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Schistosoma mansoni
cluster # 10927 cluster # 10927       Sequences # 25       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10927#0 length = 1431 sequences # 24  
consensus_10927#1 length = 328 sequences # 1  

consensusID : consensus_10927#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 24
consensus length = 1431
fasta sequence
                              [ACGGGTTGTAGTTAACAAAATTGGAAACATTAGTTTTACAGGAGTATGGATCCGATAATGAATACAAGGCCGCTCAGAAAATATTTGAACAGGCGGATTAAAATAATTTAGTAAGAAGATATACTGTGAAATAAGCAAGATACCAGTAGGTAAAACATTTTTGCGTACAGATATTTTACAGAGTGCAGAAGTGAGTCAAGTTATAGATAAAGTCCTTCAGGTGTCCCTTCACTTTTTCGATAAAG-TACATTCTCTCTCGCCTTTTTGAAATCTTCATCAGTGACTTTCATCCTTCTTTCTCGTAGAGCTAGTAACCCAGCCTCAGTACAAATAGCCTTGATGTCAGCACCTGAAAGTTCATCTTTAGAAGTAACATATTCCTCCAAATTTACGTCCTCAGCTAAAGTCATGCGACTTGTATGAATACTGAAAATACGACGTTTTGTTTTTTCATCAGGTAGGGGAAATTCGATTTTACGATCGATTCGACCAGGTCTGATTAGCGCAGGGTCCAACGTTTCGATTCTGTTAGTGGCCATAATAACTTTCACATCTCCACGGGAATCAAAACCATCCAGTTGATTAAGTAGTTCTAACATTGTCCTCTGTATTTCGCGTTCACCACCTGAATTCGATTCATACCTCTTCGTTCCTACCGCATCGATCTCGTCAATAAATACAATACTAGGCGCATTTTCCTCTGCCAACCGGAACAGCTCACGAACCAATTTTGGACCATCACCCAAATACTTTTGGATTAATTCTGACCCGACAACCCGAAGGAAGGTAGCTGATGTTTGGTTAGCAACAGCCTTAGCTAGTAATGTTTTGCCTGTCCCCGGTGCACCATACAAAATTACGCCTTTGGGGGGTCTAATACCCATTTCCTCATAAAGCTCTGGGTGAGTTAAAGGTAGTTCAACTGATTCTTTAATCTCTTGAATTTGTACGTCGAGTCCGCCAATATCAGCGTATGTTTCCTGTGGAGCCTTTTCTAACTTCATAACTGTAACCATAGGATCGGTTTCGTCTGTCAGGACACCAACAACAGCATGAACTTTGTGGTTTAACAAGACAGAACACCCAGGTTCAAGCATACCCTTGTCTACGAAGGAAAGAATGCTGACATAGTGCTCGCTACCAACGGAGGTGGATACCACAACGTGATTGTCGTCGATAATTTCTTCCAACGTCCCCACGGACATTGGAGTGCCACGCAAATCATCAACTTTTGATCGTTCCTCCTCATGACGCTCTTCATCCGTTTTAAGACGCTCCTGATTTTTGATAAACTCTTCTTCCATAAGTAGAAAATCCTTGATTCTCTCCATTTTTAATAATCGAAGTTTACAACGTGTATGAGGTGTGACTTGAGGTAGTTTGTTGGCACTATCTGGCCCTTTTGATCGTTTGTGTTTACCCATTCTGGTA]

