These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1077#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 713 fasta sequence [AGATAAAAGAAGACACTTTAAACAAATGCAAATTTAACTTTGAAGGCGTGAACAATTCTAAGTCAGAAAATTTAAACGGTCATTCTACAGATGCCAATAAGGAACTAAATAATGTAAATACCAATGTTCTTTACTTGATTCCAATGGGTTTTATTATACAATGGAGAAAATTTACTCGAAATCCAACAGCAGATAATTTACCTAGTTCGCTATTATCTGGTTTTAGCTCGGATGGCGTGCTTTGTGAACATGGTCGAATGCTAAAAACATGGCAAGCTCTTATAAATGAGTCAACATTGTATCCCTTGACTTTTTATGAATGGGATGTCTTGTCTCACGCATATCCTCATCATTTGAAGGAAAACGAAATACCTTCGGATCATGATGGACCGGAACCAAAAATAACTTTCTATCCAACGATGTATTTACTTCCACAGAATGATTCTGAACTGAAGTGGAGATTGGAACCATCTTCCTATGGCACTTTATGCCCGAATTGTCAATCTGAGATAATCTATGATCAGATTTTTAATAACGCTAGAATCCGTATACGTCTAGTAACTGGATTTGATGAAGCATTGAGTAGTTGTGTCCAGTCGAAACTCACCTCCGTTCAGGATTCCTTGAATTGTGTGTCACAGGATTTTCAAGCTGACACAGAAATTTGTTCTCAACCAACAACTGACGTCATAATTCCGAAACTTCTGATCAGG] [+] EMBL CD187727 [AGATAAAAGAAGACACTTTAAACAAATGCAAATTTAACTTTGAAGGCGTGAACAATTCTAAGTCAGAAAATTTAAACGGTCATTCTACAGATGCCAATAAGGAACTAAATAATGTAAATACCAATGTTCTTTACTTGATTCCAATGGGTTTTATTATACAATGGAGAAAATTTACTCGAAATCCAACAGCAGATAATTTACCTAGTTCGCTATTATCTGGTTTTAGCTCGGATGGCGTGCTTTGTGAACATGGTCGAATGCTAAAAACATGGCAAGCTCTTATAAATGAGTCAACATTGTATCCCTTGACTTTTTATGAATGGGATGTCTTGTCTCACGCATATCCTCATCATTTGAAGGAAAACGAAATACCTTCGGATCATGATGGACCGGAACCAAAAATAACTTTCTATCCAACGATGTATTTACTTCCACAGAATGATTCTGAACTGAAGTGGAGATTGGAACCATCTTCCTATGGCACTTTATGCCCGAATTGTCAATCTGAGATAATCTATGATCAGATTTTTAATAACGCTAGAATCCGTATACGTCTAGTAACTGGATTTGATGAAGCATTGAGTAGTTGTGTCCAGTCGAAACTCACCTCCGTTCAGGATTCCTTGAATTGTGTGTCACAGGATTTTCAAGCTGACACAGAAATTTGTTCTCAACCAACAACTGACGTCATAATTCCGAAACTTCTGATCAGG] consensusID : consensus_1077#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 503 fasta sequence [CTATTATTTAAAAAGTATTAATTTTCCATACTGAACTAAGCAGGAGGGAATCATCATACAAATTGATATACTTTCGATTATATTACAGATCCTAATCATGAGCTTATTCATGATAATACCATTGTGCACTATTCGAGTCCGATGGCTTATATTATACAATTGAAAAAATTTACTCTCTAATCCTACATTACATAATGTACCTACATCGCTATAATATGATTTTACCTACAATGGCGTGCTTTGTGAACATGGTCGAATGCTAAAAACATGGCAAGCTCTTATAAATGAGTCAACATTGTATCCCTTGACTTTTTATGAATGGGATGTCTTGTCTCACGCATATCCTCATCATTTGAAGGAAAACGAAATACCTTCGGATCATGATGGACCGGAACCAAAAATAACTTTCTATCCAACGATGTATTTACTTCCACAGAATGATTCTGAACTGAAGTGGAGATTGGAACCATCTTCCTATGGCACTTTATGCCCGAATTGTCAAT] [+] EMBL CD187737 [CTATTATTTAAAAAGTATTAATTTTCCATACTGAACTAAGCAGGAGGGAATCATCATACAAATTGATATACTTTCGATTATATTACAGATCCTAATCATGAGCTTATTCATGATAATACCATTGTGCACTATTCGAGTCCGATGGCTTATATTATACAATTGAAAAAATTTACTCTCTAATCCTACATTACATAATGTACCTACATCGCTATAATATGATTTTACCTACAATGGCGTGCTTTGTGAACATGGTCGAATGCTAAAAACATGGCAAGCTCTTATAAATGAGTCAACATTGTATCCCTTGACTTTTTATGAATGGGATGTCTTGTCTCACGCATATCCTCATCATTTGAAGGAAAACGAAATACCTTCGGATCATGATGGACCGGAACCAAAAATAACTTTCTATCCAACGATGTATTTACTTCCACAGAATGATTCTGAACTGAAGTGGAGATTGGAACCATCTTCCTATGGCACTTTATGCCCGAATTGTCAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1077#0 