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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10885#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1316 fasta sequence
[CATTTATTTTTAAGTATCAAATTGTACAGACCCAAATGGGTTTGGCACAAAATTAAATACTTAAGATGTGTAAACAAGGTGTTTTGTTACACTGAATTACAAGGTTGTATGAGAGAAAAAATAGAAGATGAAGAAGGAGAATTGCAAGATGATAGAATTAAAACATGTTAAGTTTCCGAAATGCACAGATGGGCGAGTAGGAATAACTATAGTAATAATAATAATAATAATATACTAAAATAACAATAACAATAGTGGTAAAGTAATAATAAGAATGGCACTAATAACAATAATAATAATAATAAAATGATAATAATAATGGCATTAGTAACAATCAGGATATTGTGGACAGGCAAATGAGGTAACCAGTGTATGGGTACCCACCAAATTAGAGAGAAGGGGTCTCGTGGGTGAGGAGTCAGCACGGGACGTTGAAAAGGTGGGAGAACACGTTACAGGCTTAGATGAGCAGGGTAATTAATGAGACAGCAATAGACAAGAAGGCAAAGACGAAAGAAAGAAGAGAGAAGAAAAGAAAAGAAAAAAAAGGAAAAGGAGAG-AAAAAAAGAAGAAAAAAAAAAGGGTGGAACAGTAGAGAATAAGGAGAAAGGAACAAAAACAGAATGTGTCAGTTTCCGCGCTGGTAGAGACCGGCTTCGTTATTTTATTGTTTTTAACACAACTGACATGCCAGAGGTTCCGTATTTCGGTGGCCACTAGCAGAAGAGGACGAAATTCATAGTGAATCTCGTGTCACGGACCGTTCATAGGCCCTCTCCGTGACTAAGTATACAGGTGTTAAGGATATCATAAAAGAAGTAAATGGGGGAAGGGTTACAATGACAATAAAATAAAATGAGGAAAGTAAAACCAATAAGACGATGACAGAGAAACAGGAAAATAGAGAATGGAGTGTGATACAGACAAACCTAGATAGTAGAGTGCTTC-T-CCAAAATTAAAACGATTTGGGCATATTTAATAG-CACAAGAGGACGAAATTGGTGGTGAGCTTCGCGTCACGGAACCGTTCATAGGTCCTCTTCATGATTAATTATCTAGATCCGAATGTATCAGACACAGAGTAGATGAAG-AAATATTTATAATGTCAAAAGAATACGATGATGACAATGGGACCAATAAAGACGAAGATAACAGTAAACAGCAAAATAGAGAATGGAGTGTGATACAGACAAACCTAGATAGTAGAGTGCTTCTCCAAAATTGAAACGATTT-GGCATAATTAATAGTACAAGAGGACGAAATTGGTGGTGAGCTTCGCGTCACGGAACCGCCTCGGACCGAATTCTTGGCCTGGAN]
[+] EMBL CD076288 [CATTTATTTTTAAGTATCAAATTGTACAGACCCAAATGGGTTTGGCACAAAATTAAATACTTAAGATGTGTAAACAAGGTGTTTTGTTACACTGAATTACAAGGTTGTATGAGAGAAAAAATAGAAGATGAAGAAGGAGAATTGCAAGATGATAGAATTAAAACATGTTAAGTTTCCGAAATGCACAGATGGGCGAGTAGGAATAACTATAGTAATAATAATAATAATAATATACTAAAATAACAATAACAATAGTGGTAAAGTAATAATAAGAATGGCACTAATAACAATAATAATAATAATAAAATGATAATAATAATGGCATTAGTAACAATCAGGATATTGTGGACAGGCAAATGAGGTAACCAGTGTATGGGTACCCACCAAATTAGAGAGAAGGGGTCTCGTGGGTGAGGAGTCAGCACGGGACGTTGAAAAGGTGGGAGAACACGTTACAGGCTTAGATGAGCAGGGTAATTAATGAGACAGCAATAGACAAGAAGGCAAAGACGAAAGAAAGAAGAGAGAAGAAAAGAAAAGAAAAAAAAGGAAAAGGAGAG ]
[-] EMBL CD082698 [ CCACCAAATTAGAGAGAAGGGGTCTCGTGGGTGAGGAGTCAGCACGGGACGTTGAAAAGGTGGGAGAACACGTTACAGGCTTAGATGAGCAGGGTAATTAATGAGACAGCAATAGACAAGAAGGCAAAGACGAAAGAAAGA ]
[+] EMBL CD191757 [ GATGAGCAGGGTAATTAATGAGACAGCAATAGACAAGAAGGCAAAGACGAAAGAAAGAAGAGAGAAGAAAAGAAAAGAAAAAAAAGGAAAAGGAGAGAAAAAAAAGAAGAAAAAAAAAAGGGTGGAACAGTAGAGAATAAGGAGAAAGGAACAAAAACAGAATGTGTCAGTTTCCGCGCTGGTAGAGACCGGCTTCGTTATTTTATTGTTTTTAACACAACTGACATGCCAGAGGTTCCGTATTTCGGTGGCCACTAGCAGAAGAGGACGAAATTCATAGTGAATCTCGTGTCACGGACCGTTCATAGGCCCTCTCCGTGACTAAGTATACAGGTGTTAAGGATATCATAAAAGAAGTAAATGGGGGAAGGGTTACAATGACAATAAAATAAAATGAGGAAAGTAAAACCAATAAGACGATGACAGAGAAACAGGANAATAGAGAA ]
