTCCTAATGCACCCGGAACTGGACATGATGAATCCAAAACGCAGCCATGATTTTGAAGAGCAGGGATCGGCGGTAATCGTGAAGTGTCGTTTTGTGACAAATAGCCCACTGCTGCCACTTGTGCAGCAGTTAGATGAGCTTGTTGACTTCGAAGAATAAGTGACAACAACAGAGCTTGTTGCTGGTGTTGAAAAGTATTACTTGAAGCATc ] [+] EMBL CD063496 [ ATGGCGAACAAAGGAATATGGTAATACTTGCATGGTACACGTGTACATCGACCTTTAGCAGCATCGCGACATACAGTCACACGTCCTTGATTAACTTCCACATTTTCGTCAACTAGATGGACGTAACGGCACTCAGAGTTACGACGACATTTGCCTGCTTTAAAATCACGACATATCGGCAA TGTTTCCAACAAATGGCCTTTTTCATTAATGTAAGCCACATTGGTCATTGGATTCGTTGAACAAAAGCTGGTCCCATATAGTCCAGACGAGAGATGTCCTAATGCACCCGGAACTGGACATGATGAATCCAAAACGCAGCCATGATTTTGAAGAGCAGGGATCGGAGGTAATCGTGAAGTGTCGTTTTGTGACAAATAGCCCACTGCTGCCACTTGTGCAGCAGTTAGATGAG ] [-] EMBL CD116197 [ ACCTTTAGCAGCATCGCGACATACAGTCACACGTCCTTGATTAACTTCCACATTTTCGTCAACTAGATGGACGTAACGGCACTCAGAGTTACGACGACATTTGCCAGCTTTAAAATCACGACATATCGGCAA TGTTTCCAACAAATGGCCTTTTTCATTAATGTAAGCCACATTGGTCATTGGATTCGTTGAACAAAAGCTGGTCCCATATAGTCC ] [-] EMBL BG931269 [ TCGGAGGTAATCGTGAAGTGTCGTTTTGTGACAAATAGCCCACTGCTGCCACTTGTGCAGCAGTTAGATGAGCTTGTTGACTTCGAAGAATAAGTGACAACAACAGAGCTTGTTGCTGGTGTTGAAAAGTATTACTTGAAGCATTTGTATGAACATCATGAGCTGGAGGTTGATGGGCTGCTGCCAAAGCTGTGGCGGAGGTTAAGGTGGAAGACGGTACATATGAT GAATACAAACCAGAT ] [+] EMBL CD164796 [ AGCAGTTAGATGAGCTTGTTGACTTCGAAGAATAAGTGACAACAACAGAGCTTGTTGCTGGTGTTGAAAAGTATTACTTGAAGCATTTGTATGAACATCATGAGCTGGAGGTTGATGGGCTGCTGCCAAAGCTGTGGCGGAGGTTAAGGTGGAAGACGGTACATATGAT GAATACAAACCAGATCCAGGTAACTGCTGATTCGATACTGTCGACAACTGAGTTCGTAACAATTGATGAGACTGCAGTTGTTGTTGCTGTTGTATTAAAAAGTTATTTAG ] [-] EMBL CD116937 [ CATAT ATGGAATACAACCCAGATCCAGGTAACTGCTGATTAGATACTGTGGACAACTGAGTTCGTAACAATTGATGAGACTGCAGTTGTTGTTGCTGTTGTATTAAAAAGTTATTTAGCGCTAATGCTGCAGCTGCTGAAGACATTGGATTAGGTGCATCACAACCATTGTTCATGGAATATAATGGTGGATATATGAATTGTGATGGAGTGTAAAGTGATGGAGCAGGTTGTGAAGAAAACGGAAGACCGTAAATACTCATACTTAACGGATTTAACATATTCGTTACCTCAGGATTAACATGAGATGTTCCTATATCTGTACAAGAATTTATTGGGGTAAGCCCAGGATTGAAAGACCCACAAGAGAGAAAGGTAGGAAATGAAGTTACAGAATCAGGCATATGACATTTTGTTTCACCATTTTGACAAGACCTTTCCAGTTTTTCGTCAC ] [+] EMBL CD178488 [ AAGTTACAGAATCAGGCATATGACATTTTGTTTCACCATTTTGACAAGACCTTTCCAGTTTTTCGTCACCGTTACATGCGACAGTTGATTCTTTATTCTGACTTGTTCCGTCTAATGAAGATGAGGTAGACAAATTTGCTCGTTTTGTAGGTAACCATTTCTCAGAAGCAACTGAAGAGGATGTATCATTATTGATTGTTGACTTAGAAATAACCGAATCATGAGGAAACATTGAGCTTGAAGATAGTGTAGATGATGTTGGCAACACACCAGCAGCTTGATTTGCCTGTTGTAGGACAGCTGCCGCTGCTAATAACGCTGATGCACTTAAAGATGTCGGGTCAGGTGCAGAATTTAGAGGAGTTAAGTATGTTCTATAAACTGATCCCCTTTCCATCCCTNCAANT] consensusID : consensus_10766#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 789 fasta sequence [CAAACATGTTACGAGCATTGCAATTATTAAAGCTTAAGAATTTTGACTCAGAAGCAACTGAAGAGGATGTATCATTATTGATTGTTGACTTAGAAATAACCGAATCATGAGGAAACATTGAGCTTGAAGATAGTGTAGATGATGTTGGCAACACACCAGCAGCTTGATTTGCCTGTTGTAGGACAGCTGCCGCTGCTAATAACGCTGATGCACTTAAAGATGTCGGGTCAGGTGCAGAATTTAGA-GGAGTTAAGTATGTTCCATAAACTGATCCCCCAACAGTTGATTGAAGTAATGTGGTAGGTGGCCATCTAAGACTTGAAGGGCAACTAGCTACTGAACTGAGAATGGGTAAACCAGTCGGTAGCGTCTGTTGTAGCGGTTGCATTGGAATGAGATTGGAAGTTCCTAACTCCGACAAACGTTGTTGATTTTCCAATAGTTTCCTTTGTTCATCGCCACGTTTAATAATAGCTTCAATTTGGTGTGGTGGTGGGTGATAATATTTACAGTGAGAAAACTTGCAGAGTTTCCTTTTAATGAAGTCGTAACACACTGTTACATAGCCGTTTTCTACTCGGACAGTTACAGGTGGGTGAGCGTAAGGACATGTACTTCCCAAAACACAACAATGAAAGTTTGATTCGTTTTCATTTTGACAGCTTGTAGTAGATGAGCACTCATTTTTTGTACTAGTGTCTTCCAACTTTATAGAACATTTATTTCCAATGTTTACGGGCTCTTTCTCAGATCTGATAGTATTATTTTGCAAAGGTGAGTTAGATGTTC] [+] EMBL CD116132 [CAAACATGTTACGAGCATTGCAATTATTAAAGCTTAAGAATTTTGACTCAGAAGCAACTGAAGAGGATGTATCATTATTGATTGTTGACTTAGAAATAACCGAATCATGAGGAAACATTGAGCTTGAAGATAGTGTAGATGATGTTGGCAACACACCAGCAGCTTGATTTGCCTGTTGTAGGACAGCTGCCGCTGCTAATAACGCTGATGCACTTAAAGATGTCGGGTCAGGTGCAGAATTTAGA GGAGTTAAGTATGTTCCATAAACTGATCCCCCAACAGTTGATTGAAGTAATGTGGTAGGTGGCCATCTAAGACTTGAAGGGCAACTAGCTACTGAACTGAGAATGGGTAAACCAGTCGGTAGCGTCTGTTGTAGCGGTTGCATTGGAATGAGATTGGAAGTTCCTAACTCCGACAAACGTTGTTGATTTTCCAATAGTTTCCTTTGTTCATCGCCACGTTTAATAATAGCTTCAATTTGGTGTGGTGGTGGGTGATAATATTTACAGTGAGAAAACTTGCAGAGTTTCCTTTTAATGAAGTCGTAACACACTGTT ] [-] EMBL CD116075 [ TGATGCACTTAAAGATGTCGGGTCAGGTGCAGAA TTAGAGGGAGTTAAGTATGTTCCATAAACTGATCCCCCAACAGTTGATTGAAGTAATGTGGTAGGTGGCCATCTAAGACTTGAAGGGCAACTAGCTACTGAATTGAGAATGGGTAAACCAGTCGGTAGCGTCTGTTGTAGCGGTTGCATTGGAATGAGATTGGAAGTTCTTAACTCCGACAAACGTTGTTGATTTTCCAATAGTTTCCTTTGTTCATCGCCACGTTTAATAATAGCTTCAATTTGGTGTGGTGGTGGGTGATAATATTTACAGTGAGAAAACTTGCAGAGTTTCCTTTTAATGAAGTCGTAACACACTGTTACATAGCCGTTTTCTACTCGGACAGTTACAGGTGGGTGAGCGTAAGGACATGTACTTCCCAAAACACAACAATGAAAGTTTGATTCGTTTTCATTTTGACAGCTTGTAGTAGATGAGCACTCATTTTTTGTACTAGTGTCTTCCAACTTTATAGAACATTTATTTCCAATGTTTACGGGCTCTTTCTCAGATCTGATAGTATTATTTTGCAAAGGTGAGTTAGATGTTC] [+] EMBL CD149594 [ TAACACACTGTTACATAGCCGTTTTCTACTCGGACAGATACAGGTGGGTGAGCGTAAGGACATGTACTTCCCAAAACACAACAATGAAAGTTTGATTCGTTTTCATTTGGA ] consensusID : consensus_10766#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 637 fasta sequence [AGACTATTCNTAATTGATTAAAGTAAAAGAAAAGATTATCAAAATACTGAATAAATTTGGGACGAGAAAAAAATTAAGAGAAAATGACGTTGGCAAAACATGGTTGATGGCAAACAACTGACTTTAAAGATTGTTCAGTGTTAGTTCTTATAAATCCTGGAGGAAGACATTCGATTATTGAATAAACATCAGTACAGACATTGGTCAAAACAAAAATAAGATAACTTCAAAAGATGAAATTAGTAGGAGATATCTATTTTTCAGAAAAAGTAGAAATCAAAACTCATGTGATGGACAGTTTTATATAAATATGTGTATCTTTAAAATAAAAAAACACCTAAATATCTTCAGAGATTTGGTAGAGATAAACATTTTCCAGGAGGTATTACTGGTTTAGTTCTAAAGTGTGGCGATAGTAGGAAATCCTGTGACACTGGCCAGAGCGGAATTCAATGCCATACTTCGATTAGCCGAAATGGCGAACAAAGGAATATGGTAATACTTGCATGGTACACGTGTACATCGACCTTTAGCAGCATCGCGACATACAGTCACACGTCCTTGATTAACTTCCACATTTTCTATTAAGTTAGGGAAAAATAGTAATGTTAGTTCATTATAACCAATCTGGCATTTT] [-] EMBL CD078403 [AGACTATTCNTAATTGATTAAAGTAAAAGAAAAGATTATCAAAATACTGAATAAATTTGGGACGAGAAAAAAATTAAGAGAAAATGACGTTGGCAAAACATGGTTGATGGCAAACAACTGACTTTAAAGATTGTTCAGTGTTAGTTCTTATAAATCCTGGAGGAAGACATTCGATTATTGAATAAACATCAGTACAGACATTGGTCAAAACAAAAATAAGATAACTTCAAAAGATGAAATTAGTAGGAGATATCTATTTTTCAGAAAAAGTAGAAATCAAAACTCATGTGATGGACAGTTTTATATAAATATGTGTATCTTTAAAATAAAAAAACACCTAAATATCTTCAGAGATTTGGTAGAGATAAACATTTTCCAGGAGGTATTACTGGTTTAGTTCTAAAGTGTGGCGATAGTAGGAAATCCTGTGACACTGGCCAGAGCGGAATTCAATGCCATACTTCGATTAGCCGAAATGGCGAACAAAGGAATATGGTAATACTTGCATGGTACACGTGTACATCGACCTTTAGCAGCATCGCGACATACAGTCACACGTCCTTGATTAACTTCCACATTTTCTATTAAGTTAGGGAAAAATAGTAATGTTAGTTCATTATAACCAATCTGGCATTTT] [+] EMBL CD115705 [ AACTCATGTGATGGACAGTCATATATAAATATGTGTATCTGTAAAATAAAAAAACACCTAAATATCTTCAGAGATTTGGTAGAGATAAAC ] consensusID : consensus_10766#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 270 fasta sequence [AGTACAAAAAATGAGTGCTCATCTACTACAAGCTGTCAAAATGAAAACGAATCAAACTTTCATTGTTGTGTTTTGGGAAGTACATGTCCTTACGCTCACCCACCTGTAACTGTCCGAGTAGAAAACGGCTATGTAACAGTGTGTTACGACTTCATTAAAGTGAGTTTATCCGTACTGTTCAGTCATACTGTGTTTCATTTTTAGTTGTATCCTTGTATTGTTTTTGTAGTGTTTAGCCACCAGTTGTGTTGTGATGATGCTTGGACTGAT] [+] EMBL CD202696 [AGTACAAAAAATGAGTGCTCATCTACTACAAGCTGTCAAAATGAAAACGAATCAAACTTTCATTGTTGTGTTTTGGGAAGTACATGTCCTTACGCTCACCCACCTGTAACTGTCCGAGTAGAAAACGGCTATGTAACAGTGTGTTACGACTTCATTAAAGTGAGTTTATCCGTACTGTTCAGTCATACTGTGTTTCATTTTTAGTTGTATCCTTGTATTGTTTTTGTAGTGTTTAGCCACCAGTTGTGTTGTGATGATGCTTGGACTGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10766#0 ------------------------------------------------------------ consensus_10766#2 -AGACTATTCNTAATTGATTAAAGTAAAAGAAAAGATTATCAAAATACTGAATAAATTTG 59 consensus_10766#1 CAAACATGTTACGAGCATTGCAATTATTAAAGCTTAAGAATTTTGACTCAGAAGCAACTG 60 consensus_10766#3 ------------------------------------------------------------ consensus_10766#0 -----------------------------------------TGGTTGATGGCAAACAACT 19 consensus_10766#2 GGACGAGAAAAAAATTAAGAGAAAATGACGTTGGCAAAACATGGTTGATGGCAAACAACT 119 consensus_10766#1 AAGAGGATGTATCATTATTGATTGTTGACTTAGAAATAAC-CGAATCATGAGGAAACATT 119 consensus_10766#3 ------------------------------------------------------------ consensus_10766#0 GACTTTAAAGATTGTTCAGTGTTAGTTCTTATAAATCCTGGAGGAAGACAT-TCGATTAT 78 consensus_10766#2 GACTTTAAAGATTGTTCAGTGTTAGTTCTTATAAATCCTGGAGGAAGACAT-TCGATTAT 178 consensus_10766#1 GAGCTTGAAGATAGTGTAGATGATGTTGGCAACACACCAGCAGCTTGATTTGCCTGTTGT 179 consensus_10766#3 -------------------------------------------------AGTACAAAAAA 11 * consensus_10766#0 TGAATAAACATCAGTACAGACATTGGTCAAAACAAAAATAAGATAA-CTTCAAAAGATGA 137 consensus_10766#2 TGAATAAACATCAGTACAGACATTGGTCAAAACAAAAATAAGATAA-CTTCAAAAGATGA 237 consensus_10766#1 AGGACAGCTGCCGCTGCTAATAACGCTGATGCACTTAAAGATGTCG-GGTCAGGTGCAGA 238 consensus_10766#3 TGAGTGCTCATC--TACTACAAGCTGTCAAAATGAAAACGAATCAAACTTTCATTGTTGT 69 * * * * * * * ** * * * * consensus_10766#0 AATTAGTAGGAGATATCTATTTTTCAGAAAAAGTAGAAATCAAAACTCATGTGATGGACA 197 consensus_10766#2 AATTAGTAGGAGATATCTATTTTTCAGAAAAAGTAGAAATCAAAACTCATGTGATGGACA 297 consensus_10766#1 ATTTAG-AGGAGTTAAGTATGTTCCATAAACTG-ATCCCCCAACAGTTGATTGAAGTAAT 296 consensus_10766#3 GTTTTG--GGAAGTACATGTCCTTACGCTCACCCACCTGTAACTGTCCGAGTAGAAAACG 