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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10890#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 928 fasta sequence
[TCGCTACAATATGTATCCGAATCAGGG-A-CTTATGTTTAATGAG-TTCCCACTAGATCAACATACTCTTCGAGATCTCAACCGCCATGAAAAAAGTTTAGGTCTACTCACGGAAAAGTTTGTT-CAGCTTCTTAAAGAGGCTCCAGATGGAATTTTG-GACCTTAAAATGGCGGCAGATTTCCTAGCTGTGAGGCAAAAAAGAAGGATCTATGACATTACGAATGTTTTGGAAGGTATAGGTTTGATAGAAAAGCGAACTAAAAACAGTATTCAGTGGAAGGGAGGAAGTGCAGCTACAAATGGACCTGATATTCAAGCTCGTCTGGATGAACTTCAAGCTGAAGTTGAGTATTTAGAAAATTTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAAGAAGATTTAGATAATCTGCAATACGCTTATGTTACTCATCAAGATCTGATTAATATTTTTCAAGATCGTACAATGCTGATAATACGTGCACCACCTGGAACTAAACTGGAAGCACCTGTACCTGAAAATCCTATGGACCAACAACCTGTTCAAACGATTTTCTCATTAAAACGTTCATACAAAGTTCATGTGAAAAGCTTCACAACACCTATTCACGTTTTGTTGGTAAATCAAGAAGAGGGTAGTGACAAAGCTCGTGTACTCCCAGTGCCAGCAACTTCGGACTCTATTGCTCTCGCTCGTCGTCCCGCCC-TGAAATCTAATGAAGAGAAAGCATTTGTGAGTCCATTATTGCCACTCAGTCCACCTCCCAGTGAATGTG-ATTTCAA-CTA-CAATCTGGATGATACAGAA-GGTGTTTGCGAT-TTATTTGATATTCCTGTTATCTCCACATCTACCAA-CTAACTATTTATTGTACGCTTTCTATAAAACAATAAGACAT-ATAT-AATAAGT]
[+] EMBL CD153578 [TCGCTACAATATGTATCCGAATCAGGG A CTTATGTTTAATGAG TTCCCACTAGATCAACATACTCTTCGAGATCTCAACCGCCATGAAAAAAGTTTAGGTCTACTCACGGAAAAGTTTGTT CAGCTTCTTAAAGAGGCTCCAGATGGAATTTTG GACCTTAAAATGGCGGCAGATTTCCTAGCTGTGAGGCAAAAAAGAAGGATCTATGACATTACGAATGTTTTGGAAGGTATAGGTTTGATAGAAAAGCGAACTAAAAACAGTATTCAGTGGAACGGAGGAAGTGCAGCTACAAATGGACCTGATATTCAAGCTCGTCTGGATGAACTTCAAGCTGAAGTTGAGTATTTAGAAAATTTAGAACAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAAG ]
[+] EMBL CD153620 [TCGCTACAATATGTATCCGAATCAGGC A CTTATGTTTAATGAG TTCCCACTAGATCAACATACTCTTCGAGATCTCAACCGCCATGAAAAAAGTTTAGGTCTACTCACGGAAAAGTTTGTT CAGCTTCTTAAAGAGGCTCCAGATGGAATTTTG GACCTTAAAATGGCGGCAGATTTCCTAGCTGTGAGGCAAAAAAGAAGGATCTATGACATTACGAATGTTTCGGAAGGTATAGGTTTGATAGAAAAGCGAACTAAAAACAGTATTCAGTGGAAGGGAGGAAGTGCAGCTACAAATGGACCTGATATTCAAGCTCGTCTGGATGAACTTCAAGCTGAAGTTGAGTATTTAGAAAATTTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAAGAAGATTTAGATTATCTG ]
[+] EMBL BF936252 [ AATATGTATCCGAATCATGG A CTTTTGTTTAATGAG TTCCCACTAGATCAACATACTCTTCGAGATCTCAACCGCCATGAAAAAAGTTTAGGTCTACTCACGGAAAAGTGTGCT CAGCTTCTTAAAGAGGCTCCAGATGGAATTTTG GACCTTAAAATGGCGGCAGATTTCCTAGCTGTGAGGCAAAAAAGAAGGATCTATGACATTACGAATGTTTTGGAAGGTATAGGTTTGATAGAAAAGCGAACTAAAAACAGTATTCAGTGGAAGGGAGGAAGTGCAGCTACAAATGGACCTGATATTCAAGCTCGTCTGGATGAACTTCAAGCTGAAGTTGAGTATTTAGAAAATTTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAAGAAGATTTAGATAATCTGCAATACGCTTATGTTACTCATCAAGATCTGATTAATATTTTTCAAGATCGTACAATGCTGATAATACGTGCACCACCTGGAACTAAACTGGAAACACCTGGTCCTGAAAATCCTATG ]
