These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10907#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1419 fasta sequence [TTGTAATTTTTTATCCGTATTTTTATCACTGCAGGAAGCAGATGGATCAGTAGAAGATAACTGTTTATTACAATCAGATGTAACATCATCATTATGCTCAAGTTGTTCACAAGAAATAATAGGCAAATCAGTTGACTTTGAAACATCATGAG-CTGTGGAACTGACTGATGTGAAACTGAATAATTCATATGTTTATTGTTCTCTTCAACAACTTCACATAATGTTCGCAAAAATGCCAACATTGCAATTATACGACCCCAGTTAATACGCTCAAGAAATAATTCTTCTAGAACACTATGAAATTGACATCGTGCCATTTCTAAACGAGTTTGAAGTGAATCATCGCTCACATGACTAGCAGCACCGCTGGCATCACCATCACCAATCCTACTATCACTCTTTACACTTGTGTTGGTATCACGCACATTAGTAACATTATCATTAACACTAATCATTGTCGTTTTGTTTGTATCTTCTGTACAACTTTGATCATCTATATTATGATTAATATTATCACTATTGGAATTACTATTTAAACGCGCTACATCTTCTAACAAACTGCCCAATTTATCACGATATCTAGACTCAAAATGGTCAGCGAGATTTCTGGCGCATAGAATTAATCGTGCAGATATAAATGTTGACGGAACTGACTGATGAGATTGATGATATACAAGAGAAGTGGATGGTAGTGTGGTGGTATTAGTAGTAGCAGATGGTTCATTACTTGTAGGTTGAATTTCATTTTGAGGCTGAGATGAACTATTCGGTTTGAAACGTTTCACTGCGCATACTTCCTGATCAGATGATGATGAACGAGTAAAATCTGTATTATTTGTACAACTAATTGTTGGTGTAAGAGTAGTAGTAGCAGTAGTAAGGGTTTTGGGGGTTGTAGAAGAATATGACTGGGAAATACTTGAAGATAAATCCGACTTAATAGTATTTCTTTGCCAATATTCTAAAGGTGAACGCCAGTCTGGGGATAGACGTGAGTCAAGTAAATGTGAAAGGAAATTTATTGTTCTCAAGGTAATTGGATTTTGAAATAGTACATTATAATTGTAGATACTATCATGATTATTATTATCGTCGTTAAATTGTCGTAAAGAGGAAGAGAGAGAAGGAGAAGAGGTTGAGGAGGAGGTATTTTGTTGATTATGATCAGTTGATTGATTGAAATATTTGAATGATTGGTTAGGTGAATGTCAGTAGCTGATTATTGNAGCATCATATATCATTATAGATTATCAGAGACATATCATGGGCGCAGATACTAGTAGAAGTGGTCGATGGTGACAGGAAATCNACACACCATGTCAGATAGCCATTATTGAGCTAGGGATTGATTGGAACAATTTGATCGTGGTAGGGACTTTCAGCGTAATTGCTGACCGCAAAAAGATGGCGAGAAGAATT] [+] EMBL CD195936 [TTGTAATTTTTTATCCGTATTTTTATCACTGCAGGAAGCAGATGGATCAGTAGAAGATAACTGTTTATTACAATCAGATGTAACATCATCATTATGCTCAAGTTGTTCACAAGAAATAATAGGCAAATCAGTTGACTTTGAAACATCATGAGACTGTGGAACTGACTGATGTGAAACTGAATAATTCATATGTTTATTGTTCTCTTCAACAACTTCACATAATGTTCGCAAAAATGCCAACATTGCAATTATACGACCCCAGGTAATACGCTCAAGAAATAATTCTTCTAGAACACTATGAAATTGACATCGAGCCATTTCTAca ] [+] EMBL CD113775 [ t ggtgccAAGTGAGAGATGTGAAACTGAATAATCCATATGTTTATTGTTCTCTTCAACAACTTCACATAATGTTCGCAAAAATGCCAACATTGCAATTATACGACCCCAGTTAATACGCTCAAGAAATAATTCTTCTAGAACACTATGAAATTGACATCGTGCCATTTCTAAACGAGTTTGAAGTGAATCATCGCTCACATGACTAGCAGCACCGCTGGCATCACCATCACCAATCCTACTATCACTCTTTACACTTGTGTTGGTATCACGCACATTAGTAACATTACCATTAACACTAATCATTGTCGTTTCGTTTGTATCTTCTGTACAACTTTGATCATCTATATTATGATTAATATTATCACTATTGGAATTACTATTTAAACGCGCTACATCTTCTAACAAACTGCCCAATTTATCACGATATCTAGACTCAAAATGGTCAGCGAGATTTCTGGCGCATAGAATTAATCGTGCCGATATCAATGTTGACGGAACTGA ] [-] EMBL CD195683 [ AGTTAATACGCTCAAGAAATAATTCTTCTAGAACACTATGAAATTGACATCGTGCCATTTCTAAACGAGTTTGAAGTGAATCATCGCTCACATGACTAGCAGCACCGCTGGCATCACCATCACCAATCCTACTATCACTCTTTACACTTGTGTTGGTATCACGCACATTAGTAACATTATCATTAACACTAATCATTGTCGTTTTGTTTGTATCTTCTGTACAACTTTGATCATCTATATTATGATTAATA ] [-] EMBL CD124317 [ CAAGAAATATTTCTTCTAGACNACTATGAAATTGACATCGTGCCATTTCTAAACGAGTTTGAAGTGAATCATCGCTCACATGACTAGCAGCACCGCTGGCATCACCATCACCAATCCTACTATCACTCTTTACACTTGTGTTGGTATCACGCACATTAGTAACATTATCATTAACACTAATCATTGTCGTTTTGTTTGTATCTTCTGTACAACTTTGATCATCTATATTATGATTAATATTATCACTATTGGAATTACTATTTAAACGCGCTACATCTTCTAACAAACTGCCCAATTTATCACGATATCTAGACTCAAAATGGTCAGCGAGATTTCTGGCGCATAGAATTAATCGTGCAGATATAAATGTTGACGGAACTGACTGATGAGATTGATGATATACAAGAGAAGTGGATGGTAGTGTGGTGGTATTAGTAGTAGCAGATGGTTCATTACTTGTAGGTTGAATTTCATTTTGAGGCTGAGATGAACTACTCGGTTTGAAACGTTTCACTGCGCATACTTCCTGATCAGATGATGATGAACGAGTAAAATCTGTATTATTTGTACAACTAATTGTTGGTGTAAGAGTAGTAGTAGCAGTAGTAAGGGTTTTGGGGGTTGTAGAAGAATATGACTGGGAAATACTTGAAGATAAATCCGACTTAATAGTATTTCTTTGCCAATATTCTAAAGGTG ] [-] EMBL CD195617 [ ACATCGTGCCATTTCTAAACGAGTTTGAAGTGAATCATCGCTCACATGACTAGCAGCACCGCTGGCATCACCATCACCAATCCTACTATCACTCTTTACACTTGTGTTGGTATCACGCACATTAGTAACATTATCATTAACACTAATCATTGTCGTTTTGTTTGTATCTTCTGTACAACTTTGATCATCTATATTATGATTAATA ] [+] EMBL CD165831 [ CATCACCAATCCTACTATCACTCTTTACACTTGTGTTGGTATCACGCACATTAGTAACATTATCATTAACACTAATCATTGTCGTTTAGTTTGTATCTTCTGTACAACTTTGATCATCTATATTATGATTAATATTATCACTATTGGAATTACTATTTAAACGCGCTACATCTTCTAACAAACTGCCCAATTTATCACGATACCTAGACTCAAAATGGTCAGCGAGATTTCTGGCGCATAGAATTAATCGTGCAGATATAAATGTTGACGGAACTGACTGATGAGATTGATGATATACAAGAGAAGTGGATGGTAGTGTGGTGGTATTAGTAGTAGCAGATGGTTCATTACTTGTAGGTTGAATTTCATTTCGAGGCTGAGATGAACTATTCGGTTTGAAACGTTTCACTGCGCATACTTCCTGATCAGATGATGATGAACGAGTAAAATCTGTATTAT ] [-] EMBL CD195816 [ CGCACATTAGTAACATTATCATTAACACTAATCATTGTCGTTTTGTTTGTATCTTCCGTACAACTTTGATCATCTATATTATGATTAATA ] [+] EMBL CD144694 [ GCAGATGGTTCATTACTTGTAGGTTGAATTTCATTTTGAGGCTGAGATGAACTATTCGGTTTGAAACGTTTCACTGCGCATACTTCCTGATCAGATGATGATGAACGAGTAAAATCTGTATTATTTGTACAACTAATTGTTGGTGTAAGAGTAGTAGTAGCAGTAGTAAGGGTTTTGGGGGTTGTAGAAGAATATGACTGGGAAATACTTGAAGATAAATCCGACTTAATAGTATTTCTTTGCCAATATTCTAAAGGTGAACGCCAGTCTGGGGATAGACGTGAGTCAAGTAAATGTGAAAGGAAATTTATTGTTCTCAAGGTAATTGGATTTTGAAATAGTACATTATAATTGTAGATACTATCATGATTATTATTATCGTCGTTAAATTGTCGTAAAGAGGAAGAGAGAGAAGGAGAAGAGGTTGAGGAGGAGGTATTTTGTTGATTATGATCAGTTGATTGATTGAAATATTTGAATGATTGGTTAGGTGAATGTCAGTAGCTGATTATTGNAGCATCATATATCATTATAGATTATCAGAGACATATCATGGGCGCAGATACTAGTAGAAGTGGTCGATGGTGACAGGAAATCNACACACCATGTCAGATAGCCATTATTGAGCTAGGGATTGATTGGAACAATTTGATCGTGGTAGGGACTTTCAGCGTAATTGCTGACCGCAAAAAGATGGCGAGAAGAATT] consensusID : consensus_10907#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1065 fasta sequence [ATTCTGCTTATTTACATATGGGTGATTCTCTGTTTCACAATTCGTCTGCGGCTCCAGATGATGAATATGATTATTTGATTAAACTTTTAGCCCTTGGAGATAGCAATGTTGGGAAAACAAGCTTATTATATCAGTATACTGATAATATTTTCAATCCACGATTTACAACAACTGTTGGTGTAGATTTTCGTCAAAAACGTTTAGTTCGGGAAAGTCGTGATTCTGAAGGTCTTTTAGGACCTAAACAACGCTTGCATTTACAGTTATGGGATACGGCTGGACAAGAACGTTATCGAAGTTTATGCACTGTGTTTTTACGTGATGCAATGGGATTTTTATTGGTATTCGATTTGACCAATGAGAATAGTTTTAAAAATTGTCATGCTTGGATGAATTTATTATGTGATAATGCTTATTGTGATCGTCCAGATGTAGTTCTTGTTGGGAATAAATTTGATCTAACCTCTGAACGTCAAGTATCCATGTCCGCTGCTAAAGCAATGGCTTGTGATCTCAATGTACCTTATATTGAAACAAGTGCAGCAACTGGTTATCAAGTTAATGATGCTGTGGATCGTTTATTAGATTTAGTAATGACAAGAATTGAAGCCTCAGTAACTAAAGCACGTATCCATGGTAATACAGAAGGTACAGCAAATTTGAAAAAACCTACTACTAAATCAAATTGTAATTGTTAATAATTTATGTTTATTTGAATGGATTTTGATGATGACTTATCATCATGTTCTATATGATTTCAAATTGTACTATTTCTGTTGCATCAATTTCTACTGCATAAACTTGTCCTGTCAACATCTTGTTATCCTGTTGTGTTGTATTCTCTATGTATATGTGTGTACGCTGTGCTATCTCCCCATGTTTGTGAAGATGAACTAACTGATCAACTATAGCCTAATTGTGCCAACAACATACTTTTAATTGCTTTACTCTGTTCCTATTAATGATTGTGATTCGGAGGATGGAGAAAGAGAGGGTATCCATTCGATGTGTTATTATCCAATTTATGGTAACCATAATTCTGTATGTGTTTGTTTGTGTGTGTGN] [+] EMBL AI976951 [ATTCTGCTTATTTACATATGGGTGATTCTCTGTTTCACAATTCGTCTGCGGCTCCAGATGATGAATATGATTATTTGATTAAACTTTTAGCCCTTGGAGATAGCAATGTTGGGAAAACAAGCTTATTATATCAGTATACTGATAATATTTTCAATCCACGATTTACAACAACTGTTGGTGTAGATTTTCGTCAAAAACGTTTAGTTCGGGAAAGTCGTGATTCTGAAGGTCTTTTAGGACCTAAACAACGCTTGCATTTACAGTTATGGGATACGGCTGGACAAGAACGTTATCGAAGTTTATGCACTGTGTTTTTACGTGATGCAATGGGATTTTTATTGGTATTCGATTTGACCAATGAGAATAGTTNTAAAAATTGTCATGCTTGGATGAANTTATTATGTGATAATGCTTATTGTGATCGTCCAGATGTAGTTCTTGTTGGGAATAAATTTGATCTAACCTCTGAACGTCAAGTATCCATGTCCGCTGCTAAAGCAATGGCTTGTGATCTCAATGTACCTTATATTGA ] [+] EMBL CD193042 [ TTGGTGTAGATTTTCGTCAAAAACGTTTAGTTCGGGAAAGTCGTGATTCTGAAGGTCTTTTAGGACCTAAACAACGCTTGCATTTACAGTTATGGGATACGGCTGGACAAGAACGTTATCGAAGTTTATGCACTGTGTTTTTACGTGATGCAATGGGATTTTTATTGGTATTCGATTTGACCAATGAGAATAGTTTTAAAAATTGTCATGCTTGGATGAATTTATTATGTGATAATGCTTATTGTGATCGTCCAGATGTAGTTCTTGTTGGGAATAAATTTGATCTAACCTCTGAACG ] [+] EMBL CD128385 [ ACTTTATCGAAG TTATG ACTGTGTTTTTACGTGATGCAATGGGATTTTTATTGGTATTCGATTTGACCAATGAGAATAGTTTTAAAAATTGTCATGCTTGGATGAATTTATTATGTGATAATGCTTATTGTGATCGTCCAGATGTAGTTCTTGTTGGGAATAAATTTGATCTAACCTCTGAACGTCAAGTATCCATGTCCGCTGCTAAAGCAATGGCTCGTGATCTCAATGTACCTTATATTGAAACAAGTGCAGCAACTGGTTATCAAGTTAATGATGCTGTGGATCGTTTATTAGATTTAGTAATGACAAGAATTGAAGC ] [+] EMBL CD080215 [ AAAATTGTCATGCTTGGATGAATTTATTATGTGATAATGCTTATTGTGATCGTCCAGATGTAGTTCTTGTTGGGAATAAATTTGATCTAACCTCTGAACGTCAAGTATCCATGTCCGCTGCTAAAGCAATGGCTTGTGATCTCAATGTACCTTATATTGAAACAAGTGCAGCAACTGGTTATCAAGTTAATGATGCTGTGGATCGTTTATTAGATTTAGTAATGACAAGAATTGAAGCCTCAGTAACTAAAGCACGTATCCATGGTAATACAGAAGGTACAGCAAATTTGAAAAAACCTACTACTAAATCAAATTGTAATTGTTAATAATTTATGTTTATTTGAATGGATTTTGATGATGACTTATCATCATGTTCTATATGATTTCAAATTGTACTATTTCTGTTGCATCAATTTCTACTGCATAAACTTGTCCTGTCAACATCTTGTTATCCTGTTGTGTTGTATTCTCTATGTATATGTGTGTACGCTGTGCTATCTCCCCATGTTTGTGAAGATGAACTAACTGATCAACTATAGCCTAATTGTGCCAACAACATACTTTTAATTGCTTTACTCTGTTCCTATTAATGATTGTGATTCGGAGGATGGAGAAAGAGAGGGTATCCATTCGATGTGTTATTATCCAATTTATGGTAACCATAATTCTGTATGTGTTTGTTTGTGTGTGTGN] consensusID : consensus_10907#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 821 fasta sequence [AGCCGTCATCAAGAACGTACACTGAACCATGCTGATCATCAATTAATTACTAATATTGGGAATCAATTATAGTTGTCAAGTATTGAATAACACACAGCACAAACATAAAGGAGGAGGGGTACCGAAGAACCAGGAGGAAAGCAAAAAGGAAAAAGACAAGACAAAAAAGGAAACCAAGTGAAAACATTTCCAATAGCAAAGTGAATAATTTTCAATTAAGTAGAAAAATATACATCACCTATGATAATCACGATAACAATCATAAAGTTATTTAAGTAGT-ATTAGTAGCAGTA-GTAGGTAAACAAAAATACGAAAGACAAAATACATTCGATGTAACACAAATACTTGAAAATGGAATGTTTATTGAGATATTTTCACTGAGATTCATATAATGTATGG-AATGAATGAAGCAAAGCAAAGATACTTGTGATATACACTAACG-ACATTGAGTAAACATACATATCACATATACAACAGGGAAAAGTCCTGCGACAAAAAT--ACATTACATGAGCACAGAGTTGATATTCTTGTATCGTGATTTTACAGGACATGGTTATGCTCTCTCTCTGTCTGTTTTTTCTTGGTCACGTACATAAACAAATGTCA-TGGTATAATAGAGGTCAATGTTCTAGAAATGTTTATTGGTAGAGTAGTCGTACAATATAAACGAAAGAGGTAATTTGACCACAACACACACACACAAACAAACACATACAGAATTATGGTTACCATAAATTGGATAATAACACATCGAATGGATACCCTCTCTTTCTCCATCCTCCGAATCACAATCATTAATAGGAACAGAGTAGTGATGTGTA] [+] EMBL CD113818 [AGCCGTCATCAAGAACGTACACTGAACCATGCTGATCATCAATTAATTACTAATATTGGGAATCAATTATAGTTGTCAAGTATTGAATAACACACAGCACAAACATAAAGGAGGAGGGGTACCGAAGAACCAGGAGGAAAGCAAAAAGGAAAAAGACAAGACAAAAAAGGAAACCAAGTGAAAACATTTCCAATAGCAAAGTGAATAATTTTCAATTAAGTAGAAAAATATACATCACCTATGATAATCACGATAACAATCATAAAGTTATTTAAGTAGT ATTAGTAGCAGTA GTAGGTAAACAAAAATACGAAAGACAAAATACATTCGATGTAACACAAATACTTGAAAATGGAATGTTTATTGAGATATTTTCACTGAGATTCATATAATGTATGG AATGAATGAAGCAAAGCAAAGATACTTGTGATATACACTAACG ACATTGAGTAAACATACATATCACATATACAACAGGGAAAAGTCCTGCGACAAAAAT ACATTACATGAGCACAGAGTTGATATTCTTGT ] [-] EMBL BE431264 [ AAAATATCCATCACATTTGAT ATCACGATAACAATCAT AAGTTA TTAAGTAGTAATTAGTAGCAGTACGTAGGTAAAC AAAATACG AAGACAAAATACATTCGATGTAACAC AATACTTGAAAATGGAATGATTAATGAGATAATTTCACTGAGATACATATAATGTATGGAAATGAATGAAGCAAAGCAAAGATACTTGTGATATACACTAACGAACATTGAGTAAACATACATATCACATATACAACAGGGAAAAGTCCTGCGACAAAAATCGACATTACATGAGCACAGAGTTGATATTCTnttttt ] [-] EMBL CD072129 [ TAGTAGCAGTA GTAGGTAAACAAAAATACGAAAGACAAAATACATTCGATGTAACACAAATACTTGAAAATGGAATGTTTATTGAGATATTTTCACTGAGATTCATATAATGTATGG AATGAATGAAGCAAAGCAAAGACACTTGTGATATACACTAACG ACATAGAGTAAACATACATATCACATATACAACAGGGAAAAGTCCTGCGACAAAAAT ACATTACATGAGCACAGAGTTGATATTCTTGTATCGTGATTTTACAGGACATGGTTATGCTCTCTCTCTGTCTGT ] [+] EMBL CD167148 [ tacatCGAAAGACAAAATACATTCGATGTAACACAAATACTTGAAAATGGAATGTATATTGAGATATTTTCACTGAGATTCATATAATGTATGG AATGAATGAAGCAAAGCAAAGATACTTGTGATATACACTAACG ACATTGAGTAAACATACATATCACATATACAACAGGGAAAAGTCCTGCGACAAAAAT AC ] [-] EMBL CD134423 [ ACAAAATACATTCGATGTAACACAAATACTTGAAAATGGAATGTTTATTGAGATATTTTCACTGAGATTCATATAATGTATGG AATGAATGAAGCAAAGCAAAGATACTTGTGATATACACTAACG ACATTGAGTAAACATACATATCACATATACAACAGGGAAAAGTCCTGCGACAAAAAT ACATTACATGAGCACAGAGTTGATATTCTTGTATCGTGATTTTACAGGACATGGTTATGCTCTCTCTCTGTCTGTTTTTTCTTGGTCACGTACATAAACAAATGTCAGTGGTATAATAGAGGTCAATGTTCTAGAAATGTTTATTGGTAGAGTAGTCGTACAATATAAACGAAAGAGGTAATTTGACCACAACACACACACACAAACAAACACATACAGAATTATGGTTACCATAAATTGGATAATAACACATCGAATGGATACCCTCTCTTTCTCCATCCTCCGAATCACAATCATTAATAGGAACAGAGTAGTGATGTGTA] [+] EMBL CD178019 [ TTGTGATATACACTAACG ACATTGAGTAAACATACATATCACATATACAACAGGGAAAAGTCCTGCGACAAAAAT ACATTACATGAGCACAGAGTTGATATTCTTGTATCGTGATTTTACAGGACATGGTTATGCTCTCTCTCTGTCTGTTTTTTCTTGGTCACGTACATAAACAAATGTCA TGGTATAATAGAGGTCAATGTTCTAGAAATGTTTATTGGTAGAGTAGTCGTACAATATAAACGAAAGAGGTAATTTGACCACAACACACACACACGAACAAACACATACAGAATTATGGTTACCATAAATTGGATAATAACACATCGAATG ] consensusID : consensus_10907#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 729 fasta sequence [CATTAGTAACATTATCATTAACACTAATCATCGTCGTTTTGTTTGTATCTTCTGTACAACTTTGATCATTATTTAAACGCGCTACATCTTCTAACAAACTGCCCAATTTATCACGATATCTAGACTCAAAATGGTCACGCGAGATTTCTGGCGCATAGAATTAATCGTGCAGATATAAATGTTGACGGAACTGACTGATGAGATTGATGAAATACAACGAGAAGTGGATGGTAGTGTGGTGGTATTAGTAGTAGCAGATGGTTCATTACTTGTGGGTTGAATTTCATTTTGAGGCTGAGATGAACTATTCGGTTTGACACGTTTCACTGCGCATACTTCCTGATCAGATGATGATGAACGAGTAAAATCTGTATTATTTGTACAACTAATTGTTGGTGTAAGAGTAGTAGTAGCAGTAGTAAGGGTTTTGGGGGTTGTAGAAGAATATGACTGGGAAATACTTGAAGATAAATCCGACTTAATAGTATTTCTTTGCCAATATTCTAAAGGTGAACGCCAGTCTGGGGATAGACGTGAGTCAAGTAAATGTGAAAGGAAATTTATTGTTCTCAAGGTAATTGGATTTTGAAATAGTACATCATAATTGTAGATACTATCATGATTATTATTATCGTCGTTAAATTGTCGTAAAGAGGAAGAGAGAGAAGGAGAAGAGGTTGAGGAGGAGGTATTTTGTTGATTATGATCAGTTGACATCAGGGAACAGAT] [-] EMBL CD157318 [CATTAGTAACATTATCATTAACACTAATCATCGTCGTTTTGTTTGTATCTTCTGTACAACTTTGATCATTATTTAAACGCGCTACATCTTCTAACAAACTGCCCAATTTATCACGATATCTAGACTCAAAATGGTCACGCGAGATTTCTGGCGCATAGAATTAATCGTGCAGATATAAATGTTGACGGAACTGACTGATGAGATTGATGAAATACAACGAGAAGTGGATGGTAGTGTGGTGGTATTAGTAGTAGCAGATGGTTCATTACTTGTGGGTTGAATTTCATTTTGAGGCTGAGATGAACTATTCGGTTTGACACGTTTCACTGCGCATACTTCCTGATCAGATGATGATGAACGAGTAAAATCTGT ] [-] EMBL CD113861 [ atttGTGGTATTA TAGTAGCAGAT GTTCATTACTTGTAGGTTGAATCTCATTTTGAGGCTGAGATGAACTATTCGGTTTGAAACGTTTCACTGCGCATACTTCCTGATCAGATGATGATGAACGAGTAAAATCTGTATTATTTGTACAACTAATTGTTGGTGTAAGAGTAGTAGTAGCAGTAGTAAGGGTTTTGGGGGTTGTAGAAGAATATGACTGGGAAATACTTGAAGATAAATCCGACTTAATAGTATTTCTTTGCCAATATTCTAAAGGTGAACGCCAGTCTGGGGATAGACGTGAGTCAAGTAAATGTGAAAGGAAATTTATTGTTCTCAAGGTAATTGGATTTTGAAATAGTACATCATAATTGTAGATACTATCATGATTATTATTATCGTCGTTAAATTGTCGTAAAGAGGAAGAGAGAGAAGGAGAAGAGGTTGAGGAGGAGGTATTTTGTTGATTATGATCAGTTGACATCAGGGAACAGAT] consensusID : consensus_10907#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 517 fasta sequence [TGAATAACACACAGCACAAACATAAAGGAGGAGGGGTATCGAAGAACCAGGAGGAAAGCAAAAAGGAAAAATACAAGACAAAAAAGGAAACCAAGTGAAAACATTTCCAATAGCAAAGTGAATAATTTTCAATTAAGTAGAAAAATATACATCACATATGATAATCACGATAACAATCATAAAGTTATTTAAGTAGTATTAGTAGCAGTAGTAAGGNTTTTGGGGGTTGTAGAAGAATATGACTGGGAAATACTTGAAGATAAATCCGACTTAATAGTATTTCTTTGCCAATATTCTAAAGGTGAACGCCAGTCTGGGGATAGACGTGAGTCAAGTAAATGTGAAAGGAAATTTATTGTTCTCAAGGTAATTGGATTTTGAAATAGTACATTATAATTGTAGATACTATCATGATTATTATTATCGTCGTTAAATTGTCGTAAAGAGGAAGAGAGAGAAGGAGAAGAGGTTGAGGAGGAGGTATTTTGTTGATTATGATCAGTTGACTGAGTTGAAC] [-] EMBL