These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10919#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1653 fasta sequence [CTCTACAAATAGAGAAACGCTCATATGAGCACATGTGCACACATCACCGCTAATTAACAATCAGAAAAGAAACAATTAGTGACTAAAATTATATACTCATCAGAACGACAATAATAATCATTGAGTGATAAGAACGCATGTAGTGTTAGTGTAACAATAAAGATGAATTTGACTGTCATATTAGTTAAATGTTTCATTGAATTTTGTTTGTTTTGTTTCCTATTTACGGAGAAAAATGGTCATGACAACAGAGTAGAAGGTGTAAAATGAGTAAACACAGCTAGCAACCATATAACGTTAGCTCTTTTATTCAAGTAGATATAGTAAGAAGAAGAAGAATTCGATATTAAACCAGACTAGCTAATTAGGAAAATATAAAAGCAAATAACAATGACTAAACACGGAACATACACATACACGACGTAACGAAACTCATTTGTACACTCATACACCATGATGATGAAAATACCGAAATCAAAGATCAAGTTATCGTTGAAAAAAAGACGAGTATGAAATAATAAATGGTAGTAAGTACAAGAATGGAGGGCACCAATAGACGTGCTGTTTAATAGAAAGTACCTCTACTGTTGTTATTTATTTAATAAGAAATGGTATAGAAGTATTAAAGTTGGTTAACACAATTAATTTTACTGTGAATAAACATACACAACACAAAGTACTGAATTAAGAACACGTAAACAATGTCATCAAACGGAATGAGAAACAAAAATGAAACTAACTATAAACTTGTTTCTGGTACTGAGACAGCAGTGATAGCACCCAGAGAAGAGGAGTTTGATAGAACAGAAGAAGGACGAGAATTGGTAAGAGCGCATGAATCTGTATGATCTTCCATAACAGCGGAAGAAGCAACAGGACAGAGATGTGAGGAAGCAAATGTTAAAAATGTGCCACTAACAGGCCATGTTGTTGTTAGAGGAGTTGAGTTAACTGACTCATTTGTATTAGATGTTGAGTTTGGTAGACTGGATGTTGCATTAACAGGTGGTGTATGTACTATAGGTACAAGCATTGCTGTTTGCTGTTGAGTGGGTGTAGATGAGGGACGACCTGGTAAAACACCTGTAGCGTTAATTGGCCTATGATAATGTAATAACTGAGAAGGAGCTGTAGCCTCCGTAGACGATTGAAGTACCGATTGTTGTTGACTAGACAAACTGGAGTGAGGAACGGAAACAGGAGGAGGAAAAATAACTGTTGCAGGAGAATGACCACTGTGAATTGCTGCCTGATTGGGTGCTGTATTAGGAAATATAGTTGAACCAGAAGTTAACAGTTGTGAAGCCTGATGGCCATGAGTTGGTATATTAGTTGCAAACGCAATATGTGTTGCTTGCCCCGACTGCAAATGAACCTGATGACCCACTAAATGTGCAGCTGAATGATGTGGATTAATAATTGTTCCCTGTGGGTGAGAAGTGGGAATAGAAGTTAGAGTAAACTGTTGTCCAGGTTCTAGAGTGAGTCGAGGATCCAGCGGTTCCAAATAGACAGTATCTCCACCAACAGAATTCAATATAAATCCACCATCAGGTCCAGCGGTAGCTAAAGTAGCAGTACATGATCGATCCAATTCACCTGTTGGTGTAACAAAAGCAACTGAAGTTTGTCTGAGCTGCTTCACCATGATGA] [+] EMBL CD063232 [CTCTACAAATAGAGAAACGCTCATATGAGCACATGTGCACACATCACCGCTAATTAACAATCAGAAAAGAAACAATTAGTGACTAAAATTATATACTCATCAGAACGACAATAATAATCATTGAGTGATAAGAACGCATGTAGTGTTAGTGTAACAATAAAGATGAATTTGACTGTCATATTAGTTAAATGTTTCATTGAATTTTGTTTGTTTTGTTTCCTATTTACGGAGAAAAATGGTCATGACAACAGAGTAGAAGGTGTAAAATGAGTAAACACAGCTAGCAACCATATAACGTTAGCTCTTTTATTCAAGTAGATATAGTAAGAAGAAGAAGAATTCGATATTAAACCAGACTAGCTAATTAGGAAAATATAAAAGCAAATAACAATGACTAAACACGGAACATACACATACACGA ] [-] EMBL CD096468 [ ACACAGCTAGCAACCATATAACGTTAGCTCTNTTATTCAAGTAGATATAGTAAGAAGAAGAAGAATTCGATATTAAACCAGACTAGCTAATTAGGAAAATATAAAAGCAAATAACAATGACTAAACACGGAACATACACATACACGACGTAACGAAACTCATTTGTACACTCATACACCATGATGATGAAAATACCGAAATCAAAGATCAAGTTATCGTTGAAAAAAAGACGAGTATGAAATAATAAATGGTAGTAAGTACAAGAATGGAGGGCACCAATAGACGTGCTGTTTAATAGAAAGTACCTCTACTGTTGTTATTTATTTAATAAGAAATGGTATAGAAGTATTAAAGTTGGTTAACACAATTAATTTTACTGTGAATAAACATACACAACACAAAGTACTGAATTAAGAACACGTAAACAATGTCATCAAACGGAATGAGAAACAAAAATGAAACTAACTATAAACTTGTTTCTGGTACTGAGACAGCAGTGATAGCACCCAGAGAAGAGGAGTTTGATAGAACAGAAGAAGGACGAGAATTGGTAAGAGCGCATGAATCTGTATGA ] [-] EMBL CD135305 [ TATTTAATAAGAAATGGTATAGAAGTATTAAAGTTGGTTAACACAATTAATTTTACTGTGAATAAACATACACAACACAAAGTACTGAATTAAGAACACGCAAACAATGTCATCAAACGGAATGAGAAACAAAAATGAAGCTAACTATAAACTTGTTTCTGGTACTGAGACAGCAGTGATAGCACCCAGAGAAGAGGAGTTTGATAGAACAGAAGAAGGACGAGAATTGGTAAGAGCGCATGAATCTGTATGATCTTCCATAACAGCGGAAGAAGCAACAGGACAGAGATGTGAGGAAGCAAATGTTAAAAATGTGCCACTAACAGGCCATGTTGTTGTTAGAGGAGTTGAGTTAACTGACTCATTTGTATTAGATGTTGAGTTTGGTAGACTGGATGTTGCATTAACAGGTGGTGTATGTACTATAGGTACAAGCATTGCTG ] [-] EMBL CD199321 [ TAAGAAATGGTATAGAAGTATTAGAGTTGGTTCACACAATTAATTTTACTGTGAATAAACATACACAACACAAAGTACTGAATTAAGAACACGTAAACAATGTCATCAAACGGAATGAGAAACAAAAATGAAACTAACTATAAACTTGTTTCTGGTACTGAGACAGCAGTGATAGCACCCAGAGAAGAGGAGTTTGATAGAACAGAAGAAGGACGAGAATTGGTAAGAGCGCATGAATCTGTATGA ] [-] EMBL CD135352 [ GTCATCAAACGGAATGAGAAACAAAAATGAAACTAACTATAAACTTGTTTCTGGTACTGAGACAGCAGTGATAGCACCCAGAGAAGAGGAGTTTGATAGAACAGAAGAAGGACGAGAATTGGTAAGAGCGCATGAATCTGTATGATCTTCCATAACAGCGGAAGAAGCAACAGGACAGAGATGTGAGGAAGCAAATGTTAAAAATGTGCCACTAACAGGCCATGTTGTTGTTAGAGGAGTTGAGTTAACTGACTCATTTGTATTAGATGTTGAGTTTGGTAGACTGGATGTTGCATTAACAGGTGGTGTATGTACTATAGGTACAAGCATTGCTGTTTGCTGTTGAGTGGGTGTAGAc ] [-] EMBL CD183056 [ GAAGAAGGACGAGAATTGGTAAGAGCGCATGAATCTGTAAGATCTTTCATAACAGCGGAAGAAGCAACAGGACAGAGATGTGAGGAAGCAAATGTTAAAAATGTGCCACTAACAGGCCATGTTGTTGTTAGAGGAGTTGAGTTAACTGACTCATTTGTATTAGATGTTGAGTTTGGTAGACTGGATGTTGCATTAACAGGTGGTGAATGTACTATAGGTACAAGCATTGCTGTTTGCTGTTTAGTGGGTGTAGATTAAGGACCACCTGGTAAAACACCTGTAGCGTTAATTGGCCTATGATAATGTAATAACTGAGA ] [+] EMBL CD178764 [ TTAAAAATGTGCCACTAACAGGCCATGTTGTTGTTAGAGGAGTTGAGTTAACTGACTCATTTGTATTAGATGTTGAGTTTGGTAGACTGGATGTTGCATTAACAGGTGGTGTATGTACTATAGGTACAAGCATTGCTGTTTGCTGTTGAGTGGGTGTAGATGAGGGACGACCTGGTAAAACACCTGTAGCGTTAATTGGCCTATGATAATGTAATAACTGAGAAGGAGCTGTAGCCTCCGTAGACGATTGAAGTACCGATTGTTGTTGACTAGACAAACTGGAGTGAGGAACGGAAACAGGAGGAGGAAAAATAACTGTTGCAGGAGAATGACCACTGTGAATTGCTGCCTGATTGGGTGCTGTATTAGGAAATATAGTTGAACCAGAAGTTAACAGTTGTGAAGCCTGATGGCCATGAGTTGGTATATTAGTTGCAAACGC ] [+] EMBL CD163851 [ TTAGATGTTGAGTTTGGTAGACTGGATGTTGCATTAACAGGTGGTGTATGTACTATAGGTACAAGCATTGCTGTTTGCTGTTGAGTGGGTGTAGATGAGGGACGACCTGGTAAAACACCTGTAGCGTTAATTGGCCTATGATAATGTAATAACTGAGAAGGAGCTGTAGCCTCCGTAGACGATTGAAGTACCGATTGTTGTTGACTAGACAAACTGGAGTGAGGAACGGAAACAGGAGGAGGAAAAATAACTGTTGCAGGAGAATGACCACTGTGAATTGCTGCCTGATTGGGTGCTGTATTAGGAAATATAGTTGAA CAGAAGTTAACAGTTGTGAAGCCTGATGGCCATGAGTTGGTATATTAGTTGCAAACGCAATATGTGTTGCTTGCCCCGACTGCAAATGAACCTGATGACCCACTAAATGTGCAGCTGAATGAT ] [-] EMBL CD183656 [ GTAGCGTTAATTGGCCTATGATAATGTAATAACTGAGAAGGAGCTGTAGCCTCCGTAGACGATTGAAGTACCGATTGTTGTTGACTAGACAAACTGGAGTGAGGAACGGAAACAGGAGGAGGAAAAATAACTGTTGCAGGAGAATGACCACTGTGAATTGCTGCCTGATTGGGTGCTGTATTAGGAAATATAGTTGAACCAGAAGTTAACAGTTGTGAAGCCTGATGGCCATGAGTTGGTATATTAGTTGCAAACGCAATATGTGTTGCTTGCCCCGACTGCAAATGAACCTGATGACCCACTAAATGTGCAGCTGAATGATGTGGATTAATAATTGTTCCCTGTGGGTGAGAAGTGGGAATAGAAGTTAGAGTA ] [+] EMBL CD114103 [ CAAACGCAATATGTGTTGCTTGCCCCGACTGCAAATGAACCTGATGACCCACTAAATGTGCAGCTGAATGATGTGGATTAATAATTGTTCCCTGTGGGTGAGAAGTGGGAATAGAAGTTAAAGTAAACTGTTGTCCAGGTTCTAGAGTGAGTCGAGGATCCAGCGGTTCCAAATAGACAGTATCTCCACCAACAGAATTCAATATAAATCCACCATCAGGTCCAGCGGTAGCTAAAGTAGCAGTACATGATCGATCCAATTCACCTGTTGGTGTAACAAAAGCAACTGAAGTTTGTCTGAGCTGCTTCACCATGATGA] [-] EMBL CD163789 [ GATGACCCACTAAATGTGCAGCTGAATGGTGTGGATTAATAATTGTTCCCTGTGGGTGAGAAGTGGGAATAGAAGTTAGAGTAAACTGTTGTCCAGGTTCTAGAGTGAGTCGAGGATCCAGCGGTTCCAAATAGACAGTATCTCCACCAACAGAATTCAATATAAATCCACCATCAGGTg ] [-] EMBL CD181200 [ AATGTGCAGCTGTATGATGTGGATTAATAATTGTTCCCTGTGGGTGAGAAGTGGGAATAGAAGTTAGAGTAAACTGTTGTCCAGGTTCTAGAGTGAGTCGA ] consensusID : consensus_10919#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1143 fasta sequence [TTAAAAGAAACAGGGGGGGGGAACTATTACACAACTGATAAAAACAAAATGAAGATAGAAAGAAGAATGAATAACCAAAAAATACTCAATGATGTCTAGTTTACATGTATTGATAATGTGAATATACACAAACTAACACACACGTACATACATAAGCAGCTTCATGTAAACATGAATGAGGAAGGGGGGAGGAGAGGAAAAAGACAACTGGGAATATTGGTAATCAGATGATTAAGCAGAAAGAATTAAGGAAAGAGAGAAAATTAACATGTAAGATTCATATTGACAGTTACATTTATAAGTGTATATGCTTCAATATATATATGCGTGTGTAACGGGTGGAGGGGGGGAGTAAACAAACACTCCTACAATAATTCTGATAAAGATTTTTCCCCTCAAAAATATCTAAGACTTGCTCATTTCACAGCATCGACACGACGCACGATGAATAATTCGCCCAAAGTAGGATTGCTGAAGAGTAGTAGTAGTATTAGCAGTAGTAGTAGGCGTACCTAAATATTTTTAGCAAAGCATAATGCAGTACGGAGGCGGCAGTATACTCAACTTGTATGTGTGCATATACGTTTGAATATGCACAAGTTTATTTATGATTAGCAAAAATATAGAGAATAACTAAATTGATGTAAAGGGTGGGGGTGTATAGCGCAGAAAAAAGAACTTTGATGGAGAAAAAAAACATAATTAATCAACAACAACTTAGTTGCTGAGTGAAATCATAAATTCGTTAGCCAAAAAAAGGAATACTGTTAATTTGTTTTTTCTTTTAAAAAAATAAGGAAACTAAGCCAAAAGAGGAAGAAAAAGCACTGGCACTGGTGAATACACACACATACATAAAAGAAGAAATTACATAATCGGGTCCTGTTTCTTTTTATTCTGATTGTTAATTAGCGGTGATGTGTGCACATGTGCTCATATGAGCGTTTCTCTATTTGTGTGTTTGTCTATACATCATGTAAACTAAATGCAACCTGGATGAATATGTAGATATAAGGAAACATTTTTTGCTTTTCCCCCTACATTATTTCATCATTAATCCATATTGTGTATTGTATAANAAACAAACTAATATACTTTTTTTTTCTCATTTTATTTCATTAATTTAAAACTTTTCGTTTATTA] [+] EMBL CD132672 [TTAAAAGAAACAGGGGGGGGGAACTATTACACAACTGATAAAAACAAAATGAAGATAGAAAGAAGAATGAATAACCAAAAAATACTCAATGATGTCTAGTTTACATGTATTGATAATGTGAATATACACAAACTAACACACACGTACATACATAAGCAGCTTCATGTAAACATGAATGAGGAAGGGGGGAGGAGAGGAAAAAGACAACTGGGAATATTGGTAATCAGATGATTAAGCAGAAAGAATTAAGGAAAGAGAGAAAATTAACATGTAAGATTCATATTGACAGTTACATTTATAAGTGTATATGCTTCAATATATATATGCGTGTGTAACGGGTGGAGGGGGGGAGTAAACAAACACTCCTACAATAATTCTGATAAAGATTTTTCCCCTCAAAAATATCTAAGACTTGCTCATTTCACAGCATCGACACGACGCACGATGAA ] [-] EMBL CD082951 [ GGGGGAGTAAACAAACACTCNTACAATAATTCTGATAAAGATTTTTCCCCTCAAAAATATCTAAGACTTGCTCATTTCACAGCATCGACACGACGCACGATGAATAATTCGCCCAAAGTAGGATTGCTGAAGAGTAGTAGTAGTATTAGCAGTAGTAGTAGGCGTACCTAAATATTTTTAGCAAAGCATAATGCAGTACGGAGGCGGCAGTATACTCAACTTGTATGTGTGCATATACGTTTGAATATGCACAAGTTTATTTATGATTAGCAAAAATATAGAGAATAACTAAATTGATGTAAAGGGTGGGGGTGTATAGCGCAGAAAAAAGAACTTTGATGGAGAAAAAAAACATAATTAATCAACAACAACTTAGTTGCTGAGTGAAATCATAAATTCGTTAGCCAAAAAAAGGAATACTGTTAATTTGTTTTTTCTTTTAAAAAAATAAGGAAACTAAGCCAAAAGAGGAAGAAAAAGCACTGGCACTGGTGAATACACACACATACATAAAAGAAGAAATTACATAATCGGGTCCTGTTTCTTTTcct ] [+] EMBL CD096133 [ TGCATATACGTTTGAATATGCACAAGTTTATTTATGATTAGCAAAAATATAGAGAATAACTAAATTGATGTAAAGGGTGGGGGTGTATAGCGCAGAAAAAAGAACTTTGATGGAGAAAAAAAACATAATTAATCAACAACAACTTAGTTGCTGAGTGAAATCATAAATTCGTTAGCCAAAAAAAGGAATACTGTTAATTTGTTTTTTCTTTTAAAAAAATAAGGAAACTAAGCCAAAAGAGGAAGAAAAAGCACTGGCACTGGTGAATACACACACATACATAAAAGAAGAAATTACATAATCGGGTCCTGTTTCTTTTTATTCTGATTGTTAATTAGCGGTGATGTGTGCACATGTGCTCATATGAGCGTTTCTCTATTTGTGTGTTTGTCTATACATCATGTAAACTAAATGCAACCTGGATGAATATGTAGATATAAGGAAACATTTTTTGCTTTTCCCCCTACATTATTTCATCATTAATCCATATTGTGTATTGTATAANAAACAAACTAATATACTTTTTTTTTCTCATTTTATTTCATTAATTTAAAACTTTTCGTTTATTA] [+] EMBL CD096128 [ TGCATATACGTTTGAATATGCACAAGTTTATTTATGATTAGCAAAAATATAGAGAATAACTAAATTGATGTAAAGGGTGGGGGTGTATAGCGCAGAAAAAAGAACTTTGATGGAGAAAAAAAACATAATTAATCAACAACAACTTAGTTGCTGAGTGAAATCATAAATTCGTTAGCCAAAAAAAGGAATACTGTTAATTTGTTTTTTCTTTTAAAAAAATAAGGAAACTAAGCCAAAAGAGGAAGAAAAAGCACTGGCACTGGTGAATACACACACATACATAAAAGAAGAAATTACATAATCGGGTCCTGTTTCTTTTTATTCTGATTGTTAATTAGCGGTGATGTGTGCACATGTGCTCATATGAGCGTTTCTCTATTTGTGTGTTTGTCTATACATCATGTAAACTAAATGCAACCTGGATGAATATGTAGATATAAGGAAACATTTTTTGCTTTTCCCCCTACATTATTTCATCATTAATCCATATTGTGTATTGTATAAAAAACAAACTAATATACTTTNTTTTTCTCATTNTATTTCATTAATTTAA ] consensusID : consensus_10919#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1061 fasta sequence [GTGTATATTACAGT-CAATA-TA-TA-TAAT-ATTG-AAT-AACGAGT-ATCATA-AAG-TTTCG-TTG-TTTTTTTC-TAAATCAGTGC-ACAAAAAAACGTGGAGNAAGNAATATTTGATCGGTCAATGATTAAATGGGGGTAGTAGTAGTATGAGTAGTAGTTAAGAGAGATTATTCTCGAAAGGGGGTGTGTTTTATACTCATTAAAAAGGGGAAGAGTGAAGAATCAATAGTAATTATAGTACCAATAATAATAATAGTAATAGTATTAGTTGTTGTAATAATAGTAGTGAAACGAACGTTGTTTACCTCAGAGCAGCAGTAATAATAATCATTATCATTGTAATAATAATA--ATAATAATAAGATTGGTAAGTAATAGGTAGTTAACCAATTCATTTTCAATCTGTTTTCCATTTATCCACCCCTTCACTCACTCACACACACATATATAGAGTTCCTCTTGTGAACCCATGGTAACTCATGAGCATACACACAAGAAGGGTATAAAGTATAAGAGTCTAAAAATTAAATCAACTACTTTAGCCAAATATGAATCCATTGTGTTTATGTGAGTATTCATTCAAATGATTGAACATTGAACAACAGGTATATATTGACACATTGAATACATAGATATATACCTGTATTTGAGCAAGAGGATAGTACACATGATAGTATTAAGGAAATAGATTGAATTCATGTGTTTGTGAAAAAAAAGAAGGCAACCAATTTGAGTTCATATATATAGATTGTTAATAATCACCATAGTTATTATAAAATTAATTGAACTACGATAACCCTGGTAACAGCACTTAAAAGAAACA-GGGGGGGGAACTATTACACAACTGATAAAAACAAAATGAAGATAGAAAGAAGAATGAATAACCAAAAAATACTCAATGATGTCTAGTTTACATGTATTGATAATGTGAATATACACAAACTAACACACACGTACATACATAAGCAGCTTCATGTAAACATGAATGAGGAAGGGGGGAGGAGAGGAAAAAGACAACTGGGAATATTGGTAATCAGATGATNTAAGCAGACGCTCGTGCCGAATTATTG] [-] EMBL