[+] EMBL CD081213 [ ATGTATCCGACTCAGGGNACCTTATGTTTAATGAGNTTCCCACTANATCAACATACTCTTCGAGATCTCAACCGCCATGAAAAAAGTTTAGGTCTACTCACGGAAAAGTTTGTTNCAGCTTCTTAAAGAGGCTCCAGATGGAATTTTG GACCTTAAAATGGCGGCAGATTTCCTAGCTGTGAGGCAAAAAAGAAGGATCTATGACATTACGAATGTTTTGGAAGGTATAGGTTTGATAGAAAAGCGAACTAAAAACAGTATTCAGTGGAAGGGAGGAAGTGCAGCTACAAATGGACCTGATATTCAAGCTCGTCTGGATGAACTTCAAGCTGAAGTTGAGTATTTAGAAAATTTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAAGAAGATTTAGATAATCTGCAATACGCTTATGTTACTCATCAAGATCTGATTAATATTTTTCAAGATCGTACAATGCTGATAATACGTGCACCACCTGGAACTAAACTGGAAGCACCTGTACCTGAAAATCCTATGGACCAACAACCTGTTCAAACGATTTTCTCATTAAAACGTTCATACAAAGTTCATGTGAAAAGCTTCACAACACCTATTCACGTTTTGTTGGTAAATCAAGAAGAGGGTAGTGACAAAGCTCGTGTACTCCCAGTGCCAGCAACTTCGGACTCTATTGCTCTCGCTCGTCGTCCCGCCC TGAAATCTAATGAAGAGAAAGCATTTGTGAGTCCATTATTGCCACTCAGTCCACCTCCCAGTGAATGTG ATTTCAANCTA C ATCTGGATGATACAGAAGGGTGTTTGCGAA TTATTTGATATTCCTGTTATCTCCACATCTACCAANCT ACTATTTATTGTACGCTTTCTATANNAC AT AGACAT ATTT AATA ]
[+] EMBL CD081153 [ gccgacgccGATGGAATTTTGNGACCTTAAAATGGCGGCAGATTTCCTAGCTGTGAGGCAAAAAAGAAGGATCTATGACATTACGAATGTTTTGGAAGGTATAGGTTTGATAGAAAAGCGAACTAAAAACAGTATTCAGTGGAAGGGAGGAAGTGCAGCTACAAATGGACCTGATATTCAAGCTCGTCTGGATGAACTTCAAGCTGAAGTTGAGTATTTAGAAAATTTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAAGAAGATTTAGATAATCTGCAATACGCTTATGTTACTCATCAAGATCTGATTAATATTTTTCAAGATCGTACAATGCTGATAATACGTGCACCACCTGGAACTAAACTGGTAGCACCTGTACCTGAAAATCCTATGGACCAACAACCTGTTCAAACGATTTTCTCATTAAAACGTTCATACAAAGTTCATGTGAAAAGCTTCACAACACCTATTCACGTTTTGTTGGTAAATCAAGAAGAGGGTAGTGACAAAGCTCGTGTACTCCCAGTGCCAGCAACTTCGGACTCTATTGCTCTCGCTCGTCGTCCCGCCC TGAAATCTAATGAAGAGAAAGCATTTGTGAGTCCATTATTGCCACTCAGTCCACCTCCCAGTGAATGTG ATTTCAA CTA CAATCTGGATGATACAGAA GGTGTTTGCGAT TTATTTGATATTCCTGTTATCTCCACATCTACCAA CTAACTATTTATTGTACGCTNTCTATTAAACAAT AGACAT ATATAAATAAG ]
[-] EMBL CD074970 [ ATTTTG GACCTTAAAATGGCGGCAGATTTCCTAGCTGTGAGGCAAAAAAGAAGGATCTATGACATTACGAATGTTTTGGAAGGTATAGGTTTGATAGAAAAGCGAACTAAAAACAGTATTCAGTGGAAGGGAGGAAGTGCAGCTACAAATGGACCTGATATTCAAGCTCGTCTGGATGAACTTCAAGCTGAAGTTGAGTATTTAGAAAATTTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAAGAAGATTTAGATAATCTGCAATACGCTTATGTTACTCATCAAGATCTGATTAATATTTTTCAAGATCGTACAATGCTGATAATACGTGCACCACCTGGAACTAAACTGGAAGCACCTGTACCTGAAAATCCTATGGACCAACAACCTGTTCAAACGATTTTCTCATTAAAACGTTCATACAAAGTTCATGTGAAAAGCTTCACAACACCTATTCACGTTTTGTTGGTAAATCAAGAAGAGGGTAGTGACAAAGCTCGTGTACTCCCAGTGCCAGCAACTTCGGACTCTATTGCTCTCGCTCGTCGTCCCGCCC TGAAATCTAATGAAGAGAAAGCATTTGTGAGTCCATTATTGCCACTCAGTCCACCTCCCAGTGAATGTG ATTTCAA CTA CAATCTGGATGATACAGAA GGTGTTTGCGAT TTATTTGATATTCCTGTTATCTCCACATCTACCAA AAAACTATTTATTGTACGCTTTCTATAAATCAATAAGACATAATA AATAAG ]