127 ** * *** ** * * * * * * * consensus_10766#0 GTTTTATATAAATATGTGTATCTTTAAAATAAAAAAACACCTAAATATCTTCAGAGATTT 257 consensus_10766#2 GTTTTATATAAATATGTGTATCTTTAAAATAAAAAAACACCTAAATATCTTCAGAGATTT 357 consensus_10766#1 GTGGTAGGTGGCCATCTAAGACTTGAAGGGCAACTAGCTACTGAAC-TGAGAATGGGTAA 355 consensus_10766#3 GC--TATGTAACAGTGTGTTACGACTTCATTAAAGTGAGTTTATCCGTACTGTTCAGTCA 185 * ** * * * * ** * * * consensus_10766#0 GGTAGAGATAAACATTTTCCA-GGAGGTATTACTGGTTTAGTTCTAAAGTGTGGCGATAG 316 consensus_10766#2 GGTAGAGATAAACATTTTCCA-GGAGGTATTACTGGTTTAGTTCTAAAGTGTGGCGATAG 416 consensus_10766#1 ACCAGTCGGTAGCGTCTGTTGTAGCGGTTGCATTGGAATGAGATTGGAAGTTCCTAACTC 415 consensus_10766#3 TACTGTGTTT--CATTTTT---AGTTGTATCCTTGTATTGTTTTTGTAGTGTTTAGCCAC 240 * * * * * ** ** * * * * consensus_10766#0 TAGGAAATCCTGTGACACTGGCCAGAG----CGGAATTCAATGCCATACTTCG-ATTAGC 371 consensus_10766#2 TAGGAAATCCTGTGACACTGGCCAGAG----CGGAATTCAATGCCATACTTCG-ATTAGC 471 consensus_10766#1 CGACAAACGTTGTTGATTTTCCAATAGTTTCCTTTGTTCATCGCCACGTTTAATAATAGC 475 consensus_10766#3 CAGTTG-TGTTGTGATGATGCTTGGACTGAT----------------------------- 270 *** * * consensus_10766#0 CGAAATGGCGAACAAAGGAATATGGTAATACTTGCAT--GGTACACGTGTACA-TCGACC 428 consensus_10766#2 CGAAATGGCGAACAAAGGAATATGGTAATACTTGCAT--GGTACACGTGTACA-TCGACC 528 consensus_10766#1 TTCAATTTGGTGTGGTGGTGGGTGATAATATTTACAGTGAGAAAACTTGCAGAGTTTCCT 535 consensus_10766#3 ------------------------------------------------------------ consensus_10766#0 TTTAGCAGCATCGCGACATACAGTCACACGTCCTTGATTAACTTCCACATTTTCG--TCA 486 consensus_10766#2 TTTAGCAGCATCGCGACATACAGTCACACGTCCTTGATTAACTTCCACATTTTCTATTAA 588 consensus_10766#1 TTTAATGAAGTCGTAACACACTGTTACATAGCCGTTTTCTACTCGGACAGTTAC-----A 590 consensus_10766#3 ------------------------------------------------------------ consensus_10766#0 ACTAGATGGACGTAACGGCACTCAGA-GTTACGACGACATTTGCCAGCTTTAAAATCACG 545 consensus_10766#2 GTTAGGGAAAAATAGTAATGTTAGTTCATTATAACCA-ATCTGGCATTTT---------- 637 consensus_10766#1 GGTGGGTGAGCGTAAGGACATGTACTTCCCAAAACACAACAATGAAAGTTTGATTCGTTT 650 consensus_10766#3 ------------------------------------------------------------ consensus_10766#0 ACATATCGGCAATGTTTCCAACAAATGGCCTTTTTCATTAATGTAAGCCACATTGGTCAT 605 consensus_10766#2 ------------------------------------------------------------ consensus_10766#1 TCATTTTGACAGCTTGTAGTAGATGAGCACTCATTTTTTGTACTAGTGTCTTCCAACTTT 710 consensus_10766#3 ------------------------------------------------------------ consensus_10766#0 TGGATTCGTTGAACAAAAGCTGGTCCCATATAGTCCAGACGAGAGATGTCCTAATGCACC 665 consensus_10766#2 ------------------------------------------------------------ consensus_10766#1 ATAGAACATTTATTTCCAATGTTTACGGGCTCTTTCTCAGATCTGATAGTATTAT-TTTG 769 consensus_10766#3 ------------------------------------------------------------ consensus_10766#0 CGGAACTGGACATGATGAATCCAAAACGCAGCCATGATTTTGAAGAGCAGGGATCGGAGG 725 