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Schistosoma mansoni
cluster # 10879 cluster # 10879       Sequences # 24       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10879#0 length = 950 sequences # 21  
consensus_10879#1 length = 403 sequences # 1  
consensus_10879#2 length = 295 sequences # 2  

consensusID : consensus_10879#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 21
consensus length = 950
fasta sequence
                              [GTTGTTGCGAAACTCACGAAACTTCGCCATTTACAAAGGGTTCACTTGGTTCAGAATTGTCGGGAGTATCAGGAACTCCAATACTAGATGGTTGCTCCTCAGCATTTTTGGTGACCTTGACGTTCGACAAATCTTCTGCTAGTCCATTGATAATATCTCTGAAGCGTGAAAGCGAACGGCCTGGAATTGTAATTGCAG-TTCTAGATGCTGTTCGGACTTCTGAGATACGTAGGTAAGTTCCAAACCGATTGAACGAGGAGTCGAAGTACAGAGTACGGTTGTCAAACCTTAGGGACTTTGACTCCGGCAAACTAAGAGATTTACTATCATTTACTTCGGAACCATCCCACCATTTTCCCAGCATGTCATTGATGGCATTATACAAATCTAGCATGCCCTGAGACGGAATAGCAAGTTGTATTCTGTTC-AAGGTTGACAACATTGTTAAGC-GGAGAAAATGACCTCTTTTGTTGCGTTTGAGGTCAAGGAAATAACGTCTGTACGGATAGTTGACTATATGGGACTTGATGAGGCTGTTTGCGGGCTGTAAATCTGTAGTTTTATTTGCGTCTGAGTTTTGAGCACCTGAACCTTCGTCATTTGACTTGATCTCTTCAAGAACATCAATGAGATCCTTTAGTTTATCTTTTATTTCTACGGCAGCTTGCAGGGTCAGAAGAATTCTGGCTTTTCGACCGTCGGAACTGACCTCAGCGATTTTCATAAATATCCCTCTTCTATTTTTCTTGACATCGACATAAAACCG-TTTTTTCTGGACTTGCAGGGCGACACTGGCCAAATCTTCCTCTTCCTGAATATCACGCCTATGGGGTAAAGGACCAGGTAAATATGGCATCATTGGGAAATGTGGATTAGGTGGTGGCCTGTACAAAAGAGGGTTCATCATCGAAAAGTAAAAGAATTATGACAAGCACGCCTAATTTGACAAC]