[-] EMBL CD075044 [ AATGGCGGCAGATTTCCTAGCTGTGAGGCAAAAAAGAAGGATCTATGACATTACGAATGTTTTGGAAGGTATAGGTTTGATAGAAAAGCGAACTAAAAACAGTATTCAGTGGAAGGGAGGAAGTGCAGCTACAAATGGACCTGATATTCAAGCTCGTCTGGATGAACTTCAAGCTGAAGTTGAGTATTTAGAAAATTTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAAGAAGATTTAGATAATCTGCAATACGCTTATGTTACTCATCAAGATCTGATTAATATTTTTCAAGATCGTACAATGCTGATAATACGTGCACCACCTGGAACTAAACTGGAAGCACCTGTACCTGAAAATCCTATGGACCAACAACCTGTTCAAACGATTTTCTCATTAAAACGTTCATACAAAGTTCATGTGAAAAGCTTCACAACACCTATTCACGTTTTGTTGGTAAATCAAGAAGAGGGTAGTGACAAAGCTCGTGTACTCCCAGTGCCAGCAACTTCGGACTCTATTGCTCTCGCTCGTCGTCCCGCCC TGAAATCTAATGAAGAGAAAGCATTTGTGAGTCCATTATTGCCACTCAGTCCACCTCCCAGTGAATGTG ATTTCAA CTA CAATCTGGATGATACAGAA GGTGTTTGCGAT TTATTTGATATTCCTGTTATCTCCACATCTACCAG ATAACTATTTATTGTACGCTTTCTATAAATCAATAAGACAT ATTA AATAAG ]
[-] EMBL CD074907 [ AANCAGTATTCAGTGGAAGGGAGGAAGTGCAGCTACAAATGGACCTGATATTCAAGCTCGTCTGGATGAACTTCAAGCTGAAGTTGAGTATTTAGAAAATTTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAAGAAGATTTAGATAATCTGCAATACGCTTATGTTACTCATCAAGATCTGATTAATATTTTTCAAGATCGTACAATGCTGATAATACGTGCACCACCTGGAACTAAACTGGAAGCACCTGTACCTGAAAATCCTATGGACCAACAACCTGTTCAAACGATTTTCTCATTAAAACGTTCATACAAAGTTCATGTGAAAAGCTTCACAACACCTATTCACGTTTTGTTGGTAAATCAAGAAGAGGGTAGTGACAAAGCTCGTGTACTCCCAGTGCCAGCAACTTCGGACTCTATTGCTCTCGCTCGTCGTCCCGCCC TGAAATCTAATGAAGAGAAAGCATTTGTGAGTCCATTATTGCCACTCAGTCCACCTCCCAGTGAATGTG ATTTCAA CTA CAATCTGGATGATACAGAA GGTGTTTGCGAT TTATTTGATATTCCTGTTATCTCCACATCTACCAA CTAACTATTTATTGTACGCTTTCTATAAAACAATAAGACAT ATA ]
[-] EMBL CD076710 [ ATTCAAGCTCGTCTGGATGAACTTCAAGCTGAAGTTGAGTATTTAGANAATTTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAAGAAGATTTAGATAATCTGCAATACGCTTATGTTACTCATCAAGATCTGATTAATATTTTTCAAGATCGTACAATGCTGATAATACGTGCACCACCTGGAACTAAACTGGAAGCACCTGTACCTGAAAATCCTATGGACCAACAACCTGTTCAAACGATTTTCTCATTAAAACGTTCATACAAAGTTCATGTGAAAAGCTTCACAACACCTATTCACGTTTTGTTGGTAAATCAAGAAGAGGGTAGTGACAAAGCTCGTGTACTCCCAGTGCCAGCAACTTCGGACTCTATTGCTCTCGCTCGTCGTCCCGCCC TGAAATCTAATGAAGAGAAAGCATTTGTGAGTCCATTATTGCCACTCAGTCCACCTCCCAGTGAATGTG ATTTCAA CTA CAATCTGGATGATACAGAA GGTGTTTGCGAT TTATTTGATATTCCTGTTATCTCCACATCTACCAA CTAACTATTTATTGTACGCTTTCTATAAAACAATAAGACAT ATA ]
[-] EMBL CD076429 [ CTGGAAATAAACTGGAAGCACCTGTACCTGAAAATCCTATGGACCAACAACCTGTTCAAACGATTTTTTCATTAAAACGTTCATACAAAGTTCATGTGAAAAGCTTCCCAACCCCTATTCACGTTTTGTTGGTAAATCAAAAAAAGGGTAGTGACAAAGTTTGTGTACTCCCAGTGCCAGCAAATTGGGACTTTATTGCTTTCGCTTGTGGTCCCGCCC TGAAATTTAATGAAAAGAAAGCATTTGTGAGTCCATTATTGCCACTCAGTCCCCCTCCCAGTGAATGTG ATTTCAA CTC CAATTTGGATGATACAAAA GGGGTTTGCGAT TTATTTGATATTCCTGTTATTTCCACATTTACCAA CTAACTATTTATTGTACGCTTTTTATAAAACAATAAGACAT ATATAAATAAGT]