[-] EMBL CD115070             [ACGGGTTGTAGTTAACAAAATTGGAAACATTAGTTTTACAGGAGTATGGACCCGATAATGAATACAAGGCCGCTCAGAAAATATTTGAACAGGCGGATTAAAATAATTTAGTAAGAAGATATACTGTGAAATAAGCAAGATACCAGTAGGTAAAACATTTTTGCGTACAGATATTTTACAGAGTGCAGAAGTGAGTCAAGTTATAGATAAAGTCCTTCAGGTGTCCCTTCACTTTTTCGATAAAG TACATTCTCTCTCGCCTTTTTGAAATCTTCATCAGTGACTTTCATCCTTCTTTCTCGTAGAGCTAGTAACCCAGCCTCAGTACAAATAGCCTTGATGTCAGCACCTGAAAGTACATCTTTAGAAGTAACATATTCCTCCAAATTTACGTCCTCAGCTAAAGTCATGCGACTTGTATGAATACTGAAAATACGACGTTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD114961             [ACGGGTTGTAGTTAACAAAATTGGAAACATTAGTTTTACAGGAGTATGGATCCGATAATGAATACAAGGCCGCTCAGAAAATATTTGAACAGGCGGATTAAAATAATTTAGTAAGAAGATATACTGTGAAATAAGCAAGATACCAGTAGGTAAAACATTTTTGCGTACAGATATTTTACAGAGTGCAGAAGTGAGTCAAGTTATAGATAAAGTCCTTCAGGTGTCCCTTCACTTTTTCGATAAAG TACATTCTCTCTCGCCTTTTTGAAATCTTCATCAGTGACTTTCATCCTTCTTTCTCGTAGAGCTAGTAACCCAGCCTCAGTACAAATAGCCTTGATGTCAGCACCTGAAAGTTCATCTTTAGAAGTAACATATTCCTCCAAATTTACGTCCTCAGCTAAAGTCATGCGACTTGTATGAATACTGAAAATACGACGTTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD144971             [ CGGGTTGTAGTTAACAAAATTGGAAACATTAGTTTTACAGGAGTATGGATCCGATAATGAATACAAGGCCGCTCAGAAAATATTTGAACAGGCGGATTAAAATAATTTAGTAAGAAGATATACTGTGAAATAAGCAAGATACCAGTAGGTAAAACATTTTTGCGTACAGATATTTTACAGAGTGCAGAAGTGAGTCAAGTTATAGATAAAGTCCTTCAGGTGTCCCTTCACTTTTTCGATAAAG TACATTCTCTCTCGCCTTTTTGAAATCTTCATCAGTGACTTTCATCCTTCTTTCTCGTAGAGCTAGTAACCCAGCCTCAGTACAAATAGCCTTGATGTTAGCACCTGAAAGTTCATCTTTAGAAGTAACATATTCCTCCAAATTTACGTCCTCAGCTAAAGTCATGCGACTTGTATGAATACTGAAAATACGACGTTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD155748             [                                                     GATAATGAATACAAGGCCGCTCAGAAAATATTTGAACAGGCGGATTAAAATAATTTAGTAAGAAGATATACTGTGAAATAAGCAAGATACCAGTAGGTAAAACATTTTTGCGTACAGATATTTTACAGAGTGCAGAAGTGAGTCAAGTTATAGATAAAGTCCTTCAGGTGTCCCTTCACTTTTTCGATAAAG TACATTCTCTCTCGCCTTTTTGAAATCTTCATCAGTGACTTTCATCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AI975566             [                                                                                                            TAGTAAGAAGATATACTGTGAAATAAGCAAGATACCAGTAGGTAAAACATTTTTGCGTACAGATTTTTTACAGAGTGCAGAAGTGAGTCAAGTTATAGATAAAGTCCTTCAGGTGTCCCTTCACTTTTTCGATAAAG TACATTCTCTCTCGCCTTTTTGAAATCTTCATCAGAGACTTTCATCCTTCTTTCTCGTAGAGCTAGTAACCCAGCCTCAGTACAAATAGCCTTGATGTCAGCACCTGAAAGTTCATTTTTAGAAGTAACATATTCCTCCAAATTTACATCCTTAGCTAAAGTCATGCCACTTGTATGAATACTGAAAATACGACGTTTTGTTTTTTCATCACGTAGGGGAAATTCGATTTTACGATCGATTCGACCAGGTCTGATTAGCGCAGGGTCCAACGTTTCGATTCTGTTAGTGGCCATAATAACTTTCACATCTTCACGGGAATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD146874             [                                                                                                                                                                                         CAGGAGTGAGTCAAGTTATAGATAAAGTCCTTCAGGTGTCCCTTCACTTTTTCTATAAAGCTACATTCTCTCTCGCCTTTTTGAAATCTTCATCATTGt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CD113549             [                                                                                                                                                                                               TGAGTCAAGTTATAGATAAAGTCCTTCAGGTGTCCCTTCACTTTTTCGATAAAG TACATTCTCTCTCGCCTTTTTGAAATCTTCATCAGTGACTTTCATCCTTCTTTCTCGTAGAGCTAGTAACCCAGCCTCAGTACAAATAGCCTTGATGTCAGCACCTGAAAGTTCATCTTTAGAAGTAACATATTCCTCCAAATTTACGTCCTCAGCTAAAGTCATGCGACTTGTATGAATACTGAAAATACGACGTTTTGTTTTTTCATCAGGTAGGGGAAATTCGATTTTACGATCGATTCGACCAGGTCTGATTAGCGCAGGGTCCAACGTTTCGATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD113625             [                                                                                                                                                                                               TGAGTCAAGTTATATATAAAGTCCTTCAGGTGTCCCTTCACTTTTTCGATAAAG TACATTCTCTCTCGCCTTTTTGAAATCTTCATCAGTGACTTTCATCCTTCTTTCTCGTAGAGCTATTAACCCAGCCTCAGTACAAATAGCCTTGATGTCAGCACCTGAAAGTGCATCTTTACAAGTAACATATTCCTCCAAATTTACGTGCTCAGCTAAAGTCATGCGACTTGTATGAATACTGAAAATACGACGTTTTGTTTTTTCATCAGGTAGGGGAAATTCGATTTTACGATCGATTCGACCAGGTCTGATTATCGCAGGGTCCAACGTTTCGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD201754             [                                                                                                                                                                                                 AGTCAAGTTATAGATAAAGTCCTTCAGGTGTCCCTTCACTTTTTCGATAAAG TACATTCTCTCTCGCCTTTTTGAAATCTTCATCAGTGACTTTCATCCTTCTTTCTCGTAGAGCTAGTAACCCAGCCTCAGTACAAATAGCCTTGATGTCAGCACCTGAAAGTTCATCTTTAGAAGTAACATATTCCTCCAAATTTACGTCCTCAGCTAAAGTCATGCGACTTGTATGAATACTGAAAATACGACGTTTTGTTTTTTCATCAGGTAGGGGAAATTCGATTTTACGATCGATTCGACCAGGTCTGATTAGCGCAGGGTCCAACGTTTCGATTCTGTTAGTGGCCATAATAACTTTCACATCTCCACGGGAATCAAAACCATCCAGTTGATTAAGTAGTTCTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD145059             [                                                                                                                                                                                                 AGTCAAGTTATAGATAAAGTCCTTCAGGTGTCCCTTCACTTTTTCGATAAAG TACATTCTCTCTCGCCTTTTTGAAATCTTCATCAGTGACTTTCATCCTTCTTTCTCGTAGAGCTAGTAACCCAGCCTCAGTACAAATAGCCTTGATGTCAGCACCTGAAAGTTCATCTTTAGAAGTAACATATTCCTCCAAATTTACGTCCTCAGCTAAAGTCATGCGACTTGTATGAATACTGAAAATACGACGTTTTGTTTTTTCATCAGGTAGGGGAAATTCGATTTTACGATCGATTCGACCAGGTCTGATTAGCGCAGGGTCCAACGTTTCGATTCTGTTAGTGGCCATAATAACTTTCACATCTCCACGGGAATCAAAACCATCCAGTTGATTAAGTAGTTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD145018             [                                                                                                                                                                                                 AGTCAAGTTATAGATAAAGTCCTTCAGGTGTCCCTTCACTTTTTCGATAAAG TACATTCTCTCTCGCCTTTTTGAAATCTTCATCAGTGACTTTCATCCTTCTTTCTCGTAGAGCTAGTAACCCAGCCTCAGTACAAATAGCCTTGATGTCAGCACCTGAAAGTTCATCTTTAGAAGTAACATATTCCTCCAAATTTACGTCCTCAGCTAAAGTCATGCGACTTGTATGAATACTGAAAATACGACGTTTTGTTTTTTCATCAGGTAGGGGAAATTCGATTTTACGATCGATTCGACCAGGTCTGATTAGCGCAGGGTCCAACGTTTCGATTCTGTTAGTGGCCATAATAACTTTCACATCTCCACGGGAATCAAAACCATCCAGTTGATTAAGTAGTTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL AW017126             [                                                                                                                                                                                                              ATAAAGTCTTTCAGGTGTCCTTTCACTTTTTCGATAAAG TACATTCTCTCTCGCCTTTTTGAAATCTTCATCAGTGACTTTCATCTTTCTTTCTCGTAGAGCTAGTAACCCAGCCTCAGTACAAATAGCCTTGATGTCAGCACCTGAAAGTTCATCTTTAGAAGTAACATATTCCTCCAAATTTACATCCTCAGCTAAAGTCATGCGACTTGTATGAATACTGAAAATACGACGTTTTGTTTTTTCATCAGGTAGGGGAAATTCGATTTTACGATCGATTCGACCAGGTCTGATTAGCGCAGGGTCCAACGTTTCGATTCTGTTAGTGGCCATAATAACTTTCACATCTCCACGGGAATCAAAACCATCCAGTTGATTAAGTAATTCTAACATTGTCCTCTGTATTTCGCGTTCACCACCTGAATTCGATTCATACCTCTTCGTTCCTACCGCATCGATCTCGTCAATAAATACAATACTAGGTGCATTTTCCTCTGCCAACCGGAACAGCTCACGAACCAATTTTGGACCATCACCCAAATACTTTTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD134179             [                                                                                                                                                                                                                                                                                                                                              GCCTTGATGTCAGCACCTGAAAGTTCATCTTTAGAAGTAACATATTCCTCCAAATTTACGTCCTCAGCTAAAGTCATGCGACTTGTATGAATACTGAAAATACGACGTTTTGTTTTTTCATCAGGTAGGGGAAATTCGATTTTACGATCGATTCGACCAGGTCTGATTAGCGCAGGGTCCAACGTTTCGATTCTGTTAGTGGCCATAATAACTTTCACATCTCCACGGGAATCAAAACCATCCAGTTGATTAAGTAGTTCTAACATTGTCCTCTGTATTTCGCGTTCACCACCTGAATTCGATTCATACCTCTTCGTTCCTACCGCATCGATCTCGTCAATAAATACAATACTAGGCGCATTTTCCTCTGCCAACCGGAACAGCTCACGAACCAATTTTGGACCATCACCCAAATACTTTTGGATTAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD113934             [                                                                                                                                                                                                                                                                                                                                                                                                                                                             GTTTTTTCATCAGGTAGGGGAAATTCGATTTTACGATCGATTCGACCAGGTCTGATTAGCGCAGGGTCCAACGTTTCGATTCTGTTAGTGGCCATAATAACTTTCACATCTCCACGGGAATCAAAACCATCCAGTTGATTAAGTAGTTCTAACATTGTCCTCTGTATTTCGCGTTCACCACCTGAATTCGATTCATACCTCTTCGTTCCTACCGCATCGATCTCGTCAATAAATACAATACTAGGCGCATTTTCCTCTGCCAACCGGAACAGCTCACGAACCAATTTTGGACCATCACCCAAATACTTTTGGATTAATTCTGACCCGACAACCCGAAGGAAGGTAGCTGATGTTTGGTTAGCAACAGCCTTAGCTAGTAATGTTTTGCCTGTCCCCGGTGCACCATACAAAATTACGCCTTTGGGGGGTCTAATACCCATTTCCTCATAAAGCTCTGGGTGAGTTAAAGGTAGTTCAACTGATTCTTTAATCTCTTGAATTTGTACGTCGAGTCCGCCAATATCAGCGTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL BG930266             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GTCTGATTAGCGCAGGGTCCAACGTTTCGATTCTGTTAGTGGCCATAATAACTTTCACATCTCCACGGGAATC AAACCATCCAGTTGATTAAGTAGTTCTAACATTGTCCTCTGTATTTCGCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CD143004             