[+] EMBL CD196988             [GTTGTTGCGAAACTCACGAAACTTCGCCATTTACAAAGGGTTCACTTGGTTCAGAATTGTCGGGAGTATCAGGAACTCCAATACTAGATGGTTGCTCCTCAGCATTTTTGGTGACCTTGACGTTCGACAAATCTTCTGCTAGTCCATTGATAATATCTCTGAAGCGTGAAAGCGAACGGCCTGGAATTGTAATTGCAG TTCTAGATGCTGTTCGGACTTCTGAGATACGTAGGTAAGTTCCAAACCGATTGAACGAGGAGTCGAAGTACAGAGTACGGTTGTCAAACCTTAGGGACTTTGACTCCGGCAAACTAAGAGATTTACTATCATTTACTTCGGAACCATCCCACCATTTTCCCAGCTTGTCATTGATGGCATTATACAAATCTAGCATGTCCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD161011             [                                                                                                       ATTTTTGGTGACCTTGACGTTCGACAAATCTTCTGCTAGTCCATTGATAATATCTCTGAAGCGTGAAAGCGAACGGCCTGGAATTGTAATTGCAG TTCTAGATGCTGTTCGGACTTCTGAGATACGTAGGTAAGTTCCAAACCGATTGAACGAGGAGTCGAAGTACAGAGTACGGTTGTCAAACCTTAGGGACTTTGACTCCGGCAAACTAAGAGATTTACTATCATTTACTTCGGAACCATCCCACCATTTTCCCAGCATGTCATTGATGGCATTATACAAATCTAGCATGCCCTGAGACGGAATAGCAAGTTGTATTCTGTTC AAGGTTGACAACATTGTTAAGC GGAGAAAATGACCTCTTTTGTTGCGTTTGAGGTCAAGGAAATAACGTCTGTACGGATAGTTGACTATATGGGACTTGATGAGGCTGTTTGCGGGCTGTAAATCTGTAGTTTTATTTGCGTCTGAGTTTTGAGCACCTGAACCTTCGTCATTTGACTTGATCTCTTCAAGAACATCAATGAGATCCTTTAGTTTATCT                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD123125             [                                                                                                       ATTTTTGGTGACCTTGACGTTCGACAAATCTTCTGCTAGTCCATTGATAATATCTCTGAAGCGTGAAAGCGAACGGCCTGGAATTGTAATTGCAG TTCTAGATGCTGTTCGGACTTCTGAGATACGTAGGTAAGTTCCAAACCGATTGAACGAGGAGTCGAAGTACAGAGTACGGTTGTCAAACCTTAGGGACTTTGACTCCGGCAAACTAAGAGATTTACTATCATTTACTTCGGAACCATCCCACCATTTTCCCAGCATGTCATTGATGGCATTATACAAATCTAGCATGCCCTGAGACGGAATAGCAAGTTGTATTCTGTTC AAGGTTGACAACATTGTTAAGC GGAGAAAATGACCTCTTTTGTTGCGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD123126             [                                                                                                       ATTTTTGGTGACCTTGACGTTCGACAAATCTTCTGCTAGTCCATTGATAATATCTCTGAAGCGTGAAAGCGAACGGCCTGGAATTGTAATTGCAG TTCTAGATGCTGTTCGGACTTCTGAGATACGTAGGTAAGTTCCAAACCGATTGAACGAGGAGTCGAAGTACAGAGTACGGTTGTCAAACCTTAGGGACTTTGACTCCGGCAAACTAAGAGATTTACTATCATTTACTTCGGAACCATCCCACCATTTTCCCAGCATGTCATTGATGGCATTATACAAATCTAGCATGCCCTGAGACGGAATAGCAAGTTGTATTCTGTTC AAGGTTGACAACATTGTTAAGC GGAGAAAATGACCTCTTTTGTTGCGTTTGAGGTCAAGGAAATAACGTCTGTACGGATAGTTGACTATATGGGACTTGATGAGGCTGTTTGCGGGCTGTAAATCTGTAATTATA                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD163492             [                                                                                                           TTGGTGACCTTGACGCTCGACAAATCTTCTGCTAGTCCATTGATAATATCTCTGAAGCGTGTAAGCGAACGGCCTGGAATTGTAATTGCAG TTCTAGATGCTGTTCGGACTTCTGAGATACGTAGGTAAGTTCCAAACCGATTGAACGAGGAGTCGAAGTACAGAGTACGGCTGTCAAACCTTAGGGACTTTGACTCCGGCAAACTAAGAGATTTACTATCATTTACTTCGGAACCATCCCACCATTTTCCCAGCATGTCATTGATGGCATTATACAAATCTAGCATGCCCTGAGACGGAATAGCAAGTTGTATTCTGTTC AAGGTTGACAACATTGTTAAGC GGAGAAAATGACCTCTTTTGTTGCGTTTGAGGTCAAGGAAATAACGTCTGTACGGATAGTTGACTATATGGGACTTGATGAGGCTGTTTGCGGGC                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD163228             [                                                                                                              GTGACCTTGACGTTCGACAAATCTTCTGCTAGTCCATTGATAATATCTCTGAAGCGTGAAAGCGAACGGCCTGGAATTGTAATTGCAG TTCTAGATGCTGTTCGGACTTCTGAGATACGTAGGTAAGTTCCAAACCGATTGAACGAGGAGTCGAAGTACAGAGTACGGTTGTCAAACCTTAGGGACTTTGACTCCGGCAAACTAAGAGATTTACTATCATTTACTTCGGAACCATCCCACCATTTTCCCAGCATGTCATTGATGGCATTATACAAATCTAGCATGCCCTGAGACGGAATAGCAAGTTGTATTCTGTTC AAGGTTGACAACATTGTTAAGC GGAGAAAATGACCTCTTTTGTTGCGTTTGAGGTCAAGGAAATAACGTCTGTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD163149             [                                                                                                              GTGACCTTGACGTTCGACAAATCTTCTGCTAGTCCATTGATAATATCTCTGAAGCGTGAAAGCGAACGGCCTGGAATTGTAATTGCAG TTCTAGATGCTGTTCGGACTTCTGAGATACGTAGGTAAGTTCCAAACCGATTGAACGAGGAGTCGAAGTACAGAGTACGGTTGTCAAACCTTAGGGACTTTGACTCCGGCAAACTAAGAGATTTACTATCATTTACTTCGGAACCATCCCACCATTTTCCCAGCATGTCATTGATGGCATTATACGAATCTAGCATGCCCTGAGACGGAATAGCAAGTTGTATTCTGTTCTAAGGTTGACAACATTGTTAAGCTGGAGAAAATGACCTCTTTTGTTGCGTTTGAGGTCAAGGAAATAACGTCTGTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD160587             [                                                                                                                                                      TAATATCTCTGAAGCGTGAAAGCGAACGGCCTGGAATTGTAATTGCAG TTCTAGATGCTGTTCGGACTTCTGAGATACGTAGGTAAGTTCCAAACCGATTGAACGAGGAGTCGAAGTACAGAGTACGGTTGTCAAACCTTAGGGACTTTGACTCCGGCAAACTAAGAGATTTACTATCATTTACTTCGGAACCATCCCACCATTTTCCCAGCATGTCATTGATGGCATTATACAAATCTAGCATGCCCTGAGACGGAATAGCAAGTTGTATTCTGTTC AAGGTTGACAACATTGTTAAGC GGAGAAAATGACCTCTTTTGTTGCGTTTGAGGTCAAGGAAATAACGTCTGTACGCATAGTTCACTATATGGCACTTGATGAGCCTGTTAGCGGG                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD189876             [                                                                                                                                                                                                   CAGTTTCTAGATGCTGTTCGGACTTCTGAGATACGTAGGTAAGTTCCAAACCGATTGAACGAGGAGTCGAAGTACAGAGTACGGTTGTCAAACCTTAGGGACTTTGACTCCGGCAAACTAAGAGATTTACTATCATTTACTTCGGAACCATCCCACCATTTTCCCAGCATGTCATTGATGGCATTATACAAATCTAGCATGCCCTGAGACGGAATAGCAAGTTGTATTCTGTTC AAGGTTGACAACATTGTTAAGC GGAGAAAATGACCTCTTTTGTTGCGTTTGAGGTCAAGGAAATAACGTCTGTACGGATAGTTGACTATATGGGACTTGATGAGGCTGTTTGCGGGCTGTAAATCTGTAGTTTTATTTGCGTCTGAGTTTTGAGCACCTGAACCTTCGTCATTTGACTTGATCTCTTCAAGAACATCAATGAGATCCTTTAGTTTATCTTTTATTTCTACG                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD179443             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            gATAACGTCTGTACGGATAGTTGACTATATGGGACTTGATGAGGCTGTTTGCGGGCTGTAAATCTGTAGTTTTATTTGCGTCTGAGTTTTGAGCACCTGAACCTTCGTCATTTGACTTGATCTCTTCAAGAACATCAATGAGATCCTTTAGTTTATCTTTTATTTCTACGGCAGCTTGCAGGGTCAGAAGAATTCTGGCTTTTCGACCGTCGGAACTGACCTCAGCGATTTTCATAAATATCCCTCTTCTATTTTTCTTGACATCGACATAAAACCG TTTTTTCTGGACTTGCAGGGCGACACTGGCCAAATCTTCCTCTTCCTGAATATCACGCCTATGGGGTAAAGGACCAGGTAAATATGGCATCATTGGGAAATGTGGATTAGGTGGTGGCCTGTACAAAAGAGGGTTCATCATCGAAAAGTAAAAGAATTATGACAAGCACGCCTAATTTGACAAC]