[+] EMBL AI764813 [ ATTCACGTTTTGTTGGTAAATCAAGAAGAGGGTAGTGACAAAGCTCGTGTACTCCCAGTGCCAGCAACTTCGGACTCTATTGCTCTCGCTCGTCGTCCCGCCCTTGAAATCTTATGAAGAGAAAGCATTTGTGAGTCTATTATTNGCACTCAGTCTACCTCTCARTGTATGTGTATTTC A CTATCAATCT ]
[+] EMBL AI740341 [ ACGTTTTGTTGGTAAATCAAGAAGAGGGTAGTGACAAAGCTCGTGTACTCCCAGTGCCAGCAACTTCGGACTCTATTGCTCTCGCTCGTCGTCCCGCCC TGAAATCTAATGAAGAGAAAGCATTTGTGAGTCCATTATTGCCACTCAGTCCACCTCCCAGTGAATGTG ATTTCAA CTA CAATCTGGATGATACAGAA GGTGTTTGCGAT TTATTTGATATTCCTGTTATCTCCACATCTACCAA CTAACTATTTATTGTACGCTTTCTATAAAACAATAAGACAT AT ]
[+] EMBL AI740369 [ ACGTTTTGTTGGTAAATCAAGAAGAGGGTAGTGACAAAGCTCGTGTACTCCCAGTGCCAGCAACTTCGGACTCTATTGCTCTCGCTCGTCGTCCCGCCC TGAAATCTAATGAAGAGAAAGCATTTGTGAGTCCATTATTGCCACTCAGTCCACCTCCCAGTGAATGTG ATTTCAA CTA CAATCTGGATGATACAGAA GGTGTTTGCGAT TTATTTGATATTCCTGTTATCTCCACATCTACCAA CTAACTATTTATTGTACGCTTTCTATAAAACAATAAGACAT AT ]
[+] EMBL AI740352 [ ACGTTTTGTTGGTAAATCAAGAAGAGGGTAGTGACAAAGCTCGTGTACTCCCAGTGCCAGCAACTTCGGACTCTATTGCTCTCGCTCGTCGTCCCGCCC TGAAATCTAATGAAGAGAAAGCATTTGTGAGTCCATTATTGCCACTCAGTCCACCTCCCAGTGAATGTG ATTTCAA CTA CAATCTGGATGATACAGAA GGTGTTTGCGAT TTATTTGATATTCCTGTTATCTCCACATCTACCAA CTAACTATTTATTGTACGCTTTCTATAAAACAATAAGACAT A ]
[+] EMBL AI740357 [ ACGTTTTGTTGGTAAATCAAGAAGAGGGTAGTGACAAAGCTCGTGTACTCCCAGTGCCAGCAACTTCGGACTCTATTGCTCTCGCTCGTCGTCCCGCCC TGAAATCTAATGAAGAGAAAGCATTTGTGAGTCCATTATTGCCACTCAGTCCACCTCCCAGTGAATGTGCATTTCAA CTA CAATCTGGATGATACAGAA GGTGTTTGCGAT TTATTTGATATTCCTGTTATCTCCACATCTACCAA CTAACTATTTATTGTACGCTTTCTATAAAACAATAAGg ]
[-] EMBL CD076880 [ GTTTTGTTGGTAAATCAAGAAGAGGGTAGTGACAAAGCTCGTGTACTCCCAGTGCCAGCAACTTCGGACTCTATTGCTCTCGCTCGTCGTCCCGCCC TGAAATCTAATGAAGAGAAAGCATTTGTGAGTCCATTATTGCCACTCAGTCCACCTCCCAGTGAATGTG ATTTCAA CTA CAATCTGGATGATACAGAA GGTGTTTGCGATCTTATTTGATATTCCTGTTATCTCCACATCTACCAA CTAACTATTTATTGTACGCTTTCTATAAAACAATAAGACAT ATA ]
consensusID : consensus_10890#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 854 fasta sequence
[CTCCAGGCCAGAATTTGGCACGAGGCGCCATGAAAAAAGTTTAGGTCTACTCACGGAAAAGTTTGTTCAGCTTCTTAAAGAGGCTCCAGATGGAATTTTGGACCTTAAAATGGCGGCAGATTTCCTAGCTGTGAGGCAAAAAAGAAGGATCTATGACATTACGAATGTTTTGGAAGGTATAGGTTTGATAGAAAAGCGAACTAAAAACAGTATTCAGTGGAAGGGAGGAAGTGCAGCTACAAATGGACCTGATATTCAAGCTCGTCTGGATGAACTTCAAGCTGAAGTTGAGTATTTAGAAAATTTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAAGAAGATTTAGATAATCTGCAATACGCTTATGTTACTCATCAAGATCTGATTAATATTTTTCAAGATCGTACAATGCTGATAATACGTGCACCACCTGGAACTAAACTGGAAGCACCTGTACCTGAAAATCCTATGGACCAACAACCTGTTCAAACGATTTTCTCATTAAAACGTTCATACAAAGTTCATGTGAAAAGCTTCACAACACCTATTCACGTTTTGTTGGTAAATCAAGAAGAGGGTAGTGACAAAGCTCGTGTACTCCCAGTGCCAGCAACTTCGGACTCTATTGCTCTCGCTCGTCGTCCCGCCCTGAAATCTAATGAAGAGAAAGCATTTGTGAGTCCATTATTGCCACTCAGTCCACCTCCCAGTGAATGTGATTTCAACTACATCTGGATGATACAGAANGGTGTTGCGATTTATTTGATATTCCTGTTATCTCACATCTACCAAACTACTATTATGACGCTTTCTTANNACATAGACA]