CD113824 [TGAATAACACACAGCACAAACATAAAGGAGGAGGGGTATCGAAGAACCAGGAGGAAAGCAAAAAGGAAAAATACAAGACAAAAAAGGAAACCAAGTGAAAACATTTCCAATAGCAAAGTGAATAATTTTCAATTAAGTAGAAAAATATACATCACATATGATAATCACGATAACAATCATAAAGTTATTTAAGTAGTATTAGTAGCAGTAGTAAGGNTTTTGGGGGTTGTAGAAGAATATGACTGGGAAATACTTGAAGATAAATCCGACTTAATAGTATTTCTTTGCCAATATTCTAAAGGTGAACGCCAGTCTGGGGATAGACGTGAGTCAAGTAAATGTGAAAGGAAATTTATTGTTCTCAAGGTAATTGGATTTTGAAATAGTACATTATAATTGTAGATACTATCATGATTATTATTATCGTCGTTAAATTGTCGTAAAGAGGAAGAGAGAGAAGGAGAAGAGGTTGAGGAGGAGGTATTTTGTTGATTATGATCAGTTGACTGAGTTGAAC] [-] EMBL CD113765 [ GGAGGGGTATCGAAGAACCAGGAGGAAAGCAAAAAGGAAAAAAACAAGACAAAAAAGGAAACCAAGTGAAAACATTTCCAATAGCAAAGTGAATAATTTTCAATTAAGTAGAAAAATATACATCACATATGATAATCACGATAACAATCATAAAGTTATTTAAGTAGTATTAGTAGCAGTAGTAAGGNTTTTGGGGNTTGTAGAAGAATATGACTGGGAAATACTTGAAGATAAATCCGACTTAATAGTATTTCTTTGCCAATATTCTAAAGGTGAACGCCAGTCTGGGGATAGACGTGAGTCAAGTAAATGTGAAAGGAAATTTATTGTTCTCAAGGTAATTGGATTTT ] [+] EMBL CD116778 [ TGAAGATAAATCCGACTTAATAGTATTTCTTTGCCAATATTCTAAAGGTGAACGCCAGTCTGGGGATAGACGTGAGTCAAGTAAATGTGAAAGGAAATTTATTGTTCTC ] consensusID : consensus_10907#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 210 fasta sequence [GACGCCAGAATTCGGCACGAGGAATACAGAAGGTACAGCAAATTTGAAAAAACCTACTACTAAATCAAATTGTAATTGTTAATAATTTATGTTTATTTGAATGGATTTTGATGATGACTTATCATCATGTTCTATATGATTTCAAATTGTACTATTTCTGTTGCATCAATTTCTACTGCATAAACTTGTCCTGTCAACATCTTGTTATCC] [+] EMBL CD077529 [GACGCCAGAATTCGGCACGAGGAATACAGAAGGTACAGCAAATTTGAAAAAACCTACTACTAAATCAAATTGTAATTGTTAATAATTTATGTTTATTTGAATGGATTTTGATGATGACTTATCATCATGTTCTATATGATTTCAAATTGTACTATTTCTGTTGCATCAATTTCTACTGCATAAACTTGTCCTGTCAACATCTTGTTATCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10907#0 TTGTAATTTTTTATCCGTATTTTTATCACTGCAGGAAGCAGATGGATCAGTAGAAGATAA 60 consensus_10907#3 ------------------------------------------------------------ consensus_10907#4 ------------------------------------------------------------ consensus_10907#2 ------------------------------------------------------------ consensus_10907#1 ------------------------------------------------------------ consensus_10907#5 ------------------------------------------------------------ consensus_10907#0 CTGTTTATTACAATCAGATGTAACATCATCATTATGCTCAAGTTGTTCACAAGAAATAAT 120 consensus_10907#3 ------------------------------------------------------------ consensus_10907#4 ------------------------------------------------------------ consensus_10907#2 ------------------------------------------------------------ consensus_10907#1 ------------------------------------------------------------ consensus_10907#5 ------------------------------------------------------------ consensus_10907#0 AGGCAAATCAGTTGACTTTGAAACATCATGAGCTGTGGAACTGACTGATGTGAAACTGAA 180 consensus_10907#3 ------------------------------------------------------------ consensus_10907#4 ------------------------------------------------------------ consensus_10907#2 ------------------------------------------------------------ consensus_10907#1 ------------------------------------------------------------ consensus_10907#5 ------------------------------------------------------------ consensus_10907#0 TAATTCATATGTTTATTGTTCTCTTCAACAACTTCACATAATGTTCGCAAAAATGCCAAC 240 consensus_10907#3 ------------------------------------------------------------ consensus_10907#4 ------------------------------------------------------------ consensus_10907#2 ------------------------------------------------------------ consensus_10907#1 ------------------------------------------------------------ consensus_10907#5 ------------------------------------------------------------ consensus_10907#0 ATTGCAATTATACGACCCCAGTTAATACGCTCAAGAAATAATTCTTCTAGAACACTATGA 300 consensus_10907#3 ------------------------------------------------------------ consensus_10907#4 ------------------------------------------------------------ consensus_10907#2 ------------------------------------------------------------ consensus_10907#1 ------------------------------------------------------------ consensus_10907#5 ------------------------------------------------------------ consensus_10907#0 AATTGACATCGTGCCATTTCTAAACGAGTTTGAAGTGAATCATCGCTCACATGACTAGCA 360 consensus_10907#3 ------------------------------------------------------------ consensus_10907#4 ------------------------------------------------------------ consensus_10907#2 ------------------------------------------------------------ consensus_10907#1 ------------------------ATTCTGCTTATTTACATATGGGTGATTCTCTGTTTC 36 consensus_10907#5 ------------------------------------------------------------ consensus_10907#0 GCACCGCTGGCATCACCATCACCAATCCTACTATCACTCTTTACACTTGTGTTGGTATCA 420 consensus_10907#3 ------------------------------------------------------------ consensus_10907#4 ------------------------------------------------------------ consensus_10907#2 ------------------------------------------------------------ consensus_10907#1 ACAATTCGTCTGCGGCTCCAGATGATGAATATGATTATTTGATTAAACTTTTAGCCCTTG 96 consensus_10907#5 ------------------------------------------------------------ consensus_10907#0 CGCACATTAGTAACATTATCATTAACACTAATCATTGTCGTTTTGTTTGTATCTTCTGTA 480 consensus_10907#3 ----CATTAGTAACATTATCATTAACACTAATCATCGTCGTTTTGTTTGTATCTTCTGTA 56 consensus_10907#4 ------------------------------------------------------------ consensus_10907#2 ------------------------------------------------------------ consensus_10907#1 GAGATAGCAATGTTGGGAAAACAAGCTTATTATATCAGTATACTGATAATATTTTCAATC 156 consensus_10907#5 ------------------------------------------------------------ consensus_10907#0 CAACTTTGATCATCTATATTATGATTAATATTATCACTATTGGAATTACTATTTAAACGC 540 consensus_10907#3 CAACTTTGATCAT------------------------------------TATTTAAACGC 80 consensus_10907#4 ------------------------------------------------------------ consensus_10907#2 ------------------------------------------------------------ consensus_10907#1 CACGATTTACAACAACTGTTGGTGTAGATTTT----CGTCAAAAACGTTTAGTTCGGGAA 212 consensus_10907#5 ------------------------------------------------------------ consensus_10907#0 GCTACATCTTCTAACAAACTGCCCAATTTATCACGATATCTAGACTCAAAATGGTCA-GC 599 consensus_10907#3 GCTACATCTTCTAACAAACTGCCCAATTTATCACGATATCTAGACTCAAAATGGTCACGC 140 consensus_10907#4 ------------------------------------------------------------ consensus_10907#2 -------------------------------------AGCCGTCATCAAGAACGTACACT 23 consensus_10907#1 AGTCGTGATTCTGAAGGTCTTTTAGGACCTAAACAACGCTTGCATTTACAGTTATGGGAT 272 consensus_10907#5 ------------------------------------------------------------ consensus_10907#0 GAGATTTCTGGCGCATAGAATTAATCGTGCAGATATAAATGTTGACGGAACTGACTGATG 659 consensus_10907#3 GAGATTTCTGGCGCATAGAATTAATCGTGCAGATATAAATGTTGACGGAACTGACTGATG 200 consensus_10907#4 ------------------------------------------------------------ consensus_10907#2 GAACCATGCTGATCATC-AATTAATTACTAATATTGGGAATCAATTATAGTTG--TCAAG 80 consensus_10907#1 ACGGCTGGACAAGAACGTTATCGAAGTTTATGCACTGTGTTTTTACGTGATGCAATGGGA 