[-] EMBL CD170194             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          aGGACAAGA GCGGCTGTTTGCGGGCTGTAAATCTGTAGTTTTATTTGCGTCTGAGTTTTGAGCACCTGAACCTTCGTCATTTGACTTGATCTCTTCAAGAACATCAATGAGATCCTTTAGTTTATCTTTTATTTCTACGGCAGCTTGCAGGGTCAGAAGAATTCTGGCTTTTCGACCGTCGGAA     CTCAGCGATTTTCATAAATATCCCTCTTCTATTTTTCTTGACATCGACATAAAACCGTTTTTTTCTGGACTTGCAGGGCGACACTGGCCAAATCTTCCTCTTCCTGAATATCACGCCTATGGGGTAAAGGACCAGGTAAATATGGCATCATTGGGAAATGTGGATTAGGTGGTGGCCTGTACAAAAGAGGGTTCA                                               ]
[-] EMBL CD159277             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TTGCGGGCTGTAAATCTGTAGTTTTATTTGCGTCTGAGTTTTGAGCACCTGAACCTTCGTCATTTGACTTGATCTCTTCAAGAACATCAATGAGATCCTTTAGTTTATCTTTTATTTCTACGGCAGCTTGCAGGGTCAGAAGAATTCTGGCTTTTCGACCGTCGGAACTGACCTCAGCGATTTTCATAAATATCCCTCTTCTATTTTTCTTGACATCGACATAAAACCG TTTTTTCTGGACTTGCAGGGCGACACTGGCCAAATCTTCCTCTTCCTGAATATCACGCCTATGGGGTAAAGGACCAGGTAAATATGGCATCATTGGGAAATGTGGATTAGGTGGTGGCCTGTACAAAAGAGGGTTCATCATCGAAAAGTAAAA                               ]
[+] EMBL CD161346             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AGTTTTATTTGCGTCTGAGTTTTGAGCACCTGAACCTTCGTCATTTGACTTGATCTCTTCAAGAACATCAATGAGATCCTTTAGTTTATCTTTTATTTCTACGGCAGCTTGCAGGGTCAGAAGAATTCTGGCTTTTCGACCGTCGGAACTGACCTCAGCGATTTTCATAGATATCCCTCTTCTATTTTTCTTGACATCGACATAAAACCG TTTTTTCTGGACTTGCAGGGCGACACTGGCCAAATCTTCCTCTTCCTGAATATCACGCCTATGGGGTAAAGGACCAGGTAAATATGGCATCATTGGGAAATGTGGATTAGGTGGTGGCCTGTACAAAAGAGGGTTCATCATCGAAAAGTAAAAGAATTATGACAAGCACGCCTAATTTGACAA ]
[+] EMBL CD161223             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AGTTTTATTTGCGTCTGAGTTTTGAGCACCTGAACCTTCGTCATTTGACTTGATCTCTTCAAGAACATCAATGAGATCCTTTAGTTTATCTTTTATTTCTACGGCAGCTTGCAGGGTCAGAAGAATTCTGGCTTTTCGACCGTCGGAACTGACCTCAGCGATTTTCATAAATATCCCTCTTCTATTTTTCTTGACATCGGCATAAAACCG TTTTTTCTGGACTTGCAGGGCGACACTGGCCAAATCTTCCTCTTCCTGAATATCACGCCTATGGGGTAAAGGACCAGGTAAATATGGCATCATTGGGAAATGTGGATTAGGTGGTGGCCTGTACAAAAGAGGGTTCATCATCGAAAAGTAAAAGAATTATGACAAGCACGCCTAATTTGACAA ]
[-] EMBL CD158725             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AGTTTTATTTGCGTCTGAGTTTTGAGCACCTGAACCTTCGTCATTTGACTTGATCTCTTCAAGAACATCAATGAGATCCTTTAGTTTATCTTTTATTTCTACGGCAGCTTGCAGGGTCAGAAGAATTCTGGCTTTTCGACCGTCGGAACTGACCTCAGCGATTTTCATAAATATCCCTCTTCTATTTTTCTTGACATCGACATAAAACCG TTTTTTCTGGACTTGCAGGGCGACACTGGCCAAATCTTC                                                                                                                                                 ]
[-] EMBL CD158871             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AGTTTTATTTGCGTCTGAGTTTTGAGCACCTGAACCTTCGTCATTTGACTTGATCTCTTCAAGAACATCAATGAGATCCTTTAGTTTATCTTTTATTTCTACGGCAGCTTGCAGGGTCAGAAGAATTCTGGCTTTTCGACCGTCGGAACTGACCTCAGCGATTTTCATAAATATCCCTCTTCTATTTTTCTTGACATCGACATAAAACCG TTTTTTCTGGACTTGCAGGGCGACACTGGCCAAATCTT                                                                                                                                                  ]
[-] EMBL CD161212             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GTTTTATTTGCGTCTGAGTTTTGAGCACCTGAACCTTCGTCATTTGACTTGATCTCTGCAAGAACATCAATGAGATCCTTTAGTTTATCTTTTATTTCTACGGCAGCTTGCAGGGTCAGAAGAATTCTGGCTTTTCGACCGTCGGAACTGACCTCAGCGATTTTCATAAATATCCCTCTTCTATTTTTCTTGACATCGACATAAAACCG TTTTTTCTGGACTTGCAGGGCGACACTGGCCAAATCTTCCTCTTCCTGAATATCACGCCTATGGGGTAAAGGACCAGGTAAATATGGCATCATTGGGAAATGTGGATTAGGTGGTGGCCTGTACAAAAGAGGGTTCATCATCGAAAAGTAAAAGAATTATGACAAGCACGCCTAATTTGACAAC]
[+] EMBL CD123012             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TCAGAAGAATTCTGGCTTTTCGACCGTCGGAACTGATCTCAGCGATTTTCATAAATATCCCTCTTCTATTTTTCTTGACATCGACATAAAACCG TTTTTTCTGGACTTGCAGGGCGACACTGGCCAAATCTTCCTCTTCCTGAATATCACGCCTATGGGGTAAAGGACCAGGTAAATATGGCATCATTGGGAAATGTGGATTAGGTGGTGGCCTGTACAAAAGAGGGTTCATCATCGAAAAGTAAAAGAATTATGACAAGCACGCCTAATTTGACAA ]
[-] EMBL CD160949             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CAGAAGAATTCTGGCTTTTCGACCGTCGGAACTGACCTCAGCGATTTTCATAAATATCCCTCTTCTATTTTTCTTGACATCGACATAAAACCG TTTTTTCTGGACTTGCAGGGCGACACTGGCCAAATCTTCCTCTTCCTGAATATCACGCCTATGGGGTAAAGGACCAGGTAAATATGACATCATTGGGAAATGTGGATTAGGTGGTGGCCTGTACAAAAGAGGGTTCATCATCGAAAAGTAAAAGAATTATGACAAGCACGCCTAATTTGACAAC]
[-] EMBL CD159156             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGAATTCTGGCTTTTCGACCGTCGGAACTGACCTCAGCGATTTTCATAAATATCCCTCTTCTATTTTTCTTGACATCGACATAAAACCG TTTTTTCTGGACTTGCAGGGCGACACTGGCCAAATCTTCCTCTTCCTGAATATCACGCCTATGGGGTAAAGGACCAGGTAAATATGGCATCATTGGGAAATGTGGATTAGGTGGTGGCCTGTACAAAAGAGGGTTCATCATCGAAAAGTAAAA                               ]
[-] EMBL CD098272             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TCAGCGATTTTCATAAATATCCCTCTTCTATTTTTCTTGACATCGACATAAAACCG TTTTTTCTGGACTTGCAGGGCGACACTGGCCAAATCTTCCTCTTCCTGAATATCACGCCTATGGGGTAAAGGACCAGGTAAATATGGCATCATTGGGAAATGTGGATTAGGTGGTGGCCTGTACAAAAGAGGGTTCATCATCGAAAAGTAAAAGAATTATGACAAGCACG              ]