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CTNCACGGGAATCAAANCCATCCAGTNGATTAAGTAGTTCTAACATTGTCCTCTGTATTTCGCGTTCACCACCTGAATTCGATTCATACCTCTTCGTTCCTACCGCATCGATCTCGTCAATAAATACAATACTAGGCGCATTTTCCTCTGCCAACCGGAACAGCTCACGAACCAATTTTGGACCATCACCCAAATACTTTTGGATTAATTCTGACCCGACAACCCGAAGGAAGGTAGCTGATGTTTGGTTAGCAACAGCCTTAGCTAGTAATGTTTTGCCTGTCCCCGGTGCACCATACAAAATTACGCCTTTGGGGGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD090599             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CTGAATTCGATTCATACCTCTTCGTTCCTACCGCATCGATCTCGTCAATAAATACAATACTAGGCGCATTTTCCTCTGCCAACCGGAACAGCTCACGAACCAATTTTGGACCATCACCCAAATACTTTTGGATTAATTCTGACCCGACAACCCGAAGGAAGGTAGCTGATGTTTGGTTAGCAACAGCCTTAGCTAGTAATGTTTTGCCTGTCCCCGGTGCACCATACAAAATTACGCCTTTGGGGGGTCTAATACCCATTTCCTCATAAAGCTCTGGGTGAGTTAAAGGTAGTTCAACTGATTCTTTAATCTCTTGAATTcgcgaagt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BG931747             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              tATAGCACTGCGATCCAACCGGATCTATCTCGTCAATAAATACAATACTACGCGCATATTCCTCTGCCAAGCGGAACAGTTCACGAACCAATTTTGGACCATCACCCATATACTTTGGGATTAATTCTGACCCGACAACCCGAAGGAAGGTAGCTGATGTTTGGTTAGCAACAGCCTTAGCTAGTAATGTTTTGCCTGTCCCCGGTGCACCATACAAAATTACGCCTTTGGGGGGTCTAATACCCATTTCCTCATGAAGCTCTGGGTGAGTTAAAGGTAGTTCAACTGATTCTTTAATCTCTTGAATTTGTACGTCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD124972             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ACCTCTTCGTTCCTACCGCATCGATCTCGTCAATAAATACAATACTAGGCGCATTTTCCTCTGCCAACCGGAACAGCTCACGAACCAATTTTGGACCATCACCCAAATACTTTTGGATTAATTCTGACCCGACAACCCGAAGGAAGGTAGCTGATGTTTGGTTAGCAACAGCCTTAGCTAGTAATGTTTTGCCTGTCCCCGGTGCACCATACAAAATTACGCCTTTGGGGGGTCTAATACCCATTTCCTCATAAAGCTCTGGGTGAGTTAAAGGTAGTTCAACTGATTCTTTAATCTCTTGAATTTGTACGTCGAGTCCGCCAATATCAGCGTATGTTTCCTGTGGAGCCTTTTCTAACTTCATAACTGTAACCATAGGATCGGTTTCGTCTGTCAGGACACCAACAACAGCATGAACTTTGTGGTTTAACAAGACAGAACACCCAGGTTCAAGCATACCCTTGTCTACGAAGGAAAGAATGCTGACATAGTGCTCGCTACCAACGGAGGTGGATACCACAAC                                                                                                                                                                                                                                                                            ]
[-] EMBL CD153642             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AACAGCTCACGAACCAATTTTGGACCATCACCCAAATACTTTTGGATTAATTCTGACCCGACAACCCGAAGGAAGGTAGCTGATGTTTGGTTAGCAACAGCCTTAGCTAGTAATGTTTTGCCTGTCCCTGGTGCACCATACAAAATTACGCCTTTGGGGGGTCTAATACCCATTTCCTCATAAAGCTCTGGGTGAGTTAAAGGTAGTTCGACTGATTCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD124277             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     anAATTACGCCTTTGGGGGGTCTAATACCCATTTCCTCATANAGCTCTGGGTGAGTTAAAGGTAGTTCAACTGATTCTCTAATCTCTTGAATTTGTACGTCGAGTCCGCCAATATCAGCGTATGTTTCCTGTGGAGCCTTTTCTAACTTCATAACTGTAACCATAGGATCGGTTTCGTCTGTCAGGACACCAACAACAGCATGAACTTTGTGGTTTAACAAGACAGAACACCCAGGTTCAAGCATACCCTTGTCTACGAAGGAAAGAATGCTGACATAGTGCTCGCTACCAACGGAGGTGGATACCACAACGTGATTGTCGTCGATAATTTCTTCCAACGTCCCCACGGACATTGGAGTGCCACGCAAATCATCAACTTTTGATCGTTCCTCCTCATGACGCTCTTCATCCGTTTTAAGACGCTCCTGATTTTTGATAAACTCTTCTTCCATAAGTAGAAAATCCTTGATTCTCTCCATTTTTAATAATCGAAGTTTACAACGTGCATGAGGTGTGACTTGAGGTAGTTTGTTGGCACTATCTGGCCCTTTTGATCGTTTGTGTTTACCCATTC     ]
[+] EMBL CD124968             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ATACCCATTTCCTCATAAAGCTCTGGGTGAGTTAAAGGTAGTTCAACTGATTCTTTAATCTCTTGAATTTGTACGTCGAGTCCGCCAATATCAGCGTATGTTTCCTGTGGAGCCTTTTCTAACTTCATAACTGTAACCATAGGATCGGTTTCGTCTGTCAGGACACCAACAACAGCATGAACTTTGTGGTTTAACAAGACAGAACACCCAGGTTCAAGCATACCCTTGTCTACGAAGGAAAGAATGCTGACATAGTGCTCGCTACCAACGGAGGTGGATACCACAACGTGATTGTCGTCGATAATTTCTTCCAACGTCCCCACGGACATTGGAGTGCCACGCAAATCATCAACTTCTGATCGTTCCTCCTCATGACGCTCTTCATCCGTTTTAAGACGCTCCTGATTTTTGATAAACTCTTCTTCCATAAGTAGAAAATCCTTGATTCTCTCCATTTTTAATAATCGAAGTTTACAACGTGTATGAGGTGTGACTTGAGGTAGTTTGTTGGCACTATCTGGCCCTTTTGATCGTTTGTGTTTACCCACTCTGGTA]
[+] EMBL CD118469             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TTCCTGTGGAGCCTTTTCTAACTTCATAACTGTAACCATAGGATCGGTTTCGTCTGTCAGGACACCAACAACAGCATGAACTTTGTGGTTTAACAAGACAGAACACCCAGGTTCAAGCATACCCTTGTCTACGAAGGAAAGAATGCTGACATAGTGCTCGCTACCAACGGAGGTGGATACCACAACGTGATTGTCGTCGATAATTTCTTCCAACGTCCCCACGGACATTGGAATGCCACGCAAATCATCAACTTTTGATCGTTCCTCCTCATGACGCTCTTCATCCGTTTTAAGACGCTCCTGATTTTTGATAAACTCTTCTTCCATAAGTAGAAAATCCTTGATTCTCTCCATTTTTAATAATCGAAGTTTACAACGTGTATGAGGTGTGACTTGAGGTAGTTTGTTGGCACTATCTGGCCCTTTTGATCGTTTGTGTTTACCC         ]
[-] EMBL AA559606             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     nGAAGGAAAGGATGCTGACATAGTGCTCGCTACCAACGGTGGTGGNTACCACNACGTGATTGTNGTCGATAATTTCNTCCAACGTCCCCACGGACATTGGAGTGCCACGCAAATCATCAACTTTNGATNGTTCCTC                                                                                                                                                                                           ]