[+] EMBL CD200872 [ AGACAGCAATAGACAAGAAGGCAAAGACGAAAGAAAGAAGAGAGAAGAAAAGAAAAGAAAAAAAAGGAAAAGGAGAG AAAAAAAGAAGAAAAAAAAGAGGGTGGAACAGTGGAGAATAAGGAGAAAGGAACAAAAACAGAATGTGTCAGTTTCCGCGCTGGTAGAGACCGGCTTCGTTATTTTATTGTTTTTAACACAACTGACATGCCAGAGGTTCCGTATTTCGGTGGCCACTAGCAGAAGAGGACGAAATTCATAGTGAATCTCGTGTCACGGACCGTTCATAGGCCCTCTCCGTGACTAAGTATACAGGTGTTAAGGATATCATAAAAGAAGTAAATGGGGGAAGGGTTACAATGACAATAAAAT AAATGAGGAAAGTATAACCAATAGGACGATGACAGAGAAACAGGAAAATAAAGAATGGAGTGTGATCCAGACAAACCTATATAGTATAGTGCTTC T CCAAAATT AAACGATTTGGGCATA ]
[+] EMBL CD091424 [ AGAATGTGTCAGTTTCCGCGCTGGTAGAGACCGGCTTCGTTATTTTATTGTTTTTAACACAACTGACATGCCAGAGGTTCCGTATTTCGGTGGCCACTAGCAGAAGAGGACGAAATTCATAGTGAATCTCGTGTCACGGACCGTTCATAGGCCCTCTCCGTGACTAAGTATACAGGTGTTAAGGATATCATAAAAGAAGTAAATGGGGGAAGGGTTACAATGACAATAAAATAAAATGAGGAAAGTAAAACCAATAGGACGATGACAGAGAAACAGGAAAATAGAGAATGGAGTGTGATACAGACAAACCTAGATAGTAGAGTGCTTC T CCAAAATTAAAACGATTTGGGCATATTTAATAG CACAAGAGGACGAAATTGGTGGTGAGCTTCGCGTCACGGAACCGTTCATAGGTCCTCTTCATGATTAATTATCTAGATCCGAATGTATCAGACACAGAGTAGATGAAG AAATATTTATAATGTCAAAAGAATACGATGATGACAATGGGACCAATAAAGACGAAGATAACAGTAAACAGCAAAATAGAGAATGG ]
[+] EMBL CD179032 [ AGAATGTGTCAGTTTCCGCGCTGGTAGAGACCGGCTTCGTTATTTTATTGTTTTTAACACAACTGACATGCCAGAGGTTCCGTATTTCGGTGGCCACTAGCAGAAGAGGACGAAATTCATAGTGAATCTCGTGTCACGGACCGTTCATAGGCCCTCTCCGTGACTAAGGATACAGGTGTTAAGGATATCATAAAAGAAGTAAATGGGGGAAGGGTTACAATGACAATAAAATAAAATGAGGAAAGTAAAACCAATAAGACGATGACAGAGAAACAGGAAAATAGAGAATGGAGTGTGATACAGACAAACCTAGATAGTAGAGTGCTTC T CCAAAATTAAAACGATTTGGGCATATTTAATAG TACATGAG ]
[-] EMBL CD134073 [ gcnttnCGTTA TTTATTGTTTTTAACACANCTGACATGCCAGAGGTTNCGTATTTCGGTGGCCACTAGCAGAAGAGGACGAAATTCATAGTGATTCTCGCGTCACGGACCGTTCATAGGCCCTCTCCGTGACTAAGTATACAGGTGTTAAGGATATCATAAAAGAAGTAAATGGAGGAAGGGTTACAATGACAATAAAATAAAGTGAGGAAAGTAAAACCAATAAGACGATGACAGAGAAACAGGAAAATAGAGAATGGAGTGTGATACAGACAAACCTAGATAGTAGACTGCTTC T CCAAAATTAAAACGATTTGGGCATATTTAATAG CACAAGAGGACGAAATTGGTGGTGAGCTTCGTGTCACGGAACCGTTCATAGGTC ]
[+] EMBL CD085904 [ ATTCATAGTGAATCTCGTGTCACGGACCGTTCATAGGCCCTCTCCGTGACTAAGGATACAGGTGTTAAGGATATCATAAAAGAAGTAAATGGGGGAAGGGTTACAATGACAATAAAATAAAATGAGGAAAGTAAAACCAATAAGACGATGACAGAGAAACAGGAAAATAGAGAATGGAGTGTGATACAGACAAACCTAGATAGTAGAGTGCTTC T CCAAAATTAAAACGATTTGGGCATATTTAATAG CACAAGAGGACGAAGTTGGTGGTGAGCTTCGCGTCACGGAACCGTTCATAGGTCCTCTTCATGATTAATTATCTAGATCCGAATGTATCAGACACAGAGTAGATGAAG AAATATTTATAATGTCAAAAGAATACGATGATGACAATGGGACCAATAAAGACGAAGATAACAGTTAACAGCAAAATAGAGAATGGAGTGTGATACAGACAAACCTA ]
[+] EMBL CD086082 [ ATTCATAGTGAATCTCGTGTCACGGACCGTTCATAGGCCCTCTCCGTGACTAAGGATACAGGTGTTAAGGATATCATAAAAGAAGTAAATGGGGGAAGGGTTACAATGACAATAAAATAAAATGAGGAAAGTAAAACCAATAAGACGATGACAGAGAAACAGGAAAATAGAGAATGGAGTGTGATACAGACAAACCTAGATAGTAGAGAGCTTC T CCAAAATTAAAACGATTTGGGCATATTTAATAG CACAAGAGGACGAAATTGGTGGTGAGCTTCGCGTCACGGAACCGTTCATAGGTCCTCTTCATGATTAATTATCTAGATCCGAATGTATCAGACACAGAGTAGATGAAG AAATATTTATAATGTCAAAAGAATACGATGATGACAATGGGACCAATAAAGACGAAGATAACAGTAAACAGCAAAATAGAGAATGGAGTGTGATACAGACAAACCTA ]