>consensus_10879#0 GTTGTTGCGAAACTCACGAAACTTCGCCATTTACAAAGGGTTCACTTGGTTCAGAATTGT CGGGAGTATCAGGAACTCCAATACTAGATGGTTGCTCCTCAGCATTTTTGGTGACCTTGA CGTTCGACAAATCTTCTGCTAGTCCATTGATAATATCTCTGAAGCGTGAAAGCGAACGGC CTGGAATTGTAATTGCAGTTCTAGATGCTGTTCGGACTTCTGAGATACGTAGGTAAGTTC CAAACCGATTGAACGAGGAGTCGAAGTACAGAGTACGGTTGTCAAACCTTAGGGACTTTG ACTCCGGCAAACTAAGAGATTTACTATCATTTACTTCGGAACCATCCCACCATTTTCCCA GCATGTCATTGATGGCATTATACAAATCTAGCATGCCCTGAGACGGAATAGCAAGTTGTA TTCTGTTCAAGGTTGACAACATTGTTAAGCGGAGAAAATGACCTCTTTTGTTGCGTTTGA GGTCAAGGAAATAACGTCTGTACGGATAGTTGACTATATGGGACTTGATGAGGCTGTTTG CGGGCTGTAAATCTGTAGTTTTATTTGCGTCTGAGTTTTGAGCACCTGAACCTTCGTCAT TTGACTTGATCTCTTCAAGAACATCAATGAGATCCTTTAGTTTATCTTTTATTTCTACGG CAGCTTGCAGGGTCAGAAGAATTCTGGCTTTTCGACCGTCGGAACTGACCTCAGCGATTT TCATAAATATCCCTCTTCTATTTTTCTTGACATCGACATAAAACCGTTTTTTCTGGACTT GCAGGGCGACACTGGCCAAATCTTCCTCTTCCTGAATATCACGCCTATGGGGTAAAGGAC CAGGTAAATATGGCATCATTGGGAAATGTGGATTAGGTGGTGGCCTGTACAAAAGAGGGT TCATCATCGAAAAGTAAAAGAATTATGACAAGCACGCCTAATTTGACAAC



