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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10770#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 774 fasta sequence
[GAGCAATACACAATATATAATTACTTTAAAAATATAAGTGACTTATTTTACACTCTAAATGTATACTGCCAAGAAAATC-GAAACATCCAAAGTTAATGGGCGAAGTTCATTAAAATTTTATAGAAAAAGATAAAGTAACAAAGTAATATAGTTCTGTTTTGATTCGAAATCGAAATAAAATA-TTCTGACGTAGTATTCTTTCATG-CATTTGTA-CGATAAATGATGAAGGAATGCTGATTGATTTTAAAATGAAACGAACAGTTTGGAATATGTGTATAAGTTGTCCAATATGAACCTCTGACAATAGTTACATGCCAATGACGACCATATGTCGTGTCAAGCCATCTTTTAAGTTTTTCTGAAGCTTCCTT-CTCTATAAATTTATCTTGTGGTTGAGTAAGCCTATAAGCTTCTTCTGATATTTTTATTTGATCTTGTAATGGTAG-TTCTTGCATGATTACAAAGATTTCAGGTCGTAGACCCGTTGTAGGTATTCCGTACAATGGTCTATTGATTATAGCTTGATGTCTTTCTGGCTGAACTCCAAGAACCTCACAAAATCTCCGAAAAGTTATCTTCCCTGTTCCTTCAGGATCGAATAGTGCTTGCCATTTCGGTATCATTTCTTTATCTAAATGATTTTCTGCAACATAATTACGTAATTCATTAATTGTAATAACATTAACTCCTCGTTTGTCAATAGCACCAAATGTAGTAATGAATGGTT-CCATGATTTTGTATTTTCAACGTTCCTTTCCCTTCTTCTTCTTCTTC]
[+] EMBL AA883015 [GAGCAATACACAATATATAATTACTTTAAAAATATATGTGACTTATTTTACACTCTAAATGTATACTGCCAAGAAAATCGGAAACATCCAAAGTTAATGGGCGAAGTTCATTAAAATTTTAT ]
[+] EMBL AA999348 [ ACACAATATATAATTACTTTAAAAATATAAGGGACTTATTTTACACTCNAAATGTAAACTGCCAAGAAAATC GGAACATCCAAAGTTAATGGGAGAAGTTCATTAAAATTTTATAGAAAAAGATAAAGTAACAAAGTGATATAGGTCCGTTTTGATTCGAAATCGAAATAAAATA TTCTGACGGAGTATTCTTTCATG CATTTGTA CGATAAATGATGAAGGAATGCTGATTGATTTTAAAATGCAACGGACAGTTTGGNATATGTGTAAAAGGTGGCC ATAT ]
[+] EMBL SMAA43893 [ ACACAATATATAATTACTTTAAAAATATAAGTGACTTATTTTACACTCTAAATGTATACTGCCAAGAAAATC GAAACATCCAAAGTTAATGGGCGAAGTTCATTAAAATTTTATAGAAAAAGATAAAGTAACAAAGTAATATAGTTCTGTTTTGATTCGAAATCGAAATAAAATA TTCTGACGTAGTATTCTTTCATG CATTTGTA CGATAAATGATGA ]
[+] EMBL SMAA43865 [ ACACAATATATAATTACTTTAAAAATATAAGTGACTTATTTTACACTCTAAATGTATACTGCCAAGAAAATC GAAACATCCAAAGTTAATGGGCGAAGTTCATTAAAATTTTATAGAAAAAGATAAAGTAACAAAGTAATATAGTTCTGTTTTGATTCGAAATCGAAATAAAATA TTCTGACGTAGTATTCTTTCATG CATTTGTA CGATAAATGATGAAGGAATGCTGATTGATTTTAAAATGAAACGAACAGTTTGGAATATGTGTATAAGTTGTCCAATATGAACCTC GACAATAGTTACATGCCAATGACGACCATATGTCGTGTCAAGCCATCTTTTAAGTTTTTCTGAAGCTTCCTT CTCTAT ]
[+] EMBL SMAA43856 [ ACACAATATATAA TNCTTT AAAANATAAGTGACTTATTTTACACTCTAAATGTATACTGCCAAGAAAATC GAAACATCCAAAGTTAATGGGCGAAGTTCATTAAAATTTTATAGAAAAAGATAAAGTAACAAAGTAATATAGTTCTGTTTTGATTCGAAATCGAAATAAAATA TTCTGACGTAGTATTCTTTCATG CATTTGTA CGATAAATGATGAAGGAATGCTGATTGATTTTAAAATGAAACGAACAGTTTGGAATATGTGTAAAAGgtngccc ]
[+] EMBL CD086894 [ TC GAAACATCCAAAGTTAATGGGCGAAGTTCATTAAAATTTTATAGAAAAAGATAAAGTAACAAAATAATATAGTTCTGTTTTGATTCGAAATCGAAATAAAATA TTCTGACGTAGTATTCTTTCATG CATTTGTA CGATAAATGATGAAGGAATGCTGATTGATTTTAAAATGAAACGAACAGTTTGGAATATGTGTATAAGTTGTCCAATATGAACCTCTGACAATAGTTACATGCCAATGACGACCATATGTCGTGTCAAGCCATCTTTTAAGTTTTTCTGAA ]