[+] EMBL CD086013 [ ATTCATAGTGAATCTCGTGTCACGGACCGTTCATAGGCCCTCTCCGTGACTAAGGATACAGGTGTTAAGGATATCATAAAAGAAGTAAATGGGGGAAGGGTTACAATGACAATAAAATAAAATGAGGAAAGTAAAACCAATAAGACGATGACAGAGAAACAGGAAAATAGAGAATGGAGTGTGATACAGACAAACCTAGATAGTAGAGTGCTTC T CCAAAATTAAAACGATTTGGGCATATTTAATAG CACAAGAGGACGAAGTTGGTGGTGAGCTTCGCGTCACGGAACCGTTCATAGGTCCTCTTCATGATTAATTATCTAGATCCGAATGTATCAGACACAGAGTAGATGAAG AAATATTTATAATGTCAAAAGAATACGATGATGACAATGGGACCAATAAAGACGAAGATAACAGTAAACAGCAAAATAGAGAATGGAGTGTGATACAGACAAACCTA ]
[-] EMBL CD199132 [ ATTGAGTGTGATACAGGCAAACCTAGATAGTAGAGTGCCTCTT CAAAAATTGAAACGATTTGGGCATATTT ATAGCCACAAGAGGACGAAATTGGTGGTGAGCTGCGCGTCACGGAACCGTTCATAGGTCCTCTTCATGATTAATTATCTAGATCCGAATGTATCAGACACAGAGTAGATGAAG AAATATTTATAATGTCAAAAGAATACGATGATGACAATGGGACCAATAAAGACGAAGATAACAGTAAACAGCAAAATAGAGAATGGAGTATGATACAGACAAACCTAGATAGTAGAGTGCTTCTCCAAAATTGAAACGATTTGGGCATAATTAATAGTACAAGAGGACGAAA ]
[-] EMBL CD198958 [ ATGGAGTGTGATACAGACAAACCTAGATAGTAGAGTGC TC TNNCAAAATTGAAACGATTTGGGCATATTTAATAG CACAAGAGGACGAAATTGGTGGTGAGCTTCGCGTCACGGAACCGTTCATAGGTCCTCTTCATGATTAATTATCTAGATCCGAATGTATCAGACACAGAGTAGATGAAG AAATATTTATAATGTCAAAAGAATACGATGATGACAATGGGACCAATAAAGACGAAGATAACAGTAAACAGCAAAATAGAGAATGGAGTATGATACAGACAAACCTAGATAGTAGAGTGCTTCTCCAAAATTGAAACGATTT GGCATAATTAATAGTACAAGAGGACGAAA ]
[-] EMBL CD077737 [ CGAATGTATCAGACACAGAGTAGATGAAGNAAATATTTATAATGTCAAAAGAATACGATGATGACAATGGGACCAATAAAGACGAAGATAACAGTAAACAGCAAAATAGAGAATGGAGTGTGATACAGACAAACCTAGATAGTAGAGTGCTTCTCCAAAATTGAAACGATTTGGGCATAATTAATAGTACAAGAGGACGAAATTGGTGGTGAGCTTCGCGTCACGGAACCGCCTCGGACCGAATTCTTGGCCTGGAN]
consensusID : consensus_10885#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 923 fasta sequence
[CATTTATTTTTAAGTATCAAATTGTACAGACCCAAATGGGTTTGGCACAAAATTACATACTTAAGATTTGTAAAAGAGAGATATTCGGTTAGACTGAATTGTAAGTTTATAACTCAGGGGAAATAGAGAGAGTTTAATAGGTGGATATAATTGAGATGTTTGATTGATATTTTATTGGTGTGCTGAGAGGAGTAGCCATAATATTAATTGTAGAAGTAATAATAGTAATAATAATAATAGTAATAATGTTTATAATAATGTTAATAGTAATGAAAATAATAATAGTAGTTGTAGTGGTGGTAATAGGAATAGTCATTATAAACATCAGATTCCGCCATGAACATATGAAGGCAATCGAAACCAAGAGGACAAACTAAGGTAGATAAAGTAATTGTCGTTAGACATGGCAAGTAAACAAAGACATAATATGACAACTATTGGAAGTAAGCGGGCAGAGCAAGCAATATGGAAAGAGAGAGAGACAATCAGACGTCAACCCAGAAGAGAGCAGTCAATTAACACAAGAGCATGAAGATAAGCAACAACAGTGGGGGAATGTCTAAGAGTGAAGGGGGCTATTCGTTCAGCCGTTGGGTTCCTCTCATATAGGTATTATATATTTTAATTGAGCCTTGAATCGCACTCAGGCAAAGGTCACCGAGGTCACGGGATGAAAAACATAGGCGTCGTAGGGATTGTGAACTTGCTCTATCCAGAATACCTCTGAATGTAAGGACGACTGGTGTTTGTCGAACACTGGTAATGATATATCCACTGGATGTGAGGAAACGCTTGATCGACGCGACGGTTCGCTCATTGCCGTATTTTGATATTTTTAACAGGCGGCTGGCGTGGGTGTTTCCGTCGTCCGATACAGTGACGTCTAGAACATAAGCAATTGAGTCACGTATAATTATAAAATC]