consensusID : consensus_10879#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 403
fasta sequence
                              [TGACTCCGCCGAAATTTACTATCATTTACTTCGGAACCATCCCACCATTTTCCCAGCATGTCATTGATGGCATTATACAAATCTAGCATGCCCTGAGACGGAATAGCAAGTTGTATTCTGTTCAAGGTTGACAACATTGTTAAGCGGAGAAAATGACCTCTTTTGTTGCGTTTGAGGTCAAGGAAATAACGTCTGTACGGATAGTTGACTATATGGGACTTGATGAGGCTGTTTGCGGGCTGTAAATCTGTAGTTTTATTTGCGTCTGAGTTTTGAGCACCTGAACCTTCGTCATTTGACTTGATCTCTTCAAGAACATCAATGAGATCCTTTAGTTTATCTTTTATTTCTACGGCAGCTTGCAGGGACAGAAGAATTCTGGCTTTTCGACCGTCGGAACTGA]

[-] EMBL CD163143             [TGACTCCGCCGAAATTTACTATCATTTACTTCGGAACCATCCCACCATTTTCCCAGCATGTCATTGATGGCATTATACAAATCTAGCATGCCCTGAGACGGAATAGCAAGTTGTATTCTGTTCAAGGTTGACAACATTGTTAAGCGGAGAAAATGACCTCTTTTGTTGCGTTTGAGGTCAAGGAAATAACGTCTGTACGGATAGTTGACTATATGGGACTTGATGAGGCTGTTTGCGGGCTGTAAATCTGTAGTTTTATTTGCGTCTGAGTTTTGAGCACCTGAACCTTCGTCATTTGACTTGATCTCTTCAAGAACATCAATGAGATCCTTTAGTTTATCTTTTATTTCTACGGCAGCTTGCAGGGACAGAAGAATTCTGGCTTTTCGACCGTCGGAACTGA]