consensus_10766#2 ------------------------------------------------------------ consensus_10766#1 CAAAGGTGAGTTAGATGTTC---------------------------------------- 789 consensus_10766#3 ------------------------------------------------------------ consensus_10766#0 TAATCGTGAAGTGTCGTTTTGTGACAAATAGCCCACTGCTGCCACTTGTGCAGCAGTTAG 785 consensus_10766#2 ------------------------------------------------------------ consensus_10766#1 ------------------------------------------------------------ consensus_10766#3 ------------------------------------------------------------ consensus_10766#0 ATGAGCTTGTTGACTTCGAAGAATAAGTGACAACAACAGAGCTTGTTGCTGGTGTTGAAA 845 consensus_10766#2 ------------------------------------------------------------ consensus_10766#1 ------------------------------------------------------------ consensus_10766#3 ------------------------------------------------------------ consensus_10766#0 AGTATTACTTGAAGCATTTGTATGAACATCATGAGCTGGAGGTTGATGGGCTGCTGCCAA 905 consensus_10766#2 ------------------------------------------------------------ consensus_10766#1 ------------------------------------------------------------ consensus_10766#3 ------------------------------------------------------------ consensus_10766#0 AGCTGTGGCGGAGGTTAAGGTGGAAGACGGTACATATGATGAATACAAACCAGATCCAGG 965 consensus_10766#2 ------------------------------------------------------------ consensus_10766#1 ------------------------------------------------------------ consensus_10766#3 ------------------------------------------------------------ consensus_10766#0 TAACTGCTGATTCGATACTGTCGACAACTGAGTTCGTAACAATTGATGAGACTGCAGTTG 1025 consensus_10766#2 ------------------------------------------------------------ consensus_10766#1 ------------------------------------------------------------ consensus_10766#3 ------------------------------------------------------------ consensus_10766#0 TTGTTGCTGTTGTATTAAAAAGTTATTTAGCGCTAATGCTGCAGCTGCTGAAGACATTGG 1085 consensus_10766#2 ------------------------------------------------------------ consensus_10766#1 ------------------------------------------------------------ consensus_10766#3 ------------------------------------------------------------ consensus_10766#0 ATTAGGTGCATCACAACCATTGTTCATGGAATATAATGGTGGATATATGAATTGTGATGG 1145 consensus_10766#2 ------------------------------------------------------------ consensus_10766#1 ------------------------------------------------------------ consensus_10766#3 ------------------------------------------------------------ consensus_10766#0 AGTGTAAAGTGATGGAGCAGGTTGTGAAGAAAACGGAAGACCGTAAATACTCATACTTAA 1205 consensus_10766#2 ------------------------------------------------------------ consensus_10766#1 ------------------------------------------------------------ consensus_10766#3 ------------------------------------------------------------ consensus_10766#0 