CD081659 [GTGTATATTACAGT CAATA TA TA TAAT ATTG AAT AACGAGT ATCATA AAG TTTCG TTG TTTTTTTC TAAATCAGTGC ACAAAAAAACGTGGAGNAAGNAATATTTGATCGGTCAATGATTAAATGGGGGTAGTAGTAGTATGAGTAGTAGTTAAGAGAGATTATTCTCGAAAGGGGGTGTGTTTTATACTCATTAAAAAGGGGAAGAGTGAAGAATCAATAGTAATTATAGTACCAATAATAATAATAGTAATAGTATTAGTTGTTGTAATAATAGTAGTGAAACGAACGTTGTTTACCTCAGAGCAGCAGTAATAATAATCATTATCATTGTAATAATAATA ATAATAATAAGATTGGTAAGTAATAGGTAGTTAACCAATTCATTTTCAATCTGTTTTCCATTTATCCACCCCTTCACTCACTCACACACACATATATAGAGTTCCTCTTGTGAACCCATGGTAACTCATGAGCATACACACAAGAAGGGTATAAAGTATAAGAGTCTAAAAATTAAATCAACTACTTTAGCCAAATATGAATCCATTGTGTTTATGTGAGTATTCATTCAAATGATTGAACATTGAACAACAGGTATATATTGACACATTGAATACATAGATATATACCTGTATTTGAGCAAGAGGATAGTACACATGATAGTATTAAGGAAATAGATTGAATTCATGTGTTTGTGAAAAAAAAGAAGGCAACCAATTTGAGTTCATATATATAGATTGTTAATAATCACCATAGTTATTATAAAATTAATTGAACTACGATAACCCTGGTAACAGCACTTAAAAGAAACA GGGGGGGGAACTATTACACAACTGATAAAAACAAAATGAAGATAGAAAGAAGAATGAATAACCAAAAAATACTCAATGATGTCTAGTTTACATGTATTGATAATGTGAATATACACAAACTAACACACACGTACATACATAAGCAGCTTCATGTAAACATGAATGAGGAAGGGGGGAGGAGAGGAAAAAGACAACTGGGAATATTGGTAATCAGATGATNTAAGCAGACGCTCGTGCCGAATTATTG] [+] EMBL CD076536 [ AGTACAATATTATTATTAATAATTGAAATAAACGAGTAATCATAGAAGTTTTCGTTTGTTTTTTTTCTTAATTCAGTGCAACAAAAAAACTGGGAGGAAGAAATTATTGATCGGTCAATGATTAAATGGGGGTAGTAGTAGTATGAGTAGTAGTTAAGAGAGATTTATCTCGAAAGGGGGTGTGTTTTATACTCATTAAAAAGGGGAAGAGTGAAGAATCAATGGTAATTATAGTAACAATAATAATAATAGTAATAGTATTAGTTGTTGTAATAATAGTAGTGAAACGAACGTTGTTTACCTCAGAGCAGCAGTAATAATAATCATTATCATTGTAATAATAATA ATAATAATAAGATTGGTAAGTAATAGGTAGTTAACCAATTCATTTTCAATCTGTTTTCCATTTATCCACCCCTTCACTCACTCACACACACATATATAGAGTTCCTCTTGTGAACCCATGGTAACTCATGAGCATACACACAAGAAGGGTATAAAGTATAAGAGTCTAAAAATTAAATCAACTACTTTAGCCAAATATGAATCCATTGTGTTTATGTGAGTATTCATTCAAATGATTGAACATTGAACAACAGGTATATATTGACACATTGAATACATAGATATATACCTG ] [-] EMBL AI882667 [ ATAGTATTAGTGGTTGTAATAATAGTAGTGAAACGAAAGTTGTTTACCTCAGAGCAGCAGTAATAATAATCATTATCATTGTAATCATCATATCATAATAATAAGATTGGTAAGTAATAGGTAGTTAACCAATTCATTTTCAATCTGTTTTCCATTTATCCACCCCTTCACTCACTCACACACACATATATAGAGTTCCTCTTGTGAACCCATGGTAACTCATGAGCATACACACAAGAAGGGTATCAGGTATAAGAG ] [-] EMBL CD077691 [ TAGGTAGT ACCAATTCA TTTCAATCTG TTTCCATTTAT CACCCCTTCACTCACTCACACACACATATATAGAGTTCCTCTTGTGAACCCATGGTAACTCATGAGCATACACACAAGAAGGGTATAAAGTATAAGAGTCTAAAAATTAAATCAACTACTTTAGCCAAATATGAATCCATTGTGTTTATGTGAGTATTCATTCAAATGATTGAACATTGAACAACAGGTATATATTGACACATTGAATACATAGATATATACC ] [-] EMBL CD077501 [ TTGAGTTCATATATATAGATTGTTAATAATCACCATAGTTATTATAAAATTAATTGAACTACGATAACCCTGGTAACAGCACTTAAAAGAAACAGGGGGGGGGAACTATTACACAACTGATAAAAACAAAATGAAGATAGAAAGAAGAATGAATAACCAAAAAATACTCAATGATGTCTAGTTTACATGTATTGATAATGTG ] [-] EMBL CD077722 [ acTAAAAGAAACA GGGGGGGGAACTATTACACAACTGATAAAAACAAAATGAAGATAGAAAGAAGAATGAATAACCAAAAAATACTCAATGATGTCTAGTTTACATGTATTGATAATGTGAATATACACAAACTAACACACACGTACATACATAAGCAGCTTC ] consensusID : consensus_10919#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 515 fasta sequence [ACTTTCATGAAGGTTTAATATATAAGCCTTTTTGTTACCCCTCTGGCTCTCTCTCTCTCATGCAAATATATACATAGATATACATATTTGTACAGTGTGTTGTTGTCCGGACTCGAAGCATGAGATTTGCTATTGTTCTATACTTTCTCTCCATCTGTCTGTCTGTCTGTCTGTTTGGAACCACTGCTAATTTAGTCCGTTTTAATTTTGTCTGATCTTTGTTTTTTTTTAATGAGTGTTTGAAAATACTACTGATCTATTTTATCTATGTGTATGTTTGTTTACACAAAATGCAGATATGTGACCAGAATAAAAAGAAACAGGACCCGATTATGTAATTTCTTCTTTTATGTATGTGTGTGTATTCACCAGTGCCAGTGCTTTTTCTTCCTCTTTTGGCTTAGTTTCCTTATTTTTTTAAAAGAAAAAACAAATTAACAGTATTCCTTTTTTTGGCTAACGAATTTATGATTTCACTCAGCAACTAAGTTGTTGTTGATTAATTATGTTTTTTT] [-] EMBL CD065527 [ACTTTCATGAAGGTTTAATATATAAGCCTTTTTGTTACCCCTCTGGCTCTCTCTCTCTCATGCAAATATATACATAGATATACATATTTGTACAGTGTGTTGTTGTCCGGACTCGAAGCATGAGATTTGCTATTGTTCTATACTTTCTCTCCATCTGTCTGTCTGTCTGTCTGTTTGGAACCACTGCTAATTTAGTCCGTTTTAATTTTGTCTGATCTTTGTTTTTTTTTAATGAGTGTTTGAAAATACTACTGATCTATTTTATCTATGTGTATGTTTGTTTACACAAAATGCAGATATGTGACCAGAATAAAAAGAAACAGGACCCGATTATGTAATTTCTTCTTTTATGTATGTGTGTGTATTCACCAGTGCCAGTGCTTTTTCTTCCTCTTTTGGCTTAGTTTCCTTATTTTTTTAAAAGAAAAAACAAATTAACAGTATTCCTTTTTTTGGCTAACGAATTTATGATTTCACTCAGCAACTAAGTTGTTGTTGATTAATTATGTTTTTTT] [+] EMBL CD169583 [ TTGTACAGTGTGTTGTTGTCCGGACTCGAAGCATGAGATTTGCTATTGTTCTATACTTTCTCTCCATCTGTCTGTCTGTCTGTCTGTTTGGAACCACTGCTAATTTAGTCCGTTTTAATTTTGTCTGATCTTTGTTTTTTTTTAATGAGTGTTTGAAAATACTACTGATCTATTTTATCTATGTGTATGTTTGTTTACACAAAATGCAGATATGTGACCAGAATAAAAAGAAACAGGACCCGATTATGTAATTTCTTCTTTTATGTATGTGTGTGTA ] consensusID : consensus_10919#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence [TAGAGTATACCATGCACTCATCGGGATCCATCGGGAATGAGAACAAAAATGAAACTAACTATAAACTTGTTTCTGGTACTGAGACAGCAGTGATAGCACCCAGAGAAGAGGAGTTTGATAGAACAGAAGAAGGACGAGAATTGGTAAGAGCGCATGAATCTGTATGATCTTCCATAACAGCGGAAGAAGCAACAGGACAGAGATGTGAGGAAGCAAATGTTAAAAATGTGCCACTAACAGGCCATGTTGTTGTTAGAGGAGTTGAGTTACCTGACTCATTTGTATTAGATGTTGAGTTTGGTAGACAGGATGTTGCATTAACAGGTGGTGTATGTACTATAGGTACAAGCATTGCTGTTTGCTGTTGAGTGGGTGTAGATGAGGGACGACCTGGTAAAACACCTGTAGCGTTCATTGGCCTATGATAATGTAATAACTGAGAAGGAGCTGTAGCCTCCGTAGACGATTGAAGTACCGATTG] [+] EMBL CD061826 [TAGAGTATACCATGCACTCATCGGGATCCATCGGGAATGAGAACAAAAATGAAACTAACTATAAACTTGTTTCTGGTACTGAGACAGCAGTGATAGCACCCAGAGAAGAGGAGTTTGATAGAACAGAAGAAGGACGAGAATTGGTAAGAGCGCATGAATCTGTATGATCTTCCATAACAGCGGAAGAAGCAACAGGACAGAGATGTGAGGAAGCAAATGTTAAAAATGTGCCACTAACAGGCCATGTTGTTGTTAGAGGAGTTGAGTTACCTGACTCATTTGTATTAGATGTTGAGTTTGGTAGACAGGATGTTGCATTAACAGGTGGTGTATGTACTATAGGTACAAGCATTGCTGTTTGCTGTTGAGTGGGTGTAGATGAGGGACGACCTGGTAAAACACCTGTAGCGTTCATTGGCCTATGATAATGTAATAACTGAGAAGGAGCTGTAGCCTCCGTAGACGATTGAAGTACCGATTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10919#0 CTCTACAAATAGAGAAACGCTCATATGAGCACATGTGCACACATCACCGCTAATTAACAA 60 consensus_10919#4 ------------------------------------------------------------ consensus_10919#1 ------------------------------------------------------------ consensus_10919#2 ------------------------------------------------------------ consensus_10919#3 ------------------------------------------------------------ consensus_10919#0 TCAGAAAAGAAACAATTAGTGACTAAAATTATATACTCATCAGAACGACAATAATAATCA 120 consensus_10919#4 ------------------------------------------------------------ consensus_10919#1 ------------------------------------------------------------ consensus_10919#2 ------------------------------------------------------------ consensus_10919#3 ------------------------------------------------------------ consensus_10919#0 TTGAGTGATAAGAACGCATGTAGTGTTAGTGTAACAATAAAGATGAATTTGACTGTCATA 180 consensus_10919#4 ------------------------------------------------------------ consensus_10919#1 ------------------------------------------------------------ consensus_10919#2 ------------------------------------------------------------ consensus_10919#3 ------------------------------------------------------------ consensus_10919#0 TTAGTTAAATGTTTCATTGAATTTTGTTTGTTTTGTTTCCTATTTACGGAGAAAAATGGT 