[+] EMBL CD076233 [CATTTATTTTTAAGTATCAAATTGTACAGACCCAAATGGGTTTGGCACAAAATTACATACTTAAGATTTGTAAAAGAGAGATATTCGGTTAGACTGAATTGTAAGTTTATAACTCAGGGGAAATAGAGAGAGTTTAATAGGTGGATATAATTGAGATGTTTGATTGATATTTTATTGGTGTGCTGAGAGGAGTAGCCATAATATTAATTGTAGAAGTAATAATAGTAATAATAATAATAGTAATAATGTTTATAATAATGTTAATAGTAATGAAAATAATAATAGTAGTTGTAGTGGTGGTAATAGGAATAGTCATTATAAACATCAGATTCCGCCATGAACATATGAAGGCAATCGAAACCAAGAGGACAAACTAAGGTAGATAAAGTAATTGTCGTTAGACATGGCAAGTAAACAAAGACATAATATGACAACTATTGGAAGTAAGCGGGCAGAGCAAGCAATATGGAAAGAGAGAGAGACAATCAGACGTCAACCCAGAAGAGAGCAGTCAATTAACACAAGAGCATGAAGATAAGCAACAACAGTGGGGG ]
[+] EMBL CD140613 [ AGGTAGATAAAGTAATTGTCGTTAGACATGGCAAGTAAACAAAGACATAATATGACAACTATTGGAAGTAAGCGGGCAGAGCAAGCAATATGGAAAGAGAGAGAGACAATCAGACGTCAACCCAGAAGAGAGCAGTCAATTAACACAAGAGCATGAAGATAAGCAACAACAGTGGGGGAATGTCTAAGAGTGAAGGGGGCTATTCGTTCAGCCGTTGGGTTCCTCTCATATAGGTATTATATATTTTAATTGAGCCTTGAATCGCACTCAGGCAAAGGTCACCGAGGTCACGGGATGAAAAACATAGGCGTCGTAGGGATTGTGAACTTGCTCTATCCAGAATACCTCTGAATGTAAGGACGACTGGTGTTTGTCGAACACTGGTAATGATA ]
[-] EMBL CD140653 [ GGTAGATAAAGTAATTGTCGTTAGACATGGCAAGTAAACAAAGACATAATATGACAACTATTGGAAGTAAGCGGGCAGAGCAAGCAATATGGAAAGAGAGAGAGACAATCAGACGTCAACCCAGAAGAGAGCAGTCAATTAACACAAGAGCATGAAGATAAGCAACAACAGTGGGGGAATGTCTAAGAGTGAAGGGGGCTATTCGTTCAGCCGTTGGGTTCCTCTCATATAGGTATTATATATTTTAATTGAGCCTTGAATCGCACTCAGGCAAAGGTCACCGAGGTCACGGGATGAAAAACATAGGCGTCGTAGGGATTGTGAACTTGCTCTATCCAGAATACCTCTGAATGTAAGGACGACTGGTGTTTGTCGAACACTGGTAATGATATA ]
[-] EMBL CD078013 [ ATTNACACNAGAGCATGAAGATAAGCACCACCAGTGGGGGAATGTCTAAGAGTGAAGGGGGCTATTCGTTCAGCCGTTGGGTTCCTCTCATATAGGTATTATATATTTTAATTGAGCCTTGAATCGCACTCAGGCAAAGGTCACCGAGGTCACGGGATGAAAAACATAGGCGTCGTAGGGATTGTGAACTTGCTCTATCCAGAATACCTCTGAATGTAAGGACGACTGGTGTTTGTCGAACACTGGTAATGATATATCCACTGGATGTGAGGAAACGCTTGATCGACGCGACGGTTCGCTCATTGCCGTATTTTGATATTTTTAACAGGCGGCTGGCGTGGGTGTTTCCGTCGTCCG ]
[+] EMBL CD179189 [ nCATGAAGATAAGCAACAACAGTGGTGGAATGTCTAAGAGTGAAGGGGGCTATTCATTCAGCCGTTGGGTTCCTCTCATATAGGTATTATATATTTTAATTGAGCCTTGAATCGCACTCAGGCAAAGGTCACCGAGGTCACGGGATGAAAAACATAGGCGTCGTAGGGATTGTGAACTTGCTCTATCCAGAATACCTCTGAATGTAAGGACGACTGGTGTTTGTCGAACACTGGTAATGATATATCCACTGTATGTGAGGAAACGC ]
[+] EMBL CD185953 [ AAGAGTGAAGGGGGCTATTCGTTCAGCCGTTGGGTTCCTCTCATATAGGTATTATATATTTTAATTGAGCCTTGAATCGCACTCAGGCAAAGGTCACCGAGGTCACGGGATGAAAAACATAGGCGTCGTAGGGATTGTGAACTTGCTCTATCCAGAATACCTCTGAATGTAAGGACGACTGGTGTTTGTCGAACACTGGTAATGATATATCCACTGGATGTGAGGAAACGCTTGATCGACGCGACGGTTCGCTCATTGCCGTATTTTGATATTTTTAACAGGCGGCTGGCGTGGGTGTTTCCGTCGTCCGATACAGTGACGTCTAGAACATAAGCAATTGAGTCACGTATAATTATAAAATC]
consensusID : consensus_10885#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 686 fasta sequence