332 consensus_10907#5 ------------------------------------------------------------ consensus_10907#0 AGATTGATGATATACAA-GAGAAGTGGATGGTAGTGTGGTGGTATTAGTAGTAGCAGATG 718 consensus_10907#3 AGATTGATGAAATACAACGAGAAGTGGATGGTAGTGTGGTGGTATTAGTAGTAGCAGATG 260 consensus_10907#4 ---TGAATAACACACAGCACAAAC---ATAAAGGAGGAGGGGTATC-GAAGAACCAGGAG 53 consensus_10907#2 TATTGAATAACACACAGCACAAAC---ATAAAGGAGGAGGGGTACC-GAAGAACCAGGAG 136 consensus_10907#1 TTTTTATTGGTATTCGATTTGACCAATGAGAATAGTTTTAAAAATTGTCATGCTTGGATG 392 consensus_10907#5 ------------------------------------------------------------ consensus_10907#0 GTTCATTACTTGTAGGTTGAATTTCATTTTGAGGCTGAGATGAACTATTCGGTTTGAAAC 778 consensus_10907#3 GTTCATTACTTGTGGGTTGAATTTCATTTTGAGGCTGAGATGAACTATTCGGTTTGACAC 320 consensus_10907#4 G---AAAGCAAAAAGGAAAAATACAAGACAAAAAAGGAAACCAAGTGAAAACATTTCCA- 109 consensus_10907#2 G---AAAGCAAAAAGGAAAAAGACAAGACAAAAAAGGAAACCAAGTGAAAACATTTCCA- 192 consensus_10907#1 A---ATTTATTATGTGATAATGCTTATTGTGATCGTCCAGATGTAGTTCTTGTTGGGAAT 449 consensus_10907#5 ------------------------------------------------------------ consensus_10907#0 GTTTCACTGCGCATACTTCCTGATCAGATGATGATGAACGA-GTAAAATCTGT--ATTAT 835 consensus_10907#3 GTTTCACTGCGCATACTTCCTGATCAGATGATGATGAACGA-GTAAAATCTGT--ATTAT 377 consensus_10907#4 ATAGCAAAGTGAATAATTTTCAATTAAGTAGAAAAATATAC-ATCACATATGATAATCAC 168 consensus_10907#2 ATAGCAAAGTGAATAATTTTCAATTAAGTAGAAAAATATAC-ATCACCTATGATAATCAC 251 consensus_10907#1 AAATTTGATCTAACCTCTGAACGTCAAGTATCCATGTCCGCTGCTAAAGCAATGGCTTGT 509 consensus_10907#5 ------------------------------------------------------------ consensus_10907#0 TTGTACAACTAATTGTTGGTGTAAG-AGTAGTAGTAGCAG--TAGTAAGGGTTTTGGGGG 892 consensus_10907#3 TTGTACAACTAATTGTTGGTGTAAG-AGTAGTAGTAGCAG--TAGTAAGGGTTTTGGGGG 434 consensus_10907#4 GATAACAATCATAAAGTTATTTAAGTAGTATTAGTAGCAG--TAGTAAGGNTTTTGGGGG 226 consensus_10907#2 GATAACAATCATAAAGTTATTTAAGTAGTATTAGTAGCAG--TAGTAGGTAAACAAAAAT 309 consensus_10907#1 GATCTCAATGTACCTTATATTGAAACAAGTGCAGCAACTGGTTATCAAGTTAATGATGCT 569 consensus_10907#5 ------------------------------------------------------------ consensus_10907#0 TTGTAGAAGAATATG-ACTGGG--------AAATACTTGAAGATAAATCCGACTTAATAG 943 consensus_10907#3 TTGTAGAAGAATATG-ACTGGG--------AAATACTTGAAGATAAATCCGACTTAATAG 485 consensus_10907#4 TTGTAGAAGAATATG-ACTGGG--------AAATACTTGAAGATAAATCCGACTTAATAG 277 consensus_10907#2 ACGAAAGACAAAATACATTCGATGTAACACAAATACTTGAAAATGGAAT--GTTTATTGA 367 consensus_10907#1 GTGGATCGTTTATTAGATTTAGT--AATGACAAGAATTGAAGCCTCAGT-AACTAAAGCA 626 consensus_10907#5 --------------------------------------------------GACGCCAGAA 10 consensus_10907#0 TATTTCTTTGCCAATATTCTAAAGGTGAACGCCAGTCTGGGGATAGACGTGAGTCAAGTA 1003 consensus_10907#3 TATTTCTTTGCCAATATTCTAAAGGTGAACGCCAGTCTGGGGATAGACGTGAGTCAAGTA 545 consensus_10907#4 TATTTCTTTGCCAATATTCTAAAGGTGAACGCCAGTCTGGGGATAGACGTGAGTCAAGTA 337 consensus_10907#2 GATATTTTCACTGAGATTCATATAATGTATGGAAT------GAATGAAGCAAAGCAAAGA 421 consensus_10907#1 CGTATCCATGGTAATA--CAGAAGGTACA-GCAAATTTGAAAAAACCTACTACTAAATCA 683 consensus_10907#5 TTCGGCACGAGGAATA--CAGAAGGTACA-GCAAATTTGAAAAAACCTACTACTAAATCA 67 * * * * * * * * * * ** * consensus_10907#0 AATGTGAAAGGAAATTTATTGTTCTCAAGGTAAT-TGGATTTTGAA---ATAGTACATTA 1059 consensus_10907#3 AATGTGAAAGGAAATTTATTGTTCTCAAGGTAAT-TGGATTTTGAA---ATAGTACATCA 601 consensus_10907#4 AATGTGAAAGGAAATTTATTGTTCTCAAGGTAAT-TGGATTTTGAA---ATAGTACATTA 393 consensus_10907#2 TACTTGTGATATACACTAACGACATTGAGTAAACATACATATCACATATACAACAGGGAA 