[-] EMBL AA559617 [ AAATCGAAATAAAANATTTCNGACGTAGTATTCTTTCATGCCATTTGTAGCGATAAATGATGAAGGAATGCTGATTGATTTTAAAATGAAACGAACAGTTTGGAATATGTGTATAAGTTGTCCAATATGAACCTCTGACAATAGTTACATGCCAAAGACGACCATATGTCGTGTCAAGCCATCTTTTAAGTTTTTCTGAAGCTTCCTTCCTCTATAAATTTATCTTGTGGTTGAGTAAGCCTATAAGCTTCTTCTGATATTTTTATTTGATCTNGTAATGGTAGTTTCTT ]
[-] EMBL CD086568 [ g caCTGACGTAGTATTCTTTCATG CATTTGTA CGATAAATGATGAAGGAATGCTGATTGATTTTAAAATGAAACGAACAGTTTGGAATATGTGTATAAGTTGTCCAATATGAACCTCTGACAATAGTTACATGCCAATGACGACCATATGTCGTGTCAAGCCATCTTTTAAGTTTTTCTGAAGCTTCCTT CTCTATAAATTTATCTTGTGGTTGAGTAAGCCTATAAGCTTCTTCTGATATTTTTATTTGATCTTGTAATGGTAG TTCTTGCATGATTACAAAGATTTCAGGTCGTAGACCCGTTGTAGGTATTCCGTACAATGGTCTATTGATTATAGCTTGATGTCTTTCTGGCTGAACTCCAAGAACCTCACAAAATCTCCGAAAAGTTATCTTCCCTGGTCagtgca ]
[+] EMBL CD089921 [ ATGCCAATGACGACCATATGTCGTGTCAAGCCATCTTTTAAGTTTTTCTGAAGCTTCCTT CTCTATAAATTTATCTTGTGGTTGAGTAAGCCTATAAGCTTCTTCTGATATTTTTATTTGATCTTGTAATGGTAG TTCTTGCATGATTACAAAGATTTCAGGTCGTAGACCCGTTGTAGGTATTCCGTACAATGGTCTATTGATTATAGCTTGATGTCTTTCTGGCTGAACTCCAAGAACCTCACAAAATCTCCGAAAAGTTATCTTCCCTGTTCCTTCAGGATCGAATAGTGCTTGCCATTTCGGTATCATTTCTTTATCTAAATGATTTTCTGCAACATAATTACGTAATTCATTAATTGTAATAACATTAACTCCTCGTTTGTCAATAGCACCAAATGTAGTAATGAATGGTT CCATGATTTTGTATTTTCAACGTTCCTTTCCCTTCTTCTTCTTCTTC]
[-] EMBL CD088432 [ ACCATATGTCGTGTCAAGCCATCTTTTAAGTTTTTCTGAAGCTTCCTT CTCTATAAATTTATCTTGTGGTTGAGTAAGCCTATAAGCTTCTTCTGATATTTTTATTTGATCTTGTAATGGTAG TTCTTGCATGATTACAAAGATTTCAGGTCGTAGACCCGTTGTAGGTATTCCGTACAATGGTCTATTGATTATAGCTTGATGTCTTTCTGGCTGAACTCCAAGAACCTCACAAAATCTCCGAAAAGTTATCTTCCCTGTTCCTTCAGat ]
[-] EMBL CD088427 [ ACCATATGTCGTGTCAAGCCATCTTTTAAGTTTTTCTGAAGCTTCCTT CTCTATAAATTTATCTTGTGGTTGAGTAAGCCTATAAGCTTCTTCTGATATTTTTATTTGATCTTGTAATGGTAG TTCTTGCATGATTACAAAGATTTCAGGTCGTAGACCCGTTGTAGGTATTCCGTACAATGGTCTATTGATTATAGCTTGATGTCTTTCTGGCTGAACTCCAAGAACCTCACAAAATCTCCGAAAAGTTATATTCCCTGTTCCTTCAGat ]
[-] EMBL CD088466 [ ACCATATGTCGTGTCAAGCCATCTTTTAAGTTTTTCTGAAGCTTCCTT CTCTATAAATTTATCTTGTGGTTGAGTAAGCCTATAAGCTTCTTCTGATATTTTTATTTGATCTTGTAATGGTAG TTCTTGCATGATTACAAAGATTTCAGGTCGTAGACCCGTTGTAGGTATTCCGTACAATGGTCTATTGATTATAGCTTGATGTCTTTCTGGCTGAACTCCAAGAACCTCACAAAATCTCCGAAAAGTTATCTTCCCTGTTCCTTCAGat ]
[+] EMBL CD091721 [ ATAAACTTCTTCTGATATTTTTATTTGATCTTGTAATGGTAG TTCTTGCATGATTACAAAGATTTCAGGTCTTTAACCCGTTGTAGGTATTCCGTACAGTGGCCTATTGATTATAGCTTGATGTCTTTCTGGCTGAACTCCAAGAACCTCACAAAATCTCCGAAAAGTTATCTTCCCTGTTCCTTCAGGATCGAATAGGGCTTGCCATTTCGGTATCATCTCTTTATCTAAATGATTTTCTGCAACATAATCACGTAATCCATCAATTGTAATAACATTAACTCCTCGTTTGTCTATTGCACCAAATGTAGTAATGAATG ]