>consensus_10927#0 ACGGGTTGTAGTTAACAAAATTGGAAACATTAGTTTTACAGGAGTATGGATCCGATAATG AATACAAGGCCGCTCAGAAAATATTTGAACAGGCGGATTAAAATAATTTAGTAAGAAGAT ATACTGTGAAATAAGCAAGATACCAGTAGGTAAAACATTTTTGCGTACAGATATTTTACA GAGTGCAGAAGTGAGTCAAGTTATAGATAAAGTCCTTCAGGTGTCCCTTCACTTTTTCGA TAAAGTACATTCTCTCTCGCCTTTTTGAAATCTTCATCAGTGACTTTCATCCTTCTTTCT CGTAGAGCTAGTAACCCAGCCTCAGTACAAATAGCCTTGATGTCAGCACCTGAAAGTTCA TCTTTAGAAGTAACATATTCCTCCAAATTTACGTCCTCAGCTAAAGTCATGCGACTTGTA TGAATACTGAAAATACGACGTTTTGTTTTTTCATCAGGTAGGGGAAATTCGATTTTACGA TCGATTCGACCAGGTCTGATTAGCGCAGGGTCCAACGTTTCGATTCTGTTAGTGGCCATA ATAACTTTCACATCTCCACGGGAATCAAAACCATCCAGTTGATTAAGTAGTTCTAACATT GTCCTCTGTATTTCGCGTTCACCACCTGAATTCGATTCATACCTCTTCGTTCCTACCGCA TCGATCTCGTCAATAAATACAATACTAGGCGCATTTTCCTCTGCCAACCGGAACAGCTCA CGAACCAATTTTGGACCATCACCCAAATACTTTTGGATTAATTCTGACCCGACAACCCGA AGGAAGGTAGCTGATGTTTGGTTAGCAACAGCCTTAGCTAGTAATGTTTTGCCTGTCCCC GGTGCACCATACAAAATTACGCCTTTGGGGGGTCTAATACCCATTTCCTCATAAAGCTCT GGGTGAGTTAAAGGTAGTTCAACTGATTCTTTAATCTCTTGAATTTGTACGTCGAGTCCG CCAATATCAGCGTATGTTTCCTGTGGAGCCTTTTCTAACTTCATAACTGTAACCATAGGA TCGGTTTCGTCTGTCAGGACACCAACAACAGCATGAACTTTGTGGTTTAACAAGACAGAA CACCCAGGTTCAAGCATACCCTTGTCTACGAAGGAAAGAATGCTGACATAGTGCTCGCTA CCAACGGAGGTGGATACCACAACGTGATTGTCGTCGATAATTTCTTCCAACGTCCCCACG GACATTGGAGTGCCACGCAAATCATCAACTTTTGATCGTTCCTCCTCATGACGCTCTTCA TCCGTTTTAAGACGCTCCTGATTTTTGATAAACTCTTCTTCCATAAGTAGAAAATCCTTG ATTCTCTCCATTTTTAATAATCGAAGTTTACAACGTGTATGAGGTGTGACTTGAGGTAGT TTGTTGGCACTATCTGGCCCTTTTGATCGTTTGTGTTTACCCATTCTGGTA