AGATAAAAGAAGACACTTTAAACAAATGCAAATTTAACTTTGAAGGCGTGAACAATTCTA 60 consensus_1077#1 CTATTATTTAAAAAGTATTAATTT--TCCATACTGAACTAAGCAGGAGGGAATCATCATA 58 ** * ** * **** * ** * * **** * *** * *** ** ** consensus_1077#0 AGTCAGAAAATTTAAACGGTCATTCTACAGATGCCAATAAGGAACTAAATAATGTAAATA 120 consensus_1077#1 CAAATTGATATACTTTCGATTATATTACAGATCCTAATCATGAGCTTATTCATGATAATA 118 * ** ** * ** ******* * *** * ** ** * * *** **** consensus_1077#0 CCAATGTTCTTTACTTGATTCCAATGGGTTTTATTATACAATGGAGAAAATTTACTCGA- 179 consensus_1077#1 CCATTGTGCACTATTCGAGTCCGATGGCTTATATTATACAATTGAAAAAATTTACTCTCT 178 *** *** * ** * ** *** **** ** *********** ** *********** consensus_1077#0 AATCCAACAGCAGATAATTTACCTAGTTCGCTATTATCTGGTTTTAGCTCGGATGGCGTG 239 consensus_1077#1 AATCCTACATTACATAATGTACCTACATCGCTATAATATGATTTTACCTACAATGGCGTG 238 ***** *** * ***** ****** ******* ** ** ***** ** ******** consensus_1077#0 CTTTGTGAACATGGTCGAATGCTAAAAACATGGCAAGCTCTTATAAATGAGTCAACATTG 299 consensus_1077#1 CTTTGTGAACATGGTCGAATGCTAAAAACATGGCAAGCTCTTATAAATGAGTCAACATTG 298 ************************************************************ consensus_1077#0 TATCCCTTGACTTTTTATGAATGGGATGTCTTGTCTCACGCATATCCTCATCATTTGAAG 359 consensus_1077#1 TATCCCTTGACTTTTTATGAATGGGATGTCTTGTCTCACGCATATCCTCATCATTTGAAG 358 ************************************************************ consensus_1077#0 GAAAACGAAATACCTTCGGATCATGATGGACCGGAACCAAAAATAACTTTCTATCCAACG 419 consensus_1077#1 GAAAACGAAATACCTTCGGATCATGATGGACCGGAACCAAAAATAACTTTCTATCCAACG 418 ************************************************************ consensus_1077#0 ATGTATTTACTTCCACAGAATGATTCTGAACTGAAGTGGAGATTGGAACCATCTTCCTAT 479 consensus_1077#1 ATGTATTTACTTCCACAGAATGATTCTGAACTGAAGTGGAGATTGGAACCATCTTCCTAT 478 ************************************************************ consensus_1077#0 GGCACTTTATGCCCGAATTGTCAATCTGAGATAATCTATGATCAGATTTTTAATAACGCT 539 consensus_1077#1 GGCACTTTATGCCCGAATTGTCAAT----------------------------------- 503 ************************* consensus_1077#0 AGAATCCGTATACGTCTAGTAACTGGATTTGATGAAGCATTGAGTAGTTGTGTCCAGTCG 599 consensus_1077#1 ------------------------------------------------------------ consensus_1077#0 AAACTCACCTCCGTTCAGGATTCCTTGAATTGTGTGTCACAGGATTTTCAAGCTGACACA 659 consensus_1077#1 ------------------------------------------------------------ consensus_1077#0 GAAATTTGTTCTCAACCAACAACTGACGTCATAATTCCGAAACTTCTGATCAGG 713 consensus_1077#1 ------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||