[+] EMBL CD091716 [ ATAAGCTTCTTCTGATATTTTTATTAGATCTTGTAATGGTAG TTCTTGCATGATCACAAAGATTTCAGGTCGTACACCCGTTGTAGGTACTCCGTACAATGGTCTATGGATTATAGCTTGATGTCTTTCTGGCTGAACTCCAAGAACCTCACAAAATCTCCGAAAAGTTATCTTCCCTGTTCCTTCAGGATCGAATAGTGCTTGCCATTTCGGTATCATTTCTTTATCTAAATGATTTTCTGCAACATAATTACGTAATTCATTAATTGTAATAACATTAACTCCTCGTGTGTCAATAGTACCAAATGTAGTAATGAATGGTT CCATGATGTTGTATTTTCAACGAACCTTTCCCTTCTTCTTCTTCTT ]
[-] EMBL AA559400 [ TGGTAG TTCTTGCATGATTACAAAGATTTCAGGTCGTAGACCCGTTGTAGGTATTCCGTACAATGGTCTATTGATTATAGCTTGATGTCTTTCTGGCTGAACTCCAAGAACCTCACAAAATCTCCGAAAAGTTATCTTCCCTGTTCCTTCAGGATCGAATAGTGCTTGCCATTTCGGTATCATTTCTTTATCTAAATGATTTTCTGCAACATAATTACGTAATTCATTAATTGTAATAACATTAACTCCTCGTTTGTCAATAGCACCAAATGTAGTAATGAATGGTTNCCA ]
[-] EMBL AA566207 [ GTA TCAGTAC AT GTCTATCGA TATAGC TGATGTC TTCT GCTGAACTCC AG ACC C CNAAATCTCCGAAAAGTTATCTTCCCTGTTCCTTCAGGATCGAATAGTGCTTGCCATTTCGGTATCATTTCTTTATCTAAATGATTTTCTGCAACATAATTACGTAATTCATTAATTGTAATAACATTAACTCCTCGTTTGTCAATAGCACCAAATGTAGTAATGAATGGTT CCATGATTTTGTATTTTCAACGTTCCTT ]
[-] EMBL AA559490 [ TTCTTTATCTAAANGATTTTCTGCAACATAANTACGTAATTCATTAATTGTAATAACATNAACTCCTCGTTTGTC ]
consensusID : consensus_10770#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 362 fasta sequence
[CGCAGATGCACTCAGTATGCTAGTCATAATTATGAAGTAGTCACATGTAGTCGTGATCGATCGATAATTCTGACGTGATCTTCATGCATGTACGATAATGATGAGATGCTGATGATTTCGAAATGAACGACAGTTGATATGGATGGATGTCCAATATGAACCTCTGAC-ATAGTTACATGCCAATGACGACCATATGTCGTGTCAAGCCATCTTTTAAGTTTTTCTGAAGCTTCCTTCTCTATAAATTTATCTTGTGGTTGAGTAAGCCTATAAGCTTCTTCTGATATTTTTATTTGATCTTGTAATGGTAGTTCTTGCATGATTACAAAGATTTCAGGTCAGTGCAGGTTCCCGTCAGTGCA]
[-] EMBL AA917167 [CGCAGATGCACTCAGTATGCTAGTCATAATTATGAAGTAGTCACATGTAGTCGTGATCGATCGATAATTCTGACGTGATCTTCATGCATGTACGATAATGATGAGATGCTGATGATTTCGAAATGAACGACAGTTGATATGGATGGATGTCCAATATGAACCTCTGAC ATAGTTACATGCCAATGACGACCATATGTCGTGTCAAGCCATCTTTTAAGTTTTTCTGAAGCTTCCTTCTCTATAAATTTATCTTG ]
[-] EMBL CD086548 [ gcaCTGACAATAGTTACATGCCAATGACGACCATATGTCGTATCAAGCCATCTTTTAAGTTTTTCTGAAGCTTCCTTCTCTATAAATTTATCTTGTGGTTGAGTAAGCCTATAAGCTTCTTCTGATATTTTTATTTGATCTTGTAATGGTAGTTCTTGCATGATTACAAAGATTTCAGGTCAGTGCAGGTTCCCGTCAGTGCA]
consensusID : consensus_10770#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 274 fasta sequence
[ATCAAGTAATGGCAAGTTCATAAATTTAATGAAAAAGATAATGGCAAAGTAATATAGTTCTGTTTTATTCGAAATCGAAATAAAATATCCTGACGTATGATTCTTTCATCGATTTGTACGGATAAATGATGAAGGAATCTGATTGATTTTAAAATGAAACGAACAGTTTGGATATTGTTGATAAGTTGTCCAATATGAACCTCTACAATAGTTACATGCCAATGACACCATATGTCGTTTCAAGCCATCTTTTAAGTTTTTCTGAAGCTTCCTT]