[+] EMBL CD081085 [CTCCAGGCCAGAATTTGGCACGAGGCGCCATGAAAAAAGTTTAGGTCTACTCACGGAAAAGTTTGTTCAGCTTCTTAAAGAGGCTCCAGATGGAATTTTGGACCTTAAAATGGCGGCAGATTTCCTAGCTGTGAGGCAAAAAAGAAGGATCTATGACATTACGAATGTTTTGGAAGGTATAGGTTTGATAGAAAAGCGAACTAAAAACAGTATTCAGTGGAAGGGAGGAAGTGCAGCTACAAATGGACCTGATATTCAAGCTCGTCTGGATGAACTTCAAGCTGAAGTTGAGTATTTAGAAAATTTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAAGAAGATTTAGATAATCTGCAATACGCTTATGTTACTCATCAAGATCTGATTAATATTTTTCAAGATCGTACAATGCTGATAATACGTGCACCACCTGGAACTAAACTGGAAGCACCTGTACCTGAAAATCCTATGGACCAACAACCTGTTCAAACGATTTTCTCATTAAAACGTTCATACAAAGTTCATGTGAAAAGCTTCACAACACCTATTCACGTTTTGTTGGTAAATCAAGAAGAGGGTAGTGACAAAGCTCGTGTACTCCCAGTGCCAGCAACTTCGGACTCTATTGCTCTCGCTCGTCGTCCCGCCCTGAAATCTAATGAAGAGAAAGCATTTGTGAGTCCATTATTGCCACTCAGTCCACCTCCCAGTGAATGTGATTTCAACTACATCTGGATGATACAGAANGGTGTTGCGATTTATTTGATATTCCTGTTATCTCACATCTACCAAACTACTATTATGACGCTTTCTTANNACATAGACA]
[+] EMBL CD095988 [ CTTAAAATGGCGGCAGATTTCCTAGCTGTGAGGCAAAAAGGAAGGATCTATGACATTACGAATGTTTTGGAAGGTATAGGTTTGATAGAAAAGCGAACTAAAAACAGTATTCAGTGGAAGGGAGGAAGTGCAGCTACAAATGGACCTGATATTCAAGCTCGTCTGGATGAACTTCAAGCTGAGGTTGAGTATTTAGAAAATTTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAAGAAGATTTAGATAATCTGCAATACGCTTATGTTACTCATCAAGATCTGATTAATATTTTTCAAGATCGTACAATGCTGATAATACGTGCACCACCTGGAACTAAACTGGAAGCACCTGTACCTGAAAATCCTATGGACCAACAACCTGTTCAAACGATTTTCTCATTAAAACGTTCATACAAAGTTCATGTGAAAAGCTTCACAACACCTATTCACGTTTTGTTGGTAAATCAAGAAGAGGGTAGTGACANAGCTCGTGTACTCCCAGTGCCAGCAACTTCGGACTCTATTG ]
[+] EMBL CD096066 [ CTTAAAATGGCGGCAGATTTCCTAGCTGTGAGGCAAAAAAGAAGGATCTATGACATTACGAATGTTTTGGAAGGTATAGGTTTGATAGAAAAGCGAACTAAAAACAGTATTCAGTGGAAGGGAGGAAGTGCAGCTACAAATGGACCTGATATTCAAGCTCGTCTGGATGAACTTCAAGCTGAAGTTGAGTATTTAGAAAATTTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAAGAAGATTTAGATAATCTGCAATACGCTTATGTTACTCATCAAGATCTGATTAATATTTTTCAAGATCGTACAATGCTGATAATACGTGCACCACCTGGAACTAAACTGGAAGCACCTGTACCTGAAAATCCTATGGACCAACAACCTGTTCAAACGATTTTCTCATTAAAACGTTCATACAAAGTTCATGTGAAAAGCTTCACAACACCTATTCACGTTTTGTTGGTAAATCAAGAAGAGGGTAGTGACAAAGCTCGTGTACTCCCAGTGCCAGCAACTTCGGACTCTATTG ]
[-] EMBL CD180463 [ gGTGCAGCTACAAATGGACCTGATACTCTAGCTCGTCTGGATGAACTTCAAGCTGAAGTTGAGTATTTAGAAAATTTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAAGAAGATTTAGATAATCTGCAATACGCTTATGTTACTCATCAAGATCTGATTAATATTTTTCAAGATCGTACAATGCTGATAATACGTGCACCACCTGGAACTAAACTGGAAGCACCTGTACCTGAAAATCCTATGGACCAACAACCTGTTCAAACGATTTTCTCATTAAAACGTTCATACAAAGTTCAAGTGAAAAGCTTCACAACACCTATTCACGTTTTGTTGGTAAATCAAGAAGAGGGTAGTGACAAAGCTCGTGTACTCCCAGTGCCAGCAACTTCGGACTCTATTGC ]