>consensus_10879#1 TGACTCCGCCGAAATTTACTATCATTTACTTCGGAACCATCCCACCATTTTCCCAGCATG TCATTGATGGCATTATACAAATCTAGCATGCCCTGAGACGGAATAGCAAGTTGTATTCTG TTCAAGGTTGACAACATTGTTAAGCGGAGAAAATGACCTCTTTTGTTGCGTTTGAGGTCA AGGAAATAACGTCTGTACGGATAGTTGACTATATGGGACTTGATGAGGCTGTTTGCGGGC TGTAAATCTGTAGTTTTATTTGCGTCTGAGTTTTGAGCACCTGAACCTTCGTCATTTGAC TTGATCTCTTCAAGAACATCAATGAGATCCTTTAGTTTATCTTTTATTTCTACGGCAGCT TGCAGGGACAGAAGAATTCTGGCTTTTCGACCGTCGGAACTGA



consensusID : consensus_10879#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 295
fasta sequence
                              [AAGAATTCTGGCTTTTCGACCGTCGGAACTGACCTACTTTCTCATCACGTTTAAAGTATACCAAACCTCAGCGATTTTCATAAATATCCCTCTTCTATTTTTCTTGACATCGACATAAAACCGTTTTTTCTGGACTTGCAGGGCGACACTGGCCAAATCTTCCTCTTCGCCTATGGGGTAAAGGACCAGGTAAATATGGCATCATTGGGAAATGTGGATTAGGTGGTGGCCTGTACAAAAGAGGGTTCATCATCGAAAAGTAAAAGAATTATGACAAGCACGCCTAATTTGACAA]