[CGGGAATTCAATTCTGCTTTANAGAGAGAGGGGTCTCGTGGGTGAGGAGTTTTCCCGGGACGTTGAAAAGGTGGGAGAACACGTTACAGGCTTAGATGAGCAGGGTAATTAATGAGACAGCAATAGACAATAAGGCAAAGACGAAAGAAGGAAGAGAGAAGAAAAGAAAAGAAAAAAAAAGGAAAAGGAGAGAAAAAAAAAGAAGAAGAAAAAAAAGAGGGTGGAACAGTAGAGAATAAGGAGAAAGGAACAAAAACAGAATGTGTCAGTTTCCGCGCTGGTAGAGACCGGCTTCGTTATTTTATTGTTTTTAACACAACTGACATGCCAGAGGTTCCGTATTTCGGTGGCCACTAGCAGAAGAGGACGAAATTCATAGTGAATCTCGTGTCACGGACCGTTCATAGGCCCTCTCCGTGACTAAGTATACAGGTGTTAAGGATATCATAAAAGAAGTAAATGGGGGAAGGGTTACAATGACAATAAAATAAAATGAGGAAAGTAAAACCAATAAGACGATGACAGAGAAACAGGAAAATAGAGAATGGAGTGTGATACAGACAAACCTAGATAGTAGAGTGATTCTCCAAAATTAAAACGATTTGGGCATATTTAATAGCACAAGAGGACGAAATTGGTGGTGAGCTTCGTGTCACGGAACCGCCTCGTGCCGAATTCTGGCCTCG]
[+] EMBL CD197941 [CGGGAATTCAATTCTGCTTTANAGAGAGAGGGGTCTCGTGGGTGAGGAGTTTTCCCGGGACGTTGAAAAGGTGGGAGAACACGTTACAGGCTTAGATGAGCAGGGTAATTAATGAGACAGCAATAGACAATAAGGCAAAGACGAAAGAAGGAAGAGAGAAGAAAAGAAAAGAAAAAAAAAGGAAAAGGAGAGAAAAAAAAAGAAGAAGAAAAAAAAGAGGGTGGAACAGTAGAGAATAAGGAGAAAGGAACAAAAACAGAATGTGTCAGTTTCCGCGCTGGTAGAGACCGGCTTCGTTATTTTATTGTTTTTAACACAACTGACATGCCAGAGGTTCCGTATTTCGGTGGCCACTAGCAGAAGAGGACGAAATTCATAGTGAATCTCGTGTCACGGACC ]
[-] EMBL CD082697 [ GTAGAGAATAAGGAGAAAGGAACAAAAACAGAATGTGTCAGTTTCCGCGCTGGTAGAGACCGGCTTCGTTATTTTATTGTTTTTAACACAACTGACATGCCAGAGGTTCCGTATTTCGGTGGCCACTAGCAGAAGAGGACGAAATTCATAGTGAATCTCGTGTCACGGACCGTTCATAGGCCCTCTCCGTGACTAAGTATACAGGTGTTAAGGATATCATAAAAGAAGTAAATGGGGGAAGGGTTACAATGACAATAAAATAAAATGAGGAAAGTAAAACCAATAAGACGATGACAGAGAAACAGGAAAATAGAGAATGGAGTGTGATACAGACAAACCTAGATAGTAGAGTGATTCTCCAAAATTAAAACGATTTGGGCATATTTAATAGCACAAGAGGACGAAATTGGTGGTGAGCTTCGTGTCACGGAACCGCCTCGTGCCGAATTCTGGCCTCG]
consensusID : consensus_10885#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 416 fasta sequence
[TAGATCCGAATGTATCAGACTCAGAGTAGATGAAGAAATATTTATAATGTCAAAAGAATACGATGATGACAATGGGACCAATAAAGACGAAGATAACAGTAAACAGCAAAATAGAGAATGGAGTGTGATACAGACAAACCTAGATAGTAGAGTGCTTCTCCAAAATTGGAACGATTTGGGCATATTTAATAGCACAAGAGGACGAGATTGGTGGTGAGCTTCGCGTCACGGAACCGTTCATAGGTCCTCTTCATGATTAATTATCTAGATCCGAATGTATCAGACACAGAGTAGATGAAGAAATATTTATAATGTCAAAAGAATACGATGATGACAATGGGACCAATAAAGACGAAGATAACAGTAAACAGCAAAATAGAGAATGGAGTATGATACAGACAAACCTAGATAGTAGA]
[-] EMBL CD178089 [TAGATCCGAATGTATCAGACTCAGAGTAGATGAAGAAATATTTATAATGTCAAAAGAATACGATGATGACAATGGGACCAATAAAGACGAAGATAACAGTAAACAGCAAAATAGAGAATGGAGTGTGATACAGACAAACCTAGATAGTAGAGTGCTTCTCCAAAATTGGAACGATTTGGGCATATTTAATAGCACAAGAGGACGAGATTGGTGGTGAGCTTCGCGTCACGGAACCGTTCATAGGTCCTCTTCATGATTAATTATCTAGATCCGAATGTATCAGACACAGAGTAGATGAAGAAATATTTATAATGTCAAAAGAATACGATGATGACAATGGGACCAATAAAGACGAAGATAACAGTAAACAGCAAAATAGAGAATGGAGTATGATACAGACAAACCTAGATAGTA ]
[-] EMBL CD178090 [ ggATCAGACACAGAGTAGATGAAGTGATATTTATAATGTCAACAGAATACGATGATGACAATGGGACCAATAAAGACGAAGATAACAGTAAACAGCAAAATAGAGAATGGAGTGTGATACAGACAAACCTAGATAGTAGAGTGATTCTCCAAAATTGGAACGATTTGGGCATATTTAATAGCACAAGAGGACGAGATTGGTGGTGAGCTTCGCGTCACGGAACCGTTCATAGGTCCTCTTCATGATTAATTATCTAGATCCGAATGTATCAGACACAGAGTAGATGAAGAAATATTTATAATGTCAAAAGAATACGATGATGACAATGGGACCAATAAAGACGAAGATAACAGTAAACAGCAAAATAGAGAATGGAGTATGATACAGACAAACCTAGATAGTA ]
