These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1089#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 335 fasta sequence [TACGTGAGGATGTGATAAACAAGATGAGGCAGACTTTATAGCTAAATGATCTATGTTTACAGCTTGAGGAGCATCAGGAACTAAGAATTTATCGAATATCTCATTTGCTTTCTTTTTCACATTCCCGGTTTCGAAGACATGACGCCATGTACGGACTGAGAGCAGAAAATCAAGATTTTCACTGCTGAATTCTGTTATCAGAAGTTTCCTAAATTCATTACAAGCAACGGGGTCATTTAGAAGGTTATCAAAATCTTCCGCCCATGATATTGGATTTGATGACGCAGNTGACGGATTATTAGGTGGCTCTATATTTTCAGTATCTTCATTTTCAA] [+] EMBL CD195969 [TACGTGAGGATGTGATAAACAAGATGAGGCAGACTTTATAGCTAAATGATCTATGTTTACAGCTTGAGGAGCATCAGGAACTAAGAATTTATCGAATATCTCATTTGCTTTCTTTTTCACATTCCCGGTTTCGAAGACATGACGCCATGTACGGACTGAGAGCAGAAAATCAAGATTTTCACTGCTGAATTCTGTTATCAGAAGTTTCCTAAATTCATTACAAGCAACGGGGTCATTTAGAAGGTTATCAAAATCTTCCGCCCATGATATTGGATTTGATGACGCAGNTGACGGATTATTAGGTGGCTCTATATTTTCAGTATCTTCATTTTCAA] consensusID : consensus_1089#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 156 fasta sequence [TTCAGTGGTTTGTCTTTAGAATACGTAGTTAAGCTTCTTTGAATTGACTAAATATTTTTTGACCTCAACTTGCTGCTACTATCTTTTCTTTCAGAAATTTCTGATAACAGAATTCAGCAGCGAAAATCTTGATTTTCTGCTCTCAGTCCGTACATG] [+] EMBL CD187818 [TTCAGTGGTTTGTCTTTAGAATACGTAGTTAAGCTTCTTTGAATTGACTAAATATTTTTTGACCTCAACTTGCTGCTACTATCTTTTCTTTCAGAAATTTCTGATAACAGAATTCAGCAGCGAAAATCTTGATTTTCTGCTCTCAGTCCGTACATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1089#0 TACGTGAGGATGTGATAAACAAGATGAGGCAGACTTTATAGCTAAATGATCTATGTTTAC 60 consensus_1089#1 -----------------------------------------TTCAGTGGTTTGTCTTTAG 19 * * ** * * * **** consensus_1089#0 AGCTTGAGGAGCATCAGGAACTAAGAATTTATCGAATATCTCAT----TTGCTTTCTTTT 116 consensus_1089#1 AATACGTAG---TTAAGCTTCTTTGAATTGACTAAATATTTTTTGACCTCAACTTGCTGC 76 * * * * ** ** ***** * ***** * * * ** * consensus_1089#0 TCACATTCCCGGTTTCGAAGACATGACGCCATGTACGGACTGAGAGCAGAAAATCAAGAT 176 consensus_1089#1 TACTATCTTTTCTTTCAGAAATTT---CTGATAACAGAATTCAGCAGCGAAAATCTTGAT 133 * ** **** * * * ** * * * ** ******* *** consensus_1089#0 TTTCACTGCTGAATTCTGTTATCAGAAGTTTCCTAAATTCATTACAAGCAACGGGGTCAT 236 consensus_1089#1 TTTCTGCTCTCAGTCCGTACATG------------------------------------- 156 **** ** * * * ** consensus_1089#0 TTAGAAGGTTATCAAAATCTTCCGCCCATGATATTGGATTTGATGACGCAGNTGACGGAT 296 consensus_1089#1 ------------------------------------------------------------ consensus_1089#0 TATTAGGTGGCTCTATATTTTCAGTATCTTCATTTTCAA 335 consensus_1089#1 --------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||