481 consensus_10907#1 AATTGTAATTGTTAATAATTTATGTTTATTTGAA-TGGATTTTGATG--ATGACTTATCA 740 consensus_10907#5 AATTGTAATTGTTAATAATTTATGTTTATTTGAA-TGGATTTTGATG--ATGACTTATCA 124 * * * * * * ** * * * consensus_10907#0 TAATTGTA--GATACTATCATGAT-TATTATTATCGTCGTTAAATTGTCGTAAAGAGGAA 1116 consensus_10907#3 TAATTGTA--GATACTATCATGAT-TATTATTATCGTCGTTAAATTGTCGTAAAGAGGAA 658 consensus_10907#4 TAATTGTA--GATACTATCATGAT-TATTATTATCGTCGTTAAATTGTCGTAAAGAGGAA 450 consensus_10907#2 AAGTCCTGC-GACAAAAATACATTACATGAGCACAGAGTTGATATTCTTGTATCGTGATT 540 consensus_10907#1 TCATGTTCTATATGATTTCAAATTGTACTATTTCTGTTGCATCAATTTC-TACTGCATAA 799 consensus_10907#5 TCATGTTCTATATGATTTCAAATTGTACTATTTCTGTTGCATCAATTTC-TACTGCATAA 183 * * * * * * * * * * * ** * consensus_10907#0 --GAGAGAGAAGGAGAAGAGGTTGAGGAGGAGGTATTTTGTTGATTATG---ATCAGTTG 1171 consensus_10907#3 --GAGAGAGAAGGAGAAGAGGTTGAGGAGGAGGTATTTTGTTGATTATG---ATCAGTTG 713 consensus_10907#4 --GAGAGAGAAGGAGAAGAGGTTGAGGAGGAGGTATTTTGTTGATTATG---ATCAGTTG 505 consensus_10907#2 TTACAGGACATGGTTATGCTCTCTCTCTGTCTGTTTTTTCTTGGTCACGTACATAAACAA 600 consensus_10907#1 ACTTGTCCTGTCAACATCTTGTTATCCTGT-TGTGTTGTATTCTCTATGTATATGTGTGT 858 consensus_10907#5 ACTTGTCCTGTCAACATCTTGTTATCC--------------------------------- 210 * * consensus_10907#0 ATTGATTGAAATATTTGAA-TGATTGGTTAGGTGAATGTCAGTAGCTGATTATTGNAGCA 1230 consensus_10907#3 ACATCAGGGAACAGAT-------------------------------------------- 729 consensus_10907#4 ACTGAGTTGAAC------------------------------------------------ 517 consensus_10907#2 ATGTCATGGTATAATAGAGGTCAATGTTCTAGAAATGTTTATTGGTAGAGTAGTCGTACA 660 consensus_10907#1 ACGCTGTGCTATCTCCCCATGTTTGTGAAGATGAACTAACTGATCAACTATAGCCTAATT 918 consensus_10907#5 ------------------------------------------------------------ consensus_10907#0 TCATATATCATTATAGATTATCAGAGACATATCATGGGCGCAGATACTAGTAGAAGTGGT 1290 consensus_10907#3 ------------------------------------------------------------ consensus_10907#4 ------------------------------------------------------------ consensus_10907#2 ATATAAACGAAAGAGGTAATTTGACCACAACACACACACACAAACAAACACATACAGAAT 720 consensus_10907#1 GTGCCAACAACATACTTTTAATTGCTTTACTCTGTTCCTATTAATGATTGTGATTCGGAG 978 consensus_10907#5 ------------------------------------------------------------ consensus_10907#0 CGATGGTGACAGGAAATCNACA-CACCATGTCAGATAGCCATTATTGAGCTAGGGATTGA 1349 consensus_10907#3 ------------------------------------------------------------ consensus_10907#4 ------------------------------------------------------------ consensus_10907#2 TATGGTTACCATAAATTGGATAATAACACATCGAATGGATACCCTCTCTTTCTCCATCCT 780 consensus_10907#1 GATGGAGAAAGAGAGGGTATCCATTCGATGTGTTATTATCCAATTTATGGTAACCATAAT 1038 consensus_10907#5 ------------------------------------------------------------ consensus_10907#0 TTGGAACAATTTGATCGTGGTAGGGACTTTCAGCGTAATTGCTGACCGCAAAAAGATGGC 1409 consensus_10907#3 ------------------------------------------------------------ consensus_10907#4 ------------------------------------------------------------ consensus_10907#2 CCGAATCACAATCATTAATAGGAACAGAGTAGTGATGTGTA------------------- 821 consensus_10907#1 TCTGTATGTGTTTGTTTGTGTGTGTGN--------------------------------- 1065 consensus_10907#5 ------------------------------------------------------------ consensus_10907#0 GAGAAGAATT 1419 consensus_10907#3 ---------- consensus_10907#4 ---------- consensus_10907#2 ---------- consensus_10907#1 ---------- consensus_10907#5 ---------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||