[+] EMBL CD122877             [AAGAATTCTGGCTTTTCGACCGTCGGAACTGACCTACTTTCTCATCACGTTTAAAGTATACCAAACCTCAGCGATTTTCATAAATATCCCTCTTCTATTTTTCTTGACATCGACATAAAACCGTTTTTTCTGGACTTGCAGGGCGACACTGGCCAAATCTTCCTCTTCGCCTATGGGGTAAAGGACCAGGTAAATATGGCATCATTGGGAAATGTGGATTAGGTGGTGGCCTGTACAAAAGAGGGTTCATCATCGAAAAGTAAAAGAATTATGACAAGCACGCCTAATTTGACAA]
[+] EMBL CD122896             [AAGAATTCTGGCTTTTCGACCGTCGGAACTGACCTACTTTCTCATCACGTTTAAAGTATACCAAACCTCAGCGATTTTCATAAATATCCCTCTTCTATTTTTCTTGACATCGACATAAAACCGTTTTTTCTGGACTTGCAGGGCGACACTGGCCAAATCTTTCTCTTCGCCTATGGGGTAAAGGACCAGGTAAATATGGCATCATTGGGAAATGTGGATTAGGTGGTGGCCTGTACAAAAGAGGGTTCATCATCGAAAAGTAAAAGAATTATGACAAGCACGCCTAATTTGACAA]


>consensus_10879#2 AAGAATTCTGGCTTTTCGACCGTCGGAACTGACCTACTTTCTCATCACGTTTAAAGTATA CCAAACCTCAGCGATTTTCATAAATATCCCTCTTCTATTTTTCTTGACATCGACATAAAA CCGTTTTTTCTGGACTTGCAGGGCGACACTGGCCAAATCTTCCTCTTCGCCTATGGGGTA AAGGACCAGGTAAATATGGCATCATTGGGAAATGTGGATTAGGTGGTGGCCTGTACAAAA GAGGGTTCATCATCGAAAAGTAAAAGAATTATGACAAGCACGCCTAATTTGACAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10879#0      GTTGTTGCGAAACTCACGAAACTTCGCCATTTACAAAGGGTTCACTTGGTTCAGAATTGT 60
consensus_10879#1      ------------------------------------------------------------
consensus_10879#2      ------------------------------------------------------------
                                                                                   

consensus_10879#0      CGGGAGTATCAGGAACTCCAATACTAGATGGTTGCTCCTCAGCATTTTTGGTGACCTTGA 120
consensus_10879#1      ------------------------------------------------------------
consensus_10879#2      ------------------------------------------------------------
                                                                                   

consensus_10879#0      CGTTCGACAAATCTTCTGCTAGTCCATTGATAATATCTCTGAAGCGTGAAAGCGAACGGC 180
consensus_10879#1      ------------------------------------------------------------
consensus_10879#2      ------------------------------------------------------------
                                                                                   

consensus_10879#0      CTGGAATTGTAATTGCAGTTCTAGATGCTGTTCGGACTTCTGAGATACGTAGGTAAGTTC 240
consensus_10879#1      ------------------------------------------------------------
consensus_10879#2      ------------------------------------------------------------
                                                                                   

consensus_10879#0      CAAACCGATTGAACGAGGAGTCGAAGTACAGAGTACGGTTGTCAAACCTTAGGGACTTTG 300
consensus_10879#1      ----------------------------------------------------------TG 2
consensus_10879#2      ------------------------------------------------------------
                                                                                   

consensus_10879#0      ACTCCGGCAAACTAAGAGATTTACTATCATTTACTTCGGAACCATCCCACCATTTTCCCA 360
consensus_10879#1      ACTCCGCCGAA-------ATTTACTATCATTTACTTCGGAACCATCCCACCATTTTCCCA 55
consensus_10879#2      ------------------------------------------------------------
                                                                                   