[+] EMBL CD095826 [ ACAAATGGACCTGATATTCAAGCTCGTCTGGATGAACTTCAAGCTGAAGTTGAGTATTTAGAAAATTTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAAGAAGATTTAGATAATCTGCAATACGCTTATGTTACTCATCAAGATCTGATTAATATTTTTCAAGATCGTACAATGCTGATAATACGTGCACCACCTGGAACTAAACTGGAAGCACCTGTACCTGAAAATCCTATGGACCAACAACCTGTTCAAACGATTTTCTCATTAAAACGTTCATACAAAGTTCATGTGAAAAGCTTCACAACACCTATTCACGTTTTGTTGGTAAATCAAGAAGAGGGTAGTGACAAAGCTCGTGTACTCCCAGTGCCAGCAACTTCGGACTCTATTG ]
[-] EMBL CD141978 [ GCTGAAGTTGAGTATTTAGAAAATTTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAAGAAGATTTAGATAATCTGCAATACGCTTATGTTACTCATCAAGATCTGATTAATATTTTTCAAGATCGTACAATGCTGATAATACGTGCACCACCTGGAACTAAACTGGAAGCACCTGTACCTGAAAATCCTATGGACCAACAACCTGTTCAAACGATTTTCTCATTAAAACGTTCATACAAAGTTCATGTGAAAAGCTTCACAACACCTATTCACGTTTTGTTGGTAAATCAAGAAGAGGGTAGTGACAAAGC ]
consensusID : consensus_10890#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 673 fasta sequence
[AANAATTCGGCACGAGGGCCGAATCAGGNACTTATGTTTAATGAGTTCCCACTAGATCAACATACTCTTCGAGATCTCAACCGCCATGAAAAAAGTTTAGGTCTACTCACGGAAAAGTTTGTTCAGCTTCTTAAAGAGGCTCCAGATGGAATTTTGGACCTTAAAATGGCGGCAGATTTCCTAGCTGTGAGGCAAAAAAGAAGGATCTATGACATTACGAATGTTTTGGAAGGTATAGGTTTGATAGAAAAGCGAACTAAAAACAGTATTCAGTGGAAGGGAGGAAGTGCAGCTACAAATGGACCTGATATTCAAGCTCGTCTGGATGAACTTCAAGCTGAAGTTGAGTATTTAGAAAATTTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAAGAAGATTTAGATAATCTGCAATACGCTTATGTTACTCATCAAGATCTGATTAATATTTTTCAAGATCGTACAATGCTGATAATACGTGCACCACCTGGAACTAAACTGGAAGCACCTGTACCTGAAAATCCTATGGACCAACAACCTGTTCAAACGATTTTCTCATTAAAACGTTCATACCAAGTTCATGTGAAAAGCTTCACAACACCTATTCACGTTNTGTTGGTAAATCAAGAAGAGGGTAGTGACAAAG]
[+] EMBL CD083138 [AANAATTCGGCACGAGGGCCGAATCAGGNACTTATGTTTAATGAGTTCCCACTAGATCAACATACTCTTCGAGATCTCAACCGCCATGAAAAAAGTTTAGGTCTACTCACGGAAAAGTTTGTTCAGCTTCTTAAAGAGGCTCCAGATGGAATTTTGGACCTTAAAATGGCGGCAGATTTCCTAGCTGTGAGGCAAAAAAGAAGGATCTATGACATTACGAATGTTTTGGAAGGTATAGGTTTGATAGAAAAGCGAACTAAAAACAGTATTCAGTGGAAGGGAGGAAGTGCAGCTACAAATGGACCTGATATTCAAGCTCGTCTGGATGAACTTCAAGCTGAAGTTGAGTATTTAGAAAATTTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAAGAAGATTTAGATAATCTGCAATACGCTTATGTTACTCATCAAGATCTGATTAATATTTTTCAAGATCGTACAATGCTGATAATACGTGCACCACCTGGAACTAAACTGGAAGCACCTGTACCTGAAAATCCTATGGACCAACAACCTGTTCAAACGATTTTCTCATTAAAACGTTCATACCAAGTTCATGTGAAAAGCTTCACAACACCTATTCACGTTNTGTTGGTAAATCAAGAAGAGGGTAGTGACAAAG]