240 consensus_10919#4 ------------------------------------------------------------ consensus_10919#1 ------------------------------------------------------------ consensus_10919#2 ------------------------------------------------------------ consensus_10919#3 ------------------------------------------------------------ consensus_10919#0 CATGACAACAGAGTAGAAGGTGTAAAATGAGTAAACACAGCTAGCAACCATATAACGTTA 300 consensus_10919#4 ------------------------------------------------------------ consensus_10919#1 ------------------------------------------------------------ consensus_10919#2 ------------------------------------------------------------ consensus_10919#3 ------------------------------------------------------------ consensus_10919#0 GCTCTTTTATTCAAGTAGATATAGTAAGAAGAAGAAGAATTCGATATTAAACCAGACTAG 360 consensus_10919#4 ------------------------------------------------------------ consensus_10919#1 ------------------------------------------------------------ consensus_10919#2 ------------------------------------------------------------ consensus_10919#3 ------------------------------------------------------------ consensus_10919#0 CTAATTAGGAAAATATAAAAGCAAATAACAATGACTAAACACGGAACATACACATACACG 420 consensus_10919#4 ------------------------------------------------------------ consensus_10919#1 ------------------------------------------------------------ consensus_10919#2 ------------------------------------------------------------ consensus_10919#3 ------------------------------------------------------------ consensus_10919#0 ACGTAACGAAACTCATTTGTACACTCATACACCATGATGATGAAAATACCGAAATCAAAG 480 consensus_10919#4 ------------------------------------------------------------ consensus_10919#1 ------------------------------------------------------------ consensus_10919#2 ------------------------------------------------------------ consensus_10919#3 ------------------------------------------------------------ consensus_10919#0 ATCAAGTTATCGTTGAAAAAAAGACGAGTATGAAATAATAAATGGTAGTAAGTACAAGAA 540 consensus_10919#4 ------------------------------------------------------------ consensus_10919#1 -----------------------------------------------TTAAAAGAAACAG 13 consensus_10919#2 -------------------------------GTGTATATTACAGTCAATATATATAATAT 29 consensus_10919#3 ------------------------------------------------------------ consensus_10919#0 TGGAGGGCACCAATAGACGTGCT-----GTTTAATAGAAAGTACCTCTACTGTTGTTATT 595 consensus_10919#4 ------------------------------------------------------------ consensus_10919#1 GGGGGGGGAACTATTACACAACT-----GATAAAAACAAAATGAAGATAGAAAGAAGAAT 68 consensus_10919#2 TGAATAACGAGTATCATAAAGTTTCGTTGTTTTTTTCTAAATCAGTGCACAAAAAAACGT 89 consensus_10919#3 ------------------------------------------------------------ consensus_10919#0 T-ATTTAATAAGAAATGGTATAG-AAGTATTAAAGTTGGTTAACACAATTAATTTTACTG 653 consensus_10919#4 ------------------------------------------------------------ consensus_10919#1 G-AATAACCAAAAAATACTCAAT-GATGTCTA--GTTTACATGTATTGATAATGTGAATA 124 consensus_10919#2 GGAGNAAGNAATATTTGATCGGTCAATGATTA---AATGGGGGTAGTAGTAGTATGAGTA 146 consensus_10919#3 ------------------------------------------------------------ consensus_10919#0 TGAATAAACATACACAACACAAAGTACTGAATTAAGAACACGTAAACAATGTCATCAAAC 713 consensus_10919#4 ---------------------------TAGAGTAT-ACCATGCACTCATCGGGATCCATC 32 consensus_10919#1 TACACAAACTAACACACACGTACATACATAAGCAGCTTCATGTAAACATGAATGAGGAAG 184 consensus_10919#2 GTAGTTAAGAGAGATTATTCTCGAAAGGGGGTGTGTTTTATACTCAT-TAAAAAGGGGAA 205 consensus_10919#3 ------------------------------------------------------------ consensus_10919#0 GGAATGAGAAACAAAAATGAAACTAACTATAAACTTGTTTCTGGTACTGAGACAGC--AG 771 consensus_10919#4 GGGAATGAGAACAAAAATGAAACTAACTATAAACTTGTTTCTGGTACTGAGACAGC--AG 90 consensus_10919#1 GGGGGAGGAGAGGAAAAAGA---CAACTGGGAATAT-----TGGTAATCAGATGATTAAG 236 consensus_10919#2 GAGTGAAGAATCAATAGTAATTATAGTACCAATAATAATAATAGTAATAGTATTAGT-TG 264 consensus_10919#3 ------------------------------------------------------------ consensus_10919#0 TGATAGCACC--CAGAGAAGAGGAGTTTGATAGAACAGAAGAAGGACGAGAATTGGTAAG 829 consensus_10919#4 TGATAGCACC--CAGAGAAGAGGAGTTTGATAGAACAGAAGAAGGACGAGAATTGGTAAG 148 consensus_10919#1 CAGAAAGAAT--TAAGGAAAGAGAGAAAATTAACATGTAAGATTCAT----ATTGACAGT 290 consensus_10919#2 TTGTAATAATAGTAGTGAAACGAACGTTGTTTACCTCAGAGCAGCAGTAATAATAATCAT 324 consensus_10919#3 -------ACTTTCATGAAGGTTTAATATATAAGCCTTTTTGTTACCCCTCTGGCTCTC-T 52 * * * * * consensus_10919#0 AGCGCATGAATCTGTATGATCTTCCATA-ACAGCGGAAGAAGCAACAGGACA--GAGATG 886 consensus_10919#4 AGCGCATGAATCTGTATGATCTTCCATA-ACAGCGGAAGAAGCAACAGGACA--GAGATG 205 consensus_10919#1 TACATTTATAAGTGTATATGCTTCAATATATATATGCGTGTGTAACGGGTGG--AGGGGG 348 consensus_10919#2 TATCATTGTAATAATAATAATAATAATA---AGATTGGTAAGTAATAGGTAGTTAACCAA 381 consensus_10919#3 CTCTCTCATGCAAATATATACATAGATA--TACATATTTGTACAGTGTGTTGTTGTCCGG 110 ** *** * * * consensus_10919#0 TGAGGAAGCAAATGTTAAAAATGTGCCACTAACAGGCCATGTTGTTGTTAGAGGAGTTGA 946 consensus_10919#4 TGAGGAAGCAAATGTTAAAAATGTGCCACTAACAGGCCATGTTGTTGTTAGAGGAGTTGA 265 consensus_10919#1 GGAGTAAACAAACACTCCTACAATAATTCTGATAAAGATTTTTCCCCTCAAAAATATCTA 408 consensus_10919#2 TTCATTTTCAATCTGTTTTCCATTTATCCACCCCTTCACTCACTCACACACACATATATA 441 consensus_10919#3 ACTCGAAGCATGAGATTTGCTATTGTTCTATAC-----TTTCTCTCCATCTGTCTGTCTG 165 ** * * * * consensus_10919#0 GTTAACTGACTCATTT-GTATTA--GATGTTGAGTTTGGTAGACTGGATGTTGCATTAAC 1003 consensus_10919#4 GTTACCTGACTCATTT-GTATTA--GATGTTGAGTTTGGTAGACAGGATGTTGCATTAAC 322 consensus_10919#1 A--GACTTGCTCATTTCACAGCATCGACACGACGCACGATGAATAATTCGCCCAAAGTAG 466 consensus_10919#2 G---AGTTCCTCTTGT-GAACC-----CATGGTAACTCATGAGCA-TACACACAAGAAGG 491 consensus_10919#3 T-----CTGTCTGTTTGGAACCACTGCTAATTTAGTCCGTTTTAATTTTGTCTGATCTTT 220 * * * * * consensus_10919#0 AGGTGGTGTAT-GTACTAT----AGGTACAAG--CATTGCTGTTTGCTGT---TGAGTGG 1053 consensus_10919#4 AGGTGGTGTAT-GTACTAT----AGGTACAAG--CATTGCTGTTTGCTGT---TGAGTGG 372 consensus_10919#1 GATTGCTGAAGAGTAGTAG----TAGTATTAG--CAGTAGTAGTAGGCGTACCTAAATAT 520 consensus_10919#2 GTATAAAGTATAAGAGTCT----AAAAATTAAATCAACTACTTTAGCCAAATATGAATCC 547 consensus_10919#3 GTTTTTTTTTAATGAGTGTTTGAAAATACTAC-TGATCTATTTTATCTATGTGTATGTTT 279 * * * * * * * * * consensus_10919#0 GTGTAGATGAGGGACG-ACCTGGTA---AAACACCTGTAGCGTTAATTGGCCTATGATAA 1109 consensus_10919#4 GTGTAGATGAGGGACG-ACCTGGTA---AAACACCTGTAGCGTTCATTGGCCTATGATAA 428 consensus_10919#1 TTTTAG-CAAAGCATA-ATGCAGTACGGAGGCGGCAGTATACTCAACTTGTATGTGTGCA 578 consensus_10919#2 ATTGTGTTTATGTGAGTATTCATTC---AAATGATTGAACATTGAAC-AACAGGTATATA 603 consensus_10919#3 GTTTACACAAAATGCAGATATGTGACCAGAATAAAAAGAAACAGGACCCGATTATGTAAT 339 * * * * * * consensus_10919#0 TGTAATAACTGAGAAGGAGCTGTAGCCTCCGTAGAC-GATTGAAGTACCGATTGTT-GTT 1167 consensus_10919#4 TGTAATAACTGAGAAGGAGCTGTAGCCTCCGTAGAC-GATTGAAGTACCGATTG------ 481 consensus_10919#1 TATA-CGTTTGAATATGCACAAGTTTATTTATGATT-AGCAAAAATATAGAGAATA-ACT 635 consensus_10919#2 TTGACACATTGAATACATAGATATATACCTGTATTTGAGCAAGAGGATAGTACACATGAT 663 consensus_10919#3 TTCTTCTTTTATGTATGTG--TGTGTATTCACCAGT--GCCAGTGCTT-----------T 384 * * * consensus_10919#0 GACTAGACAAACTGGAGTGAGGAACGGAAACAGGAGGAGGAAAAATAACTGTTGCAGGAG 