[-] EMBL CD193999 [ TACGATGATGACAAT GGACCAATAAAGACGAAGATAACAGTAAACAGCAAAATAGAGAATGGAGTGTGATACAGACAAACCTAGATAGTAGAGTGCTTCTCCAAAATTGAAACGATTTGGGCATAATTAATAGTACAAGAGGACGAAATTGGTGGTGAGCTTCGCGTCACGGAACCGTTCATAGGTCCTCTTCATGATTAATTATCTAGATCCGAATGTATCAGACACAGAGTAGATGAAGAAATATTTATAATGTCAAAAGAATACGATGATGACAATGGGACCAATAAAGACGAAGATAACAGTAAACAGCAAAATAGAGAATGGAGTATGATACAGACAAACCTAGATAGTAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10885#0 CATTTATTTTTAAGTATCAAATTGTACAGACCCAAATGGGTTTGGCACAAAATTAAATAC 60
consensus_10885#2 ------------------------------------------------------------
consensus_10885#3 ------------------------------------------------------------
consensus_10885#1 ------------------------------------------------------------
consensus_10885#0 TTAAGATGTGTAAACAAGGTGTTTTGTTACACTGAATTACAAGGTTGTATGAGAGAAAAA 120
consensus_10885#2 ------------------------------------------------------------
consensus_10885#3 ------------------------------------------------------------
consensus_10885#1 ------------------------------------------------------------
consensus_10885#0 ATAGAAGATGAAGAAGGAGAATTGCAAGATGATAGAATTAAAACATGTTAAGTTTCCGAA 180
consensus_10885#2 ------------------------------------------------------------
consensus_10885#3 ------------------------------------------------------------
consensus_10885#1 ------------------------------------------------------------
consensus_10885#0 ATGCACAGATGGGCGAGTAGGAATAACTATAGTAATAATAATAATAATAATATACTAAAA 240
consensus_10885#2 ------------------------------------------------------------
consensus_10885#3 ------------------------------------------------------------
consensus_10885#1 ------------------------------------------------------------
consensus_10885#0 TAACAATAACAATAGTGGTAAAGTAATAATAAGAATGGCACTAATAACAATAATAATAAT 300
consensus_10885#2 ------------------------------------------------------------
consensus_10885#3 ------------------------------------------------------------
consensus_10885#1 ------------------------------------------------------------
consensus_10885#0 AATAAAATGATAATAATAATGGCATTAGTAACAATCAGGATATTGTGGACAGGCAAATGA 360
consensus_10885#2 ------------------------------------------------------------
consensus_10885#3 ------------------------------------------------------------
consensus_10885#1 ----------------------------------------------------------CA 2
consensus_10885#0 GGTAACCAGTGTATGGGTACCCA---CCAAATTAGAGAGA-AGGGGTCTCGTGGGTGAGG 416
consensus_10885#2 -------------CGGGAATTCAATTCTGCTTTANAGAGAGAGGGGTCTCGTGGGTGAGG 47
consensus_10885#3 ------------------------------------------------------------