[+] EMBL CD082843 [ TGTTTAATGAGTTCCCACTAGATCAACATACTCTTCGAGATCTCAACCGCCATGAAAAAAGTTTAGGTCTACTCACGGAAAAGTTTGTTCAGCTTCTTAAAGAGGCTCCAGATGGAATTTTGGACCTTAAAATGGCGGCAGATTTCCTAGCTGTGAGGCAAAAAAGAAGGATCTATGACATTACGAATGTTTTGGAAGGTATAGGTTTGATAGAAAAGCGAACTAAAAACAGTATTCAGTGGAAGGGAGGAAGTGCAGCTACAAATGGACCTGATATTCAAGCTCGTCTGGATGAACTTCAAGCTGAAGTTGAGTATTTAGAAAATTTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAAGAAGATTTAGATAATCTGCAATACGCTTATGTTACTCATCAAGATCTGATTAATATTTTTCAAGATCGTACAATGCTGATAATACGTGCACCACCTGGAACTAAACTGGAAGCACCTGTACCTGAAAATCCTATGGACCAACAACCTGTTCAAACGATTNTCTCATTAAAACGTTCATACAAAGTTCATGTGAAAAGCTTCACAACACCTATTCACGTTNTGTTGGTAAATCAAGAAGAGG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10890#0 -TCGCTACAATATGTAT-CCGAATCAGGGACTTATGTTTAATGAGTTCCCACTAGATCAA 58
consensus_10890#2 AANAATTCGGCACGAGGGCCGAATCAGGNACTTATGTTTAATGAGTTCCCACTAGATCAA 60
consensus_10890#1 -------------------------------------------------CTCCAGGCCAG 11
* * ** **
consensus_10890#0 CATACTCTTCGAGATCTCAACCGCCATGAAAAAAGTTTAGGTCTACTCACGGAAAAGTTT 118
consensus_10890#2 CATACTCTTCGAGATCTCAACCGCCATGAAAAAAGTTTAGGTCTACTCACGGAAAAGTTT 120
consensus_10890#1 AATTTGGCACGAGG-------CGCCATGAAAAAAGTTTAGGTCTACTCACGGAAAAGTTT 64
** **** ***************************************
consensus_10890#0 GTTCAGCTTCTTAAAGAGGCTCCAGATGGAATTTTGGACCTTAAAATGGCGGCAGATTTC 178
consensus_10890#2 GTTCAGCTTCTTAAAGAGGCTCCAGATGGAATTTTGGACCTTAAAATGGCGGCAGATTTC 180
consensus_10890#1 GTTCAGCTTCTTAAAGAGGCTCCAGATGGAATTTTGGACCTTAAAATGGCGGCAGATTTC 124
************************************************************
consensus_10890#0 CTAGCTGTGAGGCAAAAAAGAAGGATCTATGACATTACGAATGTTTTGGAAGGTATAGGT 238
consensus_10890#2 CTAGCTGTGAGGCAAAAAAGAAGGATCTATGACATTACGAATGTTTTGGAAGGTATAGGT 240
consensus_10890#1 CTAGCTGTGAGGCAAAAAAGAAGGATCTATGACATTACGAATGTTTTGGAAGGTATAGGT 184
************************************************************
consensus_10890#0 TTGATAGAAAAGCGAACTAAAAACAGTATTCAGTGGAAGGGAGGAAGTGCAGCTACAAAT 298
consensus_10890#2 TTGATAGAAAAGCGAACTAAAAACAGTATTCAGTGGAAGGGAGGAAGTGCAGCTACAAAT 300
consensus_10890#1 TTGATAGAAAAGCGAACTAAAAACAGTATTCAGTGGAAGGGAGGAAGTGCAGCTACAAAT 244
************************************************************
consensus_10890#0 GGACCTGATATTCAAGCTCGTCTGGATGAACTTCAAGCTGAAGTTGAGTATTTAGAAAAT 358
consensus_10890#2 GGACCTGATATTCAAGCTCGTCTGGATGAACTTCAAGCTGAAGTTGAGTATTTAGAAAAT 360
consensus_10890#1 GGACCTGATATTCAAGCTCGTCTGGATGAACTTCAAGCTGAAGTTGAGTATTTAGAAAAT 304
************************************************************
consensus_10890#0 TTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAA 418
consensus_10890#2 TTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAA 420
