These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10871#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 23 consensus length = 1405 fasta sequence [CAACATCCTAGAGGCAAACATGATTGGTATTGCTTTCAGTGT-CATAGACCGGGTGAAGTTTTACGCTGTCTCGTTTGTTTCCGTGTATATCATTCTGATTGTGTTCAAGAAGCATCTGGTCCTAATAGTCCATCAAGAAAGTCTATGCGTTCACCGACTCTTCATGATGGACAGGAAGATAATTTTACTTGTCCTGTATGCGAATCTCGACCAAAATGTGAATTCTCCCGCAAACAGATAAGGAAGCTATTGGAATTTGCAACCCATCAATTGAGGAAGCAGCCATTATGGAAAACATTTATTCAAGTTGGTTATAAAGGTGAAATAACAAAAAATGAGTACCTTGTGTATAAGTACACTGATCTAGAGTTATTGCAACGCAAGATAAAAGATGGTCGGTATGCTGCCCTAGAGGAATTTTCTATGGATGTACAATTGCTTGTTCATGATGTCTGCATTCTTCATGGCCCTTATAGTAATCAGGCCGATGAGATACGATTTTTCTTTCGATCTGTTAATGCAGAATTAAATGAAATTCAACTGTGTACTGACTGTTATATCAATGCTAAGGCTCGTGTAACAGACTGGATTAGTAAACCCTGCAAACCACGTCATGAACTGATATGGGCACGCAATCGCACATCAGCAGGCGCTGGCCTGTTTAACGATACTTCAGTCTCTCAGTTCTATTGGCCTGCAAAAGTTTTGTTGGAGCGCGATGATGGATATGAGATACGCTTCTTTGGAGGCTCCCATGAGCGGATGTTCGTAAAGAAAGCCCATACTCGTGCTTTTCACCTCCCAGCTGATGAAGTTGGTGTACTTCGACGTTCAAACGCGACGGGTGCGATCTCAGGTGGAGGATTTGAGCGAGCTTGGAATGAAGTTAGTAAATTACAAGCTAACATCGATAGTGGATATTACACGCATTCTTCTGGTGAAAGCGATCTTCCGCCATCTGATGATGATTATTCAGATGAAATGTATCTTGGTCCGCGGCGTAAAACCCTCATCCAGAACCAACGTTCACATCGTGCAGATAGTCCTAGATCGTCTCTTACTTCTGGCAATACCAAGGCTAATAAGAGAAGGCGTCACACTTCTTCAAGCAGTCATCAAACAACTACTAGTGATACTCCTACTGGTGGCTCACCCGCTCGTGATGCCTCACCATGTACTCATGGTGGCAAGCACTTCAGAACTCATGGTCTTTTGCTTAATTCGCACACCGATCCTACTGACAAAAGATTGGCGAGTAATCGTCTCCCAATGCCGGTTGTTCAACCCGGTACTCCAGGCGCTGCAGCTATATCCGCCTTAGCAGAGACAAAAGCAGCTATGGCAGCTGCAGTTGGGTCTGGTCGTAGGCCCGCTGGATCATTTACTGCTGACCTCTTATCTTTGA] [+] EMBL CD187940 [CAACATCCTAGAGGCAAACATGATTGGTATTGCTTTCAGTGT CATAGACCGGGTGAAGTTTTACGCTGTCTCGATTGTTTCCGTGTATATCATTCTGATTGTGTTCAAGAAGCATCTGGTCCTAATAGTCCATCAAGAAAGTCTATGCGTTCACCGACTCTTCATGATGGACAGGAAGATAATTTTACTTGTCCTGTATGCGAATCTCGACCAAAATGTGAATTCTCCCGCAAACAGATAAGGAAGCTATTGGAATTTGCAACCCATCAATTGAGGAAGCAGCCATTATGGAAAACATTTATTCAAGTTGGTTATAAAGGTGAAATAACAAAAAATGAGTACCTTGTGTATAAGTACACTGATCTAGAGTTATTGCAACGCAAGATAAAAGATGGTCGGTATGCTGCCCTAGAGGAATTTTCTATGGATGTA ] [-] EMBL CD198834 [ aaaaatGAGGCAAACATGATTGGTATTGCTTTCAGTGT