[-] EMBL AA952808 [ATCAAGTAATGGCAAGTTCATAAATTTAATGAAAAAGATAATGGCAAAGTAATATAGTTCTGTTTTATTCGAAATCGAAATAAAATATCCTGACGTATGATTCTTTCATCGATTTGTACGGATAAATGATGAAGGAATCTGATTGATTTTAAAATGAAACGAACAGTTTGGATATTGTTGATAAGTTGTCCAATATGAACCTCTACAATAGTTACATGCCAATGACACCATATGTCGTTTCAAGCCATCTTTTAAGTTTTTCTGAAGCTTCCTT]
consensusID : consensus_10770#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 158 fasta sequence
[TTTTCTGAANCTTCCTTCTCTATAAATTTATCTTTGTGGTTGAGTAAGCCTATAACTTCTTCTATATTTTTATTTGATCTTGTAATGGTAGTTCTTCATGATTAGCAAAGGTTTCAGGTCGGAGGCCGGGGGGAGGGATTCGGGACGATGGGCGATTG]
[-] EMBL SMAA14090 [TTTTCTGAANCTTCCTTCTCTATAAATTTATCTTTGTGGTTGAGTAAGCCTATAACTTCTTCTATATTTTTATTTGATCTTGTAATGGTAGTTCTTCATGATTAGCAAAGGTTTCAGGTCGGAGGCCGGGGGGAGGGATTCGGGACGATGGGCGATTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10770#1 ------------------------------------------------------------
consensus_10770#3 ------------------------------------------------------------
consensus_10770#0 GAGCAATACACAATATATAATTACTTTAAAAATATAAGTGACTTATTTTACACTCTAAAT 60
consensus_10770#2 ------------------------------------------------------------
consensus_10770#1 ------------------------------------------------------------
consensus_10770#3 ------------------------------------------------------------
consensus_10770#0 GTATACTGCCAAGAAAATCGAAACATCCAAAGTTAATGGGCGAAGTTCATTAAAATTTTA 120
consensus_10770#2 ------------------------------------------------------------
consensus_10770#1 --------CGCAGATGCACTCAGTATGCTAGTCATAATTATGAAGTAGTCACATGTAGTC 52
consensus_10770#3 ------------------------------------------------------------
consensus_10770#0 TAGAAAAAGATAAAGTAACAAAGTAATATAGTTCTGTTTTGATTCGAAATCGAAATAAAA 180
consensus_10770#2 ------------------------------------------------------------
consensus_10770#1 GTGATCGATCGATAATTCTGACGTGATCTTCATGCATGTACGATAATGATGAGATGCTGA 112
consensus_10770#3 ------------------------------------------------------------
consensus_10770#0 TATTCTGACGTAGTATTCTTTCATGCATTTGTACGATAAATGATGAAGGAATGCTGATTG 240
consensus_10770#2 ------------------------------------------------------------
consensus_10770#1 TGATTT---CGAAATGAACGACAGTTGATATGGATGGA---TGTCCAATATGAACCTCTG 166
consensus_10770#3 ------------------------------------------------------------
consensus_10770#0 ATTTTAAAATGAAACGAACAGTTTGGAATATGTGTATAAGTTGTCCAATATGAACCTCTG 300
consensus_10770#2 -----------------------------ATCAAGTAATGGCAAGTTCATAAATTTAATG 31
consensus_10770#1 ACA-TAGTTACATGCCAATGACGACCATATGTCGTGTCAAGCCATCTTTTAAGTTTTTCT 225
consensus_10770#3 ------------------------------------------------------TTTTCT 6
consensus_10770#0 ACAATAGTTACATGCCAATGACGACCATATGTCGTGTCAAGCCATCTTTTAAGTTTTTCT 360
consensus_10770#2 AAAAAGATAATGGCAAAGTAATATAGTTCTGTTTTATTCGAAATCGAAATAAAATATCCT 91