consensusID : consensus_10927#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 328
fasta sequence
                              [GGTAGTTCAACTGATTCTTTAATCTCTTGAATTTGTACGTCGAGTCCGCCAATATCAGCGTATGTTTCCTGTGGAGCCTTTTCTAACTTCATAACTGTAACCATAGGATCGGTTACATATATTTTCTTCTATTTCCCCGTACTAAAGGTTCCATAAAGACTGTCTTACATCCGATGAAATTCCACCCAAATTATTAAGTCAACATACTCATATACCACCCCTACTAAACGTTCAGATGTCTAGGATTGGTAATGAGATTTTTTTCAAAGAAATGACTTATCCCAGCTCGTTATTTGAATAGTGCGGGTACGGATTACTGCACTTTTAA]

[+] EMBL CD185986             [GGTAGTTCAACTGATTCTTTAATCTCTTGAATTTGTACGTCGAGTCCGCCAATATCAGCGTATGTTTCCTGTGGAGCCTTTTCTAACTTCATAACTGTAACCATAGGATCGGTTACATATATTTTCTTCTATTTCCCCGTACTAAAGGTTCCATAAAGACTGTCTTACATCCGATGAAATTCCACCCAAATTATTAAGTCAACATACTCATATACCACCCCTACTAAACGTTCAGATGTCTAGGATTGGTAATGAGATTTTTTTCAAAGAAATGACTTATCCCAGCTCGTTATTTGAATAGTGCGGGTACGGATTACTGCACTTTTAA]