CGGATTTAACATATTCGTTACCTCAGGATTAACATGAGATGTTCCTATATCTGTACAAGA 1265 consensus_10766#2 ------------------------------------------------------------ consensus_10766#1 ------------------------------------------------------------ consensus_10766#3 ------------------------------------------------------------ consensus_10766#0 ATTTATTGGGGTAAGCCCAGGATTGAAAGACCCACAAGAGAGAAAGGTAGGAAATGAAGT 1325 consensus_10766#2 ------------------------------------------------------------ consensus_10766#1 ------------------------------------------------------------ consensus_10766#3 ------------------------------------------------------------ consensus_10766#0 TACAGAATCAGGCATATGACATTTTGTTTCACCATTTTGACAAGACCTTTCCAGTTTTTC 1385 consensus_10766#2 ------------------------------------------------------------ consensus_10766#1 ------------------------------------------------------------ consensus_10766#3 ------------------------------------------------------------ consensus_10766#0 GTCACCGTTACATGCGACAGTTGATTCTTTATTCTGACTTGTTCCGTCTAATGAAGATGA 1445 consensus_10766#2 ------------------------------------------------------------ consensus_10766#1 ------------------------------------------------------------ consensus_10766#3 ------------------------------------------------------------ consensus_10766#0 GGTAGACAAATTTGCTCGTTTTGTAGGTAACCATTTCTCAGAAGCAACTGAAGAGGATGT 1505 consensus_10766#2 ------------------------------------------------------------ consensus_10766#1 ------------------------------------------------------------ consensus_10766#3 ------------------------------------------------------------ consensus_10766#0 ATCATTATTGATTGTTGACTTAGAAATAACCGAATCATGAGGAAACATTGAGCTTGAAGA 1565 consensus_10766#2 ------------------------------------------------------------ consensus_10766#1 ------------------------------------------------------------ consensus_10766#3 ------------------------------------------------------------ consensus_10766#0 TAGTGTAGATGATGTTGGCAACACACCAGCAGCTTGATTTGCCTGTTGTAGGACAGCTGC 1625 consensus_10766#2 ------------------------------------------------------------ consensus_10766#1 ------------------------------------------------------------ consensus_10766#3 ------------------------------------------------------------ consensus_10766#0 CGCTGCTAATAACGCTGATGCACTTAAAGATGTCGGGTCAGGTGCAGAATTTAGAGGAGT 1685 consensus_10766#2 ------------------------------------------------------------ consensus_10766#1 ------------------------------------------------------------ consensus_10766#3 ------------------------------------------------------------ consensus_10766#0 TAAGTATGTTCTATAAACTGATCCCCTTTCCATCCCTNCAANT 1728 consensus_10766#2 ------------------------------------------- consensus_10766#1 ------------------------------------------- consensus_10766#3 ------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||