CATAGACCGGGTGAAGTTTTACGCTGTCTCGTTTGTTTCCGTGTATATCATTCTGATTGTGTTCAAGAAGCATCTGGTCCTAATAGTCCATCAAGAAAGTCTATGCGTTCACCGACTCTTCATGATGGACAGGAAGATAATTTTACTTGTCCTGTATGCGAATCTCGACCAAAATGTGAATTCTCCCGCAAACAGATAAGGAAGCTATTGGAATTTGCAACCCATCAATTGAGGAAGCAGCCATTATGGAAAACATTTATTCAAGTTGGTTATAAAGGTGAAATAACAAAAAATGAGTACCTTGTGTATAAGTACACTGAACTAGAGTTATTGCAACGCAAGA ] [-] EMBL CD199020 [ TGGTATTGC TTCAGTGTNCATAGAGCGGGTGAAGTTTTACGCTGTCTCGTTTGTTTCCGTGTATATCATTCTGATTGTGTTCAAGAAGCATCTGGTCCTAATAGTCCATCAAGAAAGTCTATGCGTTCGCCGACTCTTCATGATGGACAGGAAGATAATTTTACTTGTCCTGTATGCGAATCTCGACCAAAATGTGAATTCTCCCGCAAACAGATAAGGAAGCTATTGGAATTTGCAACCCATCAATTGAGGAAGCAGCCATTATGGCAAACATTTATTCAAGTTGGTTATAAAGGTGAAATAACAAAAAATGAGTACCTTGTGTATAAGTACACTGATCTAGAGTTATTGCAACGCAAGA ] [-] EMBL CD198898 [ GTATTGCTTTCAGTGT CATAGACCGGGTGAAGTTNTACGCTGTCTCGTTTGTTTCCGTGTATATCATTCTGATTGTGTTCAAGAAGCATCTGGTCCTAATAGTCCATCAAGAAAGTCTATGCGTTCACCGACTCTTCATGATGGACAGGAAGATAATTTTACTTGTCCTGTATGCGAATCTCGACCAAAATGTGAATTCTCCCGCAAACAGATAAGGAAGCTATTGGAATTTGCAACCCATCAATTGAGGAAGCAGCCATTATGGAAAACATTTATTCAAGTTGGTTATAAAGGTGAAATAACAAAAAATGAGTACCTTGTGTATAAGTACACTGATCTAGAGTTATTGCAACGCAAGA ] [-] EMBL CD097360 [ TATTGCTTTCAGTGT CATAGACCGGGTGAAGTTTTACGCTGTCTCGATTGTTTCCGTGTATATCATTCTGATTGTGTTCAAGAAGCATCTGGTCCTAATAGTCCATCAAGAAAGTCTGTGCGTTCACCGACTCTTCATGATGGACAGGAAGATAATTTTACTTGTCCTGTATGCGAATCTCGACCAAAATGTGAATTCTCCCGCAAACAGATAAGGAAGCTATTGGAATTTGCAACCCATCAATTGAGGAAGCAGCCATTATGGAAAACATTTATTCAAGTTGGTTATAAAGGTGAAATAACAAAAAATGAGTACCTTGTGTATAAGTACACTGATCTAGAGTTATTGCAACGCAAGATAAAAGATGGTCGGTATGCTGCCCTAGAGGAATTTTCTATGGATGTACAATTGCTTGTTCATGATGTCTG ] [-] EMBL CD097361 [ TATTGCTTTCAGTGT CATAGACCGGGTGAAGTTTTACGCTGTCTCGATTGTTTCCGTGTATATCATTCTGATTGTGTTCAAGAAGCATCTGGTCCTAATAGTCCATCAAGAAAGTCTGTGCGTTCACCGACTCTTCATGATGGACAGGAAGATAATTTTACTTGTCCTGTATGCGAATCTCGACCAAAATGTGAATTCTCCCGCAAACAGATAAGGAAGCTATTGGAATTTGCAACCCATCAATTGAGGAAGCAGCCATTATGGAAAACATTTATTCAAGTTGGTTATAAAGGTGAAATAACAAAAAATGAGTACCTTGTGTATAAGTACACTGATCTAGAGTTATTGCAACGCAAGATAAAAGATGGTCGGTATGCTGCCCTAGAGGAATTTTCTATGGATGTACAATTGCTTGTTCATGATGTCTG ] [-] EMBL CD198901 [ AGTTTTACGCTGTCTCGTTTGTTCCCGTGTATATCATTCTGATTGTGTTCAAGAAGCATCTGGTCCTAATAGTCCATCAAGAAAGTCTATGCGTTCACCGACTCTTCATGATGGACAGGAAGATAATTTTACTTGTCCTGTATGCGAATCTCGACCAAAATGTGAATTCTCCCGCAAACAGATAAGGAAGCTATTGGAATTTGCAACCCATCAATTGAGGAAGCAGCCATTATGGAAAACATTTATTCAAGTTGGTTATAAAGGTGAAATAACAAAAAATGAGTACCTTGTGTATAAGTACACTGATCTAGAGTTATTGCAACGCAAGA ] [-] EMBL CD198905 [ TTTGTTCCCGTGTATATCATTCTGATTGTGTTCAAGAAGCATCTGGTCCTAATAGTCCATCAAGAAAGTCTATGCGTTCACCGACTCTTCATGATGGACAGGAAGATAATTTTACTTGTCCTGTATGCGAATCTCGACCAAAATGTGAATTCTCCCGCAAACAGATAAGGAAGCTATTGGAATTTGCAACCCATCAATTGAGGAAGCAGCCATTATGGAAAACATTTATTCAAGTTGGTTATAAAGGTGAAATAACAAAAAATGAGTACCTTGTGTATAAGTACACTGATCTAGAGTTAATGCAACGCAAGA ] [-] EMBL CD199163 [ CATTCTGATNGTGTCAAAGAAGCATCTGGTCCTAATAGTCCATCAAGAAAGTCTATGCGTTCACCGACTCTTCATGATGGACAGGAAGATAATTTTACTTGTCCTGTATGCGAATCTCGACCAAAATGTGAATTCTCCCGCAAACAGATAAGGAAGCTATTGGGATTTGCAACCCATCAATTGAGGAAGCAGCCATTATGGAAAACATTTATTCAAGTTGGTTATAAAGGTGAAATAACAAAAAATGAGTACCTTGTGTATAAGTACACTGATCTAGAGTTATTGCAACGCAAGA ] [-] EMBL CD199141 [ ATCTGGTCATAATAGTCCATCAAGAAAGTCTATGCGTTCACCGACTCTTCATGATGGACAGGAAGATAATTTTACTTGTCCTGTATGCGAATCTCGACCAAAATGTGAATTCTCCCGCAAACAGATAAGGAAGCTATTGGAATTTGCAACCCATCAATTGAGGAAGCAGCCATTATGGAAAACATTTATTCAAGTTGGTTATAAAGGTGAAATAACAAAAAATGAGTACCTTGTGTATAAGTACNCNGATCTAGAGTTATTGCAACGCAAGA ] [-] EMBL CD199144 [ GTTCACCGACTCTTCATGATGGACAGGAAGATAA TTTACTTGTCCTGTATGCGAATCTCGACCAAAATGTGAATTCTCCCGCAAACAGATAAGGAAGCTATTGGAATTTGCAACCCATCAATTGAGGAAGCAGCCATTATGGAAAACATTTATTCAAGTTGGTTATAAAGGTGAAATAACAAAAAATGAGTACCTTGTGTATAAGTACACTGATCTAGAGTTATTGCAACGCAAGA ] [+] EMBL CD111968 [ GAAGCAGCCATTATGGAAAACATTTATTCAAGTTGGTTATAAAGGTGAAATAACAAAAAATGAGTACCTTGTGTATAAGTACACTGATCTAGAGTTATTGCAACGCAAGATAAAAGATGGTCGGTATGCTGCCCTAGAGGAATTTTCTATGGATGTACAATTGCTTGTTCATGATGTCTGCATTCTTCATGGCCCTTATAGTAATCAGGCCGATGAGATACGATTTTTCTTTCGATCTGTTAATGCAGAATTAAATGAAATTCAACTGTGTACTGACTGTTATATCAATGCTAAGGCTCGTGTAACAGACTGGATTAGTAAACCCTGCAAACCACGTCATGAACTGATATGGGCACGCAATCGCACATCAGCAGGCGCTGGCCTGTTTAACGATACTTCAGTCTCTCAGTTCTATTGGCCTGCAAAAGTTTTGTTGGAGCGCGATGATGGATATGAGATACGCTTTCTTGGAGGCTCCCATG ] [+] EMBL CD153952 [ ATATGGGCACGCAATCGCACATCAGCAGGCGCTGGCCTGTTTAACGATACTTCAGTCTCTCAGTTCTATTGGCCTGCAAAAGTTTTGTTGGAGCGCGATGATGGATATGAGATACGCTTCTTTGGAGGCTCCCATGAGCGGATGTTCATAAAGAAAGCCCATACTCGTGCTTTTCACCTCCCAGCTGATGAAGTTGGTGTACTTCGACGTTCAAACGCGACGGGTGCGATCTCAGGTGGAGGATTTGAGCGAGCTTGGAATGAAGTTAGTAAATTACAAGCTAACATCGATAGTGGATATTACACGCATTCTTCCGGTGAAAGCGATCTTCCGCCATCTGATGATGGTTATTCAGATGAAATGTATCTTGGTCCGCGGCGTAAAACCCTCATCCAGAACCAACGTTCACATCGTGCAGATAGTCCTAGATCGTCTCTTACTTCTGGCAATACCAAGGCTAATAAGAGAAGGCGTCACACTTCTTCAAGCAGTCATCAAACAACTACTAGTGATACTCCTACTGGTGGCTCACCCGCTCGTGATGCCTCACCATGTACTCATGGTGGCAAGCACTTCAGAACTCATGGTCTTT ] [+] EMBL CD154102 [ ATATGGGCACGCAATCGCACATCAGCAGGCGCTGGCCTGTTTAACGATACTTCAGTCTCTCAGTTCTATTGGCCTGCAAAAGTTTTGTTGGAGCGCGATGATGGATATGAGATACGCTTCTTTGGAGGCTCCCATGGGCGGATGTTCGTAAAGAAAGCCCATACTCGTGCTTTTCACCTCCCAGCTGATGAAGTTGGTGTACTTCGACGTTCAAACGCGACGGGTGCGATCTCAGGTGGAGGATTTGAGCGAGCTTGGAATGAAGTTAGTAAATTACAAGCTAACATCGATAGTGGATATTACACGCATTCTTCTGGTGAAAGCGATCTTCCGCCATCTGATGATGATTATTCAGATGAAATGTATCTTGGTCCGCGGCGTAAAACCCTCATCCAGAACCAACGTTCACATCGTGCAGATAGTCCTAGATCGTCTCTTACTTCTGGCAATACCAAGGCTAATAAGAGAAGGCGTCACACTTCTTCAAGCAGTCATCANACAACTACTAGTGATACTCCTACTGGTGGCTCACCCGCTCGTGATGCCTCACCATGTACTCATGGTGGCAAGCACT ] [-] EMBL CD096313 [ CACATCAGCAGGCGCTGGCCTGTTTAACGATACTTCAGTCTCTCAGTTCTATTGGCCTGCAAAAGTTNTGTTGGAGCGCGATGATGGATATGAGATACGCTTCTNTGGAGGCTCCCATGAGCGGATGTTCGTAAAGAAAGCCCATACTCGTGCTTTTCACCTCCCAGCTGATGAAGTTGGTGTACTTCGACGTTCAAACGCGACGGGTGCGATCTCAGGTGGAGGATTTGAGCGAGCTTGGAATGAAGTTAGTAAATTACAAGCTAACATCGATAGTGGATATTACACGCATTCTTCTGGTGAAAGCGATCTTCCGCCATCTGATGATGATTATTCAGATGAAATGTATCTTGGTCCGCGGCGTAAAACCCTCATCCAGAACCAACGTTCACATCGTGCAGATAGTCCTAGATCGTCTCTTACTTCTGGCAATACCAAGGCTAATAAGAGAAGGCGTCACACTTCTTCAAGCAGTCATCAAACAACTACTAGTGATACTCCTACTGGTGGCTCACCCGCTCGTGATGCCTCACCATGTACTCGTGGTGGCAAGCACTTCAGAACTCATGGTCTTTTGC ] [+] EMBL CD195826 [ CATACTCGGGCTTTT ACCTCCCAGTGGATGAAGTTGGTGTACTTCGACGTTCAAACGCGACGGGTGCAATCTCAGGTGGAGGATTTGA ] [-] EMBL CD125617 [ CGATCTCAGGTGGAGGATTTGAGCGAGC TGGAATGAAGTTAGTAAATTACAAGCTANCATCGATAGTGGATATTACACGCATTCTTCTGGTGAAAGCGATCTTCCGCCATCTGATGATGATTATTCAGATGAAATGTATCTTGGTCCGCGGCGTAAAACCCTCATCCAGAACCAACGTTCACATCGTGCAGATAGTCCTAGATCGTCTCTTACTT ] [+] EMBL CD159256 [ TAGTAAATTACAAGCTAACATCGATAGTGGATATTACACGCATTCTTCTGGTGAAAGCGATCTTCCGCCATCTGATGATGATTATTCAGATGAAATGTATCTTGGTCCGCGGCGTAAAACCCTCATCCAGAACCAACGTTCACATCGTGCAGATAGTCCTAGATCGTCTCTTACTTCTGGCAATACCAAGGCTAATAAGAGAAGGCGTCACACTTCTTCAAGCAGTCATCAAACAACTACTAGTGATACTCCTACTGGTGGCTCACCCGCTCGTGATGCCTCACCATGTA ] [+] EMBL CD159433 [ TAGTAAATTACAAGCTAACATCGATAGTGGATATTACACGCATTCTTCTGGTGAAAGCGATCTTCCGCCATCTGATGATGATTATTCAGATGAAATGTATCTTGGTCCGCGGCGTAAAACCCTCATCCAGAACCAACGTTCACATCGTGCAGATAGTCCTAGATCGTCTCTTACTTCTGGCAATACCAAGGCTAATAAGAGAAGGCGTCACACTTCTTCAAGCAGTCATCAAACAACTACTAGTGATACTCCTACTGGTGGCTCACCCGCTCGTGATGCCTCACCATGTA ] [-] EMBL CD170782 [ AGTAAATTACAAGCTAACATCGATAGTGGATATTACACGCATTCTTCTGGTGAAAGCGATCTTCCGCCATCTGATGATGATTATTCAGATGAAATGTATCTTGGTCCGCGGCGTAAAACCCTCATCCAGAACCAACGTTCACATCGTGCAGATAGTCCTAGATCGTCTCTTACTTCTGGCAATACCAAGGCTAATAAGAGAAGGCGTCACACTTCTTCAAGCAGTCATCAAACAACTACTAGTGATACTCCTACTGGTGGCTCACCCGCTCGTGATGCCTCACCATGTAC ] [+] EMBL CD071985 [ TTCAGATGAAATGTATCTTGGTCCGCGGCGTAAAACCCTCATCCAGAACCAACGTTCACATCGTGCAGATAGTCCTAGATCGTCTCTTACTTCTGGCAATACCAAGGCTAATAAGAGAAGGCGTCACACTTCTTCAAGCAGTCATCAAACAACTACTAGTGATACTCCTACTGGTGGCTCACCCGCTCGTGATGCCTCACCATGTACTCATGGTGGCAAGCACTTCAGAACTCATGGTCTTTTGCTTAATTCGCACACCGATCCTACTGACAAAAGATTGGCGAATAATCGTCTCCCAATGCCGGTTGTTCAACCCGGTACTCCAGGCGCTGCAGCTATATCCGCCTTAGCAGAGACAAAAGCAGCTATGGCAGCTGCAGTTGGGTCTGGTCGTAGGCCCGCTGGA ] [-] EMBL CD182942 [ CTTCAAGCAGTCATCAAACAACTACTAGTGATACTCCTACTGGTGGCTCACCCGCTCGTGATGCCTCACCATGTACTCATGGTGGCAAGCACTTCAGAACTCATGGTCTTTTGCTTAATTCGCACACCGATCCTACTGACAAAAGATTGGCGAGTAATCGTCTCCCAATGCCGGTTGTTCAACCCGGTACTCCAGGCGCTGCAGCTATATCCGCCTTAGCAGAGACAAAAGCAGCTATGGCAGCTGCAGTTGGGTC ] [+] EMBL BG931442 [ TCACCCGCTCGAGATGCCTCACCATGTACTCATGGTGGCAAGCACTTCAGAACTCATGGTCTTTTGCTTAATTCGCACACCGATCCTACTGACAAAAGATTGGCGAGTAATCGTCTACCAATGCCGGTTGTTCAACCCGGTACTCCAGGCGCTGCAGCTATATCCGCCTTAGCAGAGACAAAAGCAGCTATGGCAGCTGCAGTTGGGTCTGGTCGCACGCCCGCTGGATCATTTACTGCTGACCTCTTATCTTTGA] clustalw multiple alignements is not computed in this case |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||