>consensus_10927#1 GGTAGTTCAACTGATTCTTTAATCTCTTGAATTTGTACGTCGAGTCCGCCAATATCAGCG TATGTTTCCTGTGGAGCCTTTTCTAACTTCATAACTGTAACCATAGGATCGGTTACATAT ATTTTCTTCTATTTCCCCGTACTAAAGGTTCCATAAAGACTGTCTTACATCCGATGAAAT TCCACCCAAATTATTAAGTCAACATACTCATATACCACCCCTACTAAACGTTCAGATGTC TAGGATTGGTAATGAGATTTTTTTCAAAGAAATGACTTATCCCAGCTCGTTATTTGAATA GTGCGGGTACGGATTACTGCACTTTTAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10927#0      ACGGGTTGTAGTTAACAAAATTGGAAACATTAGTTTTACAGGAGTATGGATCCGATAATG 60
consensus_10927#1      ------------------------------------------------------------
                                                                                   

consensus_10927#0      AATACAAGGCCGCTCAGAAAATATTTGAACAGGCGGATTAAAATAATTTAGTAAGAAGAT 120
consensus_10927#1      ------------------------------------------------------------
                                                                                   

consensus_10927#0      ATACTGTGAAATAAGCAAGATACCAGTAGGTAAAACATTTTTGCGTACAGATATTTTACA 180
consensus_10927#1      ------------------------------------------------------------
                                                                                   

consensus_10927#0      GAGTGCAGAAGTGAGTCAAGTTATAGATAAAGTCCTTCAGGTGTCCCTTCACTTTTTCGA 240
consensus_10927#1      ------------------------------------------------------------
                                                                                   

consensus_10927#0      TAAAGTACATTCTCTCTCGCCTTTTTGAAATCTTCATCAGTGACTTTCATCCTTCTTTCT 300
consensus_10927#1      ------------------------------------------------------------
                                                                                   

consensus_10927#0      CGTAGAGCTAGTAACCCAGCCTCAGTACAAATAGCCTTGATGTCAGCACCTGAAAGTTCA 360
consensus_10927#1      ------------------------------------------------------------
                                                                                   

consensus_10927#0      TCTTTAGAAGTAACATATTCCTCCAAATTTACGTCCTCAGCTAAAGTCATGCGACTTGTA 420
consensus_10927#1      ------------------------------------------------------------
                                                                                   

consensus_10927#0      TGAATACTGAAAATACGACGTTTTGTTTTTTCATCAGGTAGGGGAAATTCGATTTTACGA 480
consensus_10927#1      ------------------------------------------------------------
                                                                                   