consensus_10885#1 TTTATTTTTAAGTATCAAATTGTACAGACCCAAATGGGTTTGGCACAAAATTACATACTT 62
consensus_10885#0 AGTCAGCACGGGACGTTGAAAAGGTGGGAGAACACGTTACAGGCTTAGATGAGCAGGGTA 476
consensus_10885#2 AGTTTTCCCGGGACGTTGAAAAGGTGGGAGAACACGTTACAGGCTTAGATGAGCAGGGTA 107
consensus_10885#3 ------------------------------------------------------------
consensus_10885#1 AAGATTTGTAAAAGAGAGATATTCGGTTAGACTGAATTGTAAGTTTATA-ACTCAGGGGA 121
consensus_10885#0 ATTAATGAGACAGCAATAGACA-AGAAGGCAAAGACGAAAGAAAGAAGAGAGAAGAAAAG 535
consensus_10885#2 ATTAATGAGACAGCAATAGACA-ATAAGGCAAAGACGAAAGAAGGAAGAGAGAAGAAAAG 166
consensus_10885#3 -----------------------------TAGATCCGAATGTATCAGACTCAGAGTAGAT 31
consensus_10885#1 AATAGAGAGAGTTTAATAGGTGGATATAATTGAGATGTTTGATTGATATTTTATTGGTGT 181
* * * *
consensus_10885#0 AAAAGAAAAAAAA-GGAAAAGGAGAG----AAAAAAA-----GAAGAAAAAAAAAAGGGT 585
consensus_10885#2 AAAAGAAAAAAAAAGGAAAAGGAGAG----AAAAAAAAAGAAGAAGAAAAAAAAGAGGGT 222
consensus_10885#3 ----GAAGAAATATTTATAATGTCAA----AAGAATAC----GATGATGACAATGGGACC 79
consensus_10885#1 GCTGAGAGGAGTAGCCATAATATTAATTGTAGAAGTAATAATAGTAATAATAATAATAGT 241
* * * * ** * * * * * * **
consensus_10885#0 GGAACAGTAGAGAATAAGGAGAAAGGAACAAAAACAGAATGTGTCAGTTTCCGCGCTGGT 645
consensus_10885#2 GGAACAGTAGAGAATAAGGAGAAAGGAACAAAAACAGAATGTGTCAGTTTCCGCGCTGGT 282
consensus_10885#3 AATAAAGACGAAGATAACAGTAAACAGCAAAATAGAGAATGGAGTG----------TGAT 129
consensus_10885#1 AATAATGTTTATAATAATGTTAATAGTAATGAAAATAATAATAGTAGTT---GTAGTGGT 298
* * * **** ** * * * ** *
consensus_10885#0 AGAGACCGGCTTCGTTATTTTATTGTTTT--TAACACAACTGACATGCCAGAGGTTCCGT 703
consensus_10885#2 AGAGACCGGCTTCGTTATTTTATTGTTTT--TAACACAACTGACATGCCAGAGGTTCCGT 340
consensus_10885#3 ACAGACAAACCTAGATAGTAGAGTGCTTC--TC-CAAAATTGGAACGATTTGGG---CAT 183
consensus_10885#1 GGTAATAGGAATAGTCATTATAAACATCAGATTCCGCCATGAACATATGAAGGCAATCGA 358
* * * * * * * * * * * * *
consensus_10885#0 ATTTCGGTGGCCACTAGCAGAAGAGGACGAAATTCATAGTGAATCTCGTGTCACGGA-CC 762
consensus_10885#2 ATTTCGGTGGCCACTAGCAGAAGAGGACGAAATTCATAGTGAATCTCGTGTCACGGA-CC 399
consensus_10885#3 ATTT--------AATAGCACAAGAGGACGAGATTGGTGGTGAGCTTCGCGTCACGGAACC 235
consensus_10885#1 AACCAAGAGG--ACAAACTAAGGTAGATAAAGTAATTGTCGTTAGACATGGCAAGTAAAC 416
* * * * * * ** * * * * * * ** * * *
consensus_10885#0 GTTCATAGGCCCTCTCCGTGACTAAGTATACAGGTGTTAAGGATATCATAAAAGAAGTAA 822
consensus_10885#2 GTTCATAGGCCCTCTCCGTGACTAAGTATACAGGTGTTAAGGATATCATAAAAGAAGTAA 459
consensus_10885#3 GTTCATAGGTCCTCTTCATGATTAATTATCTAGAT-CCGAATGTATCAGACACAGAGTAG 294
consensus_10885#1 AAAGACATAATATGACAACTATTGGAAGTAAGCGGGCAGAGCAAGCAATATGGAAAG--- 473
* * * * * * * * * **
consensus_10885#0 ATGGGGGAAGGGTTACAATGACAATAAAATAAAATGAGGAAAGTAAAACCAATAA-GACG 881
consensus_10885#2 ATGGGGGAAGGGTTACAATGACAATAAAATAAAATGAGGAAAGTAAAACCAATAA-GACG 518