* * **
consensus_10770#1 GAAGCTTCCTTCTCT-ATAAATTTATCTT-----GTGGTTGAGTAAGCCTAT-AAGCTTC 278
consensus_10770#3 GAANCTTCCTTCTCT-ATAAATTTATCTTT----GTGGTTGAGTAAGCCTAT-AA-CTTC 59
consensus_10770#0 GAAGCTTCCTTCTCT-ATAAATTTATCTT-----GTGGTTGAGTAAGCCTAT-AAGCTTC 413
consensus_10770#2 GACGTATGATTCTTTCATCGATTTGTACGGATAAATGATGAAGGAATCTGATTGATTTTA 151
** * **** * ** **** * ** * ** ** * ** * **
consensus_10770#1 TTCTGATATTTTTATTTGATCTTGTAATGGTAGTTCTTGCATGATTA-------CAAAGA 331
consensus_10770#3 TTCT-ATATTTTTATTTGATCTTGTAATGGTAGTTCTT-CATGATTAG------CAAAGG 111
consensus_10770#0 TTCTGATATTTTTATTTGATCTTGTAATGGTAGTTCTTGCATGATTA-------CAAAGA 466
consensus_10770#2 AAATGAAACGAACAGTTTGGATATTGTTGATAAGTTGTCCAATATGAACCTCTACAATAG 211
* * * * ** * * ** ** * * ** ** * ***
consensus_10770#1 TTTCAGGTCAGTGC----------AGGTTCCCGTCAGTGCA------------------- 362
consensus_10770#3 TTTCAGGTCGGAGGCCGGGGGGAGGGATTCGGGACGATGGGCGATTG------------- 158
consensus_10770#0 TTTCAGGTCGTAGACCCGTTGTAGGTATTCCGTACAATGGTCTATTGATTATAGCTTGAT 526
consensus_10770#2 TTACATGCCAATGACACCATATGTCGTTTCAAGCCATCTTTTAAGTTTTTCTGAAGCTTC 271
** ** * * * *** *
consensus_10770#1 ------------------------------------------------------------
consensus_10770#3 ------------------------------------------------------------
consensus_10770#0 GTCTTTCTGGCTGAACTCCAAGAACCTCACAAAATCTCCGAAAAGTTATCTTCCCTGTTC 586
consensus_10770#2 CTT--------------------------------------------------------- 274
consensus_10770#1 ------------------------------------------------------------
consensus_10770#3 ------------------------------------------------------------
consensus_10770#0 CTTCAGGATCGAATAGTGCTTGCCATTTCGGTATCATTTCTTTATCTAAATGATTTTCTG 646
consensus_10770#2 ------------------------------------------------------------
consensus_10770#1 ------------------------------------------------------------
consensus_10770#3 ------------------------------------------------------------
consensus_10770#0 CAACATAATTACGTAATTCATTAATTGTAATAACATTAACTCCTCGTTTGTCAATAGCAC 706
consensus_10770#2 ------------------------------------------------------------
consensus_10770#1 ------------------------------------------------------------
consensus_10770#3 ------------------------------------------------------------
consensus_10770#0 CAAATGTAGTAATGAATGGTTCCATGATTTTGTATTTTCAACGTTCCTTTCCCTTCTTCT 766
consensus_10770#2 ------------------------------------------------------------
consensus_10770#1 --------
consensus_10770#3 --------
consensus_10770#0 TCTTCTTC 774
consensus_10770#2 --------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||