consensus_10927#0      TCGATTCGACCAGGTCTGATTAGCGCAGGGTCCAACGTTTCGATTCTGTTAGTGGCCATA 540
consensus_10927#1      ------------------------------------------------------------
                                                                                   

consensus_10927#0      ATAACTTTCACATCTCCACGGGAATCAAAACCATCCAGTTGATTAAGTAGTTCTAACATT 600
consensus_10927#1      ------------------------------------------------------------
                                                                                   

consensus_10927#0      GTCCTCTGTATTTCGCGTTCACCACCTGAATTCGATTCATACCTCTTCGTTCCTACCGCA 660
consensus_10927#1      ------------------------------------------------------------
                                                                                   

consensus_10927#0      TCGATCTCGTCAATAAATACAATACTAGGCGCATTTTCCTCTGCCAACCGGAACAGCTCA 720
consensus_10927#1      ------------------------------------------------------------
                                                                                   

consensus_10927#0      CGAACCAATTTTGGACCATCACCCAAATACTTTTGGATTAATTCTGACCCGACAACCCGA 780
consensus_10927#1      ------------------------------------------------------------
                                                                                   

consensus_10927#0      AGGAAGGTAGCTGATGTTTGGTTAGCAACAGCCTTAGCTAGTAATGTTTTGCCTGTCCCC 840
consensus_10927#1      ------------------------------------------------------------
                                                                                   

consensus_10927#0      GGTGCACCATACAAAATTACGCCTTTGGGGGGTCTAATACCCATTTCCTCATAAAGCTCT 900
consensus_10927#1      ------------------------------------------------------------
                                                                                   

consensus_10927#0      GGGTGAGTTAAAGGTAGTTCAACTGATTCTTTAATCTCTTGAATTTGTACGTCGAGTCCG 960
consensus_10927#1      ------------GGTAGTTCAACTGATTCTTTAATCTCTTGAATTTGTACGTCGAGTCCG 48
                                   ************************************************

consensus_10927#0      CCAATATCAGCGTATGTTTCCTGTGGAGCCTTTTCTAACTTCATAACTGTAACCATAGGA 1020
consensus_10927#1      CCAATATCAGCGTATGTTTCCTGTGGAGCCTTTTCTAACTTCATAACTGTAACCATAGGA 108
                       ************************************************************

consensus_10927#0      TCGGTTTCGTCTGTCAGGACACCAACAACAGCATGAACTTTGTGGTTTAACAAGACAGAA 1080
consensus_10927#1      TCGGTTACATATATT----TTCTTCTATTTCCCCGTACTAAAGGTTCCATAAAGACTGTC 164
                       ****** * * * *       *    *    *  * ***    * *  *  ***** *  

consensus_10927#0      C-ACCCAGGTTCAAGCATACCCTTGTCTACGAAGGAAAGAATGCTGACATAGTGCTCGCT 1139
consensus_10927#1      TTACATCCGATGAAATTCCACCCAAATTATTAAGTCAACA-TACTCATATACCACCC-CT 222
                         **    * * **      **     **  ***  ** * * ** * ***   * * **

consensus_10927#0      ACCAACGGAGGTGGATACCACAACGTGATTGTCGTCGATAATTTCTTCCAACGTCCCCAC 1199
consensus_10927#1      ACTAAACGTT-CAGATGTC----TAGGATTGGTAATGA-GATTTTTTTCAAAGAAATGAC 276
                       ** **  *     ***  *       *****     **  **** ** *** *     **

consensus_10927#0      GGACATTGGAGTGCCACGCAAATCAT-CAACTTTTGATCGTTCCTCCTCATGACGCTCTT 1258
consensus_10927#1      TTATCCCAGCTCGTTATTTGAATAGTGCGGGTACGGATTACTGCACTTT-TAA------- 328
                         *     *   *  *    ***  * *   *   ***   * * * *  * *       

consensus_10927#0      CATCCGTTTTAAGACGCTCCTGATTTTTGATAAACTCTTCTTCCATAAGTAGAAAATCCT 1318
consensus_10927#1      ------------------------------------------------------------
                                                                                   

consensus_10927#0      TGATTCTCTCCATTTTTAATAATCGAAGTTTACAACGTGTATGAGGTGTGACTTGAGGTA 1378
consensus_10927#1      ------------------------------------------------------------
                                                                                   

consensus_10927#0      GTTTGTTGGCACTATCTGGCCCTTTTGATCGTTTGTGTTTACCCATTCTGGTA 1431