consensus_10885#3 ATGAAGAAATATTTATAATGTCAAAAGAATACGATGATGACAATGGGACCAATAAAGACG 354
consensus_10885#1 AGAGAGAGACAATCA-GACGTCAACCCAGAAGAGAGCAGTCAATTAACACAAGAG-CATG 531
* * * * * * * *** * * * * * * *** * * *
consensus_10885#0 ATGACAGAG--AAACAGGAAAATAGAGAATGGAGTGTGATACAGACAAACC--TAGATAG 937
consensus_10885#2 ATGACAGAG--AAACAGGAAAATAGAGAATGGAGTGTGATACAGACAAACC--TAGATAG 574
consensus_10885#3 AAGATAACAGTAAACAGCAAAATAGAGAATGGAGTATGATACAGACAAACC--TAGATAG 412
consensus_10885#1 AAGATAAGCAACAACAGTGGGGGAATGTCTA-AGAGTGAAGGGGGCTATTCGTTCAGCCG 590
* ** * ***** * * * ** *** * * * * * *
consensus_10885#0 TAGAGTGCTTCTC---CAAAATTAAAACGATTTGGGCATATTTAATAGCACAAGAGGACG 994
consensus_10885#2 TAGAGTGATTCTC---CAAAATTAAAACGATTTGGGCATATTTAATAGCACAAGAGGACG 631
consensus_10885#3 TAGA-------------------------------------------------------- 416
consensus_10885#1 TTGGGTTCCTCTCATATAGGTATTATATATTTTAATTGAGCCTTGAATCGCACTCAGGCA 650
* *
consensus_10885#0 AAATTGGTGGTGAGCTTCGCGTCACGGAACCGTTCATAGGTCCTCTTCATGATTAATTAT 1054
consensus_10885#2 AAATTGGTGGTGAGCTTCGTGTCACGGAACCGC-CTCGTGCCGAATTCTGGCCTCG---- 686
consensus_10885#3 ------------------------------------------------------------
consensus_10885#1 AAGGTCACCGAGGTCACGGGATGAAAAACATAGGCGTCGTAGGGATTGTGAACTTGCTCT 710
consensus_10885#0 CTAGATCCGAATGTATCAGACACAGAGTAGATGAAGAAATATTTATAATGTCAAAAGAAT 1114
consensus_10885#2 ------------------------------------------------------------
consensus_10885#3 ------------------------------------------------------------
consensus_10885#1 ATCCAGAATACCTCTGAATGTAAGGACGACTGGTGTTTGTCGAACACTGGTAATGATATA 770
consensus_10885#0 ACGATGATGACAATGGGACCAATAAAGACGAAGATAACAGTAAACAGCAAAATAGAGAAT 1174
consensus_10885#2 ------------------------------------------------------------
consensus_10885#3 ------------------------------------------------------------
consensus_10885#1 TCCACTGGATGTGAGGAAACGCTTGATCGACGCGACGGTTCGCTCATTGCCGTATTTTGA 830
consensus_10885#0 GGAGTGTGATACAGACAAACCTAGATAGTAGAGTGCTTCTCCAAAATTGAAACGATTTGG 1234
consensus_10885#2 ------------------------------------------------------------
consensus_10885#3 ------------------------------------------------------------
consensus_10885#1 TATTTTTAACAGGCGGCTGGCGTGGGTGTTTCCGTCGTCCGATACAGTGACGTCTAGAAC 890
consensus_10885#0 CATAATTAATAGTACAAGAGGACGAAATTGGTGGTGAGCTTCGCGTCACGGAACCGCCTC 1294
consensus_10885#2 ------------------------------------------------------------
consensus_10885#3 ------------------------------------------------------------
consensus_10885#1 ATAAGCAATTGAGTCACGTATAATTATAAAATC--------------------------- 923
consensus_10885#0 GGACCGAATTCTTGGCCTGGAN 1316
consensus_10885#2 ----------------------
consensus_10885#3 ----------------------
consensus_10885#1 ----------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||