consensus_10879#0      GCATGTCATTGATGGCATTATACAAATCTAGCATGCCCTGAGACGGAATAGCAAGTTGTA 420
consensus_10879#1      GCATGTCATTGATGGCATTATACAAATCTAGCATGCCCTGAGACGGAATAGCAAGTTGTA 115
consensus_10879#2      ---------------AAGAATTCTGGCTTTTCGACCGTCGGAACTGACCTACTT-TCTCA 44
                                       *  ** *     *  *   *   *  ** **    *   *   *

consensus_10879#0      TTCTGTTCAAGGTTGAC--AACATTGTTAAGCGGAGAAAATGACC-TCTTTTGTTGCGTT 477
consensus_10879#1      TTCTGTTCAAGGTTGAC--AACATTGTTAAGCGGAGAAAATGACC-TCTTTTGTTGCGTT 172
consensus_10879#2      TCACGTTTAAAGTATACCAAACCTCAGCGATTTTCATAAATATCCCTCTTCTATTTTTCT 104
                       *   *** ** **  **  *** *     *       ****  ** **** * **    *

consensus_10879#0      TGAGGTCAAGGAAATAACGTCTGTACGGATAGTTGACTATATGGGACTTGATGAGGCTGT 537
consensus_10879#1      TGAGGTCAAGGAAATAACGTCTGTACGGATAGTTGACTATATGGGACTTGATGAGGCTGT 232
consensus_10879#2      TGACATCGACATAAAACCGTTTTTTCTG--GACTTGCAGGGCGACACTGGCCAAATCTTC 162
                       ***  ** *   ** * *** * * * *     *  *     *  *** *   *  **  

consensus_10879#0      TTGCGGGCTGTAAATCTGTAGTTTTATTTGCGTCTGAGTTTTGAGCACCTGAACCTTCGT 597
consensus_10879#1      TTGCGGGCTGTAAATCTGTAGTTTTATTTGCGTCTGAGTTTTGAGCACCTGAACCTTCGT 292
consensus_10879#2      CTCTTCGCCTATGGGGTAAAGGACCAGGTAAATATGGCAT-----CATTGGGAAATGTGG 217
                        *    **        *  **    *  *   * **   *     **   * *  *  * 

consensus_10879#0      CATTTGACTTGATCTCTTCAAGAACATCAATGAGATCCTTTAGTTTATCTTTTATTTCTA 657
consensus_10879#1      CATTTGACTTGATCTCTTCAAGAACATCAATGAGATCCTTTAGTTTATCTTTTATTTCTA 352
consensus_10879#2      ATTAGGTGGTGGCCTGTACAAAAGAGGGTTCATCATCGAAAAGTAAAAGAATTATGACAA 277
                         *  *   **  ** * *** *           ***    ***  *    ****  * *

consensus_10879#0      CGGCAGCTTGCAGGGTCAGAAGAATTCTGGCTTTTCGACCGTCGGAACTGACCTCAGCGA 717
consensus_10879#1      CGGCAGCTTGCAGGGACAGAAGAATTCTGGCTTTTCGACCGTCGGAACTGA--------- 403
consensus_10879#2      GCAC-GCCTAATTTGACAA----------------------------------------- 295
                          * ** *     * **                                          

consensus_10879#0      TTTTCATAAATATCCCTCTTCTATTTTTCTTGACATCGACATAAAACCGTTTTTTCTGGA 777
consensus_10879#1      ------------------------------------------------------------
consensus_10879#2      ------------------------------------------------------------
                                                                                   

consensus_10879#0      CTTGCAGGGCGACACTGGCCAAATCTTCCTCTTCCTGAATATCACGCCTATGGGGTAAAG 837
consensus_10879#1      ------------------------------------------------------------
consensus_10879#2      ------------------------------------------------------------
                                                                                   

consensus_10879#0      GACCAGGTAAATATGGCATCATTGGGAAATGTGGATTAGGTGGTGGCCTGTACAAAAGAG 897
consensus_10879#1      ------------------------------------------------------------
consensus_10879#2      ------------------------------------------------------------
                                                                                   

consensus_10879#0      GGTTCATCATCGAAAAGTAAAAGAATTATGACAAGCACGCCTAATTTGACAAC 950
consensus_10879#1      -----------------------------------------------------
consensus_10879#2      -----------------------------------------------------
                                                                            




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)