1227 consensus_10919#4 ------------------------------------------------------------ consensus_10919#1 AAATTGATGTAAAGGGTGGGGGTGTATAGCGCAGAAAAAAGAACTTTGATGGAGAAAAAA 695 consensus_10919#2 AGTATTAAGGAAATAGATTGAATTCATGTGTTTGTGAAAAAAA---------AGAAGGCA 714 consensus_10919#3 TTCTTCCTCTTTTGGCTTAGTTTCCTTATTTTTTTAAAAGAAA-----------AAACAA 433 consensus_10919#0 AATGACCACTGTGAATTGCTGCCTGATTGGGTGCTGTATTAGGAAATATAGTTGAACCAG 1287 consensus_10919#4 ------------------------------------------------------------ consensus_10919#1 AACATAATTAATCAACAACAACTTAGTTGCTGAGTGAAATCATAAATTCGTTAGCCAAAA 755 consensus_10919#2 ACCAATTTGAGTTCAT-ATATATAGATTGTTAATAATCACCATAG--TTATTATAAAATT 771 consensus_10919#3 ATTAACAGTATTCC-------TTTTTTTGGCTAACGAATTTATGATTTCACTCAGCAACT 486 consensus_10919#0 AAGTTAACAGTTGTGAAGC--CTGATGGCCATGAGTTGGTATATTAGTTGCAAACGCAAT 1345 consensus_10919#4 ------------------------------------------------------------ consensus_10919#1 AAAGGAATACTGTTAATTT--GTTTTTTCTTTTAAAAAAATAAGGAAACTAAGCCAAAAG 813 consensus_10919#2 AATTGAACTACGATAACCCTGGTAACAGCACTTAAAAGAAACAGGGGGGGGAACTATTAC 831 consensus_10919#3 AAGTTGTTGTTGATTAATTATGTTTTTTT------------------------------- 515 consensus_10919#0 ATGTGTTGCTTGCCCCGACTGCAAATGAACCTGATG-ACCCACTAAATGTGCAGCTGAAT 1404 consensus_10919#4 ------------------------------------------------------------ consensus_10919#1 AGGAAGAAAAAGCACTGGCACTGGTGAATACACACACATACATAAAAGAAGAAATTACAT 873 consensus_10919#2 ACAACTGATAAAAAC--AAAATGAAG-ATAGAAAGAAGAATGAATAACCAAAAAATACTC 888 consensus_10919#3 ------------------------------------------------------------ consensus_10919#0 GATGTGGATTAATAATTGTTCCCTGTGGGTGAGAAGTGGGAATAGAAGTTAGAGTAAACT 1464 consensus_10919#4 ------------------------------------------------------------ consensus_10919#1 AATCGGGTCCTGTTTCTTTTTATTCTGATTGTTAATTAGCGGT-GATGTGTGCACATGTG 932 consensus_10919#2 AATGATGTCTAGTTTACATGTATTGATAATGTGAATATACA-CAAACTAACACACACGTA 947 consensus_10919#3 ------------------------------------------------------------ consensus_10919#0 GTTGTCCAGGTTCTAGAGTGAGTCGAGGATCCAGCGGTTCCAAATAGACAGTATCTCC-A 1523 consensus_10919#4 ------------------------------------------------------------ consensus_10919#1 CTCATATGAGCGTTTCTCTATTTGTGTGTTTGTCTATACATCATGTAAACTAAATGCA-A 991 consensus_10919#2 CATACATAAGCAGCTTCATGTAAACATGAATGAGGAAGGGGGGAGGAGAGGAAAAAGACA 1007 consensus_10919#3 ------------------------------------------------------------ consensus_10919#0 CCAACAGAATTCAATATAAATCCACCATCAGGTCCAGCGGTAGCTAAAGTAGCAGTACAT 1583 consensus_10919#4 ------------------------------------------------------------ consensus_10919#1 CCTGGATGAATATGTAGATATAAGGAAACATTTTTTGCTTTTCCCCCTACATTATTTCAT 1051 consensus_10919#2 ACTGG--GAATAT-TGGTAATCAGATGATNTAAGCAGACGCTCGTGCCGAATTATTG--- 1061 consensus_10919#3 ------------------------------------------------------------ consensus_10919#0 GATCGATCCAATTCACCTGTTG-GTGTAACAAAAGCAACTGAAGTTTGTCTGAGCTGCTT 1642 consensus_10919#4 ------------------------------------------------------------ consensus_10919#1 CATTAATCCATATTGTGTATTGTATAANAAACAAACTAATATACTTTTTTTTTCTCATTT 1111 consensus_10919#2 ------------------------------------------------------------ consensus_10919#3 ------------------------------------------------------------ consensus_10919#0 CACCATGATGA--------------------- 1653 consensus_10919#4 -------------------------------- consensus_10919#1 TATTTCATTAATTTAAAACTTTTCGTTTATTA 1143 consensus_10919#2 -------------------------------- consensus_10919#3 -------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||