consensus_10890#1 TTAGAAAAAAAAGTTGATGAACATAGAGGAAAAGTTTTACAGTCACTGAAGAATGTTCAA 364
************************************************************
consensus_10890#0 GAAGATTTAGATAATCTGCAATACGCTTATGTTACTCATCAAGATCTGATTAATATTTTT 478
consensus_10890#2 GAAGATTTAGATAATCTGCAATACGCTTATGTTACTCATCAAGATCTGATTAATATTTTT 480
consensus_10890#1 GAAGATTTAGATAATCTGCAATACGCTTATGTTACTCATCAAGATCTGATTAATATTTTT 424
************************************************************
consensus_10890#0 CAAGATCGTACAATGCTGATAATACGTGCACCACCTGGAACTAAACTGGAAGCACCTGTA 538
consensus_10890#2 CAAGATCGTACAATGCTGATAATACGTGCACCACCTGGAACTAAACTGGAAGCACCTGTA 540
consensus_10890#1 CAAGATCGTACAATGCTGATAATACGTGCACCACCTGGAACTAAACTGGAAGCACCTGTA 484
************************************************************
consensus_10890#0 CCTGAAAATCCTATGGACCAACAACCTGTTCAAACGATTTTCTCATTAAAACGTTCATAC 598
consensus_10890#2 CCTGAAAATCCTATGGACCAACAACCTGTTCAAACGATTTTCTCATTAAAACGTTCATAC 600
consensus_10890#1 CCTGAAAATCCTATGGACCAACAACCTGTTCAAACGATTTTCTCATTAAAACGTTCATAC 544
************************************************************
consensus_10890#0 AAAGTTCATGTGAAAAGCTTCACAACACCTATTCACGTTTTGTTGGTAAATCAAGAAGAG 658
consensus_10890#2 CAAGTTCATGTGAAAAGCTTCACAACACCTATTCACGTTNTGTTGGTAAATCAAGAAGAG 660
consensus_10890#1 AAAGTTCATGTGAAAAGCTTCACAACACCTATTCACGTTTTGTTGGTAAATCAAGAAGAG 604
************************************** ********************
consensus_10890#0 GGTAGTGACAAAGCTCGTGTACTCCCAGTGCCAGCAACTTCGGACTCTATTGCTCTCGCT 718
consensus_10890#2 GGTAGTGACAAAG----------------------------------------------- 673
consensus_10890#1 GGTAGTGACAAAGCTCGTGTACTCCCAGTGCCAGCAACTTCGGACTCTATTGCTCTCGCT 664
*************
consensus_10890#0 CGTCGTCCCGCCCTGAAATCTAATGAAGAGAAAGCATTTGTGAGTCCATTATTGCCACTC 778
consensus_10890#2 ------------------------------------------------------------
consensus_10890#1 CGTCGTCCCGCCCTGAAATCTAATGAAGAGAAAGCATTTGTGAGTCCATTATTGCCACTC 724
consensus_10890#0 AGTCCACCTCCCAGTGAATGTGATTTCAACTACAATCTGGATGATACAGAAGGTGTTTGC 838
consensus_10890#2 ------------------------------------------------------------
consensus_10890#1 AGTCCACCTCCCAGTGAATGTGATTTCAACTACATCTGGATGATACAGAANGGTGTTGCG 784
consensus_10890#0 GATTTATTTGATATTCCTGTTATCTCCACATCTACCAACTAACTATTTATTGTACGCTTT 898
consensus_10890#2 ------------------------------------------------------------
consensus_10890#1 ATTTATTTGATATTCCTGTTATCTCACATCTACCAAACTACTATTATGACGCTTTCTTAN 844
consensus_10890#0 CTATAAAACAATAAGACATATATAATAAGT 928
consensus_10890#2 ------------------------------
consensus_10890#1 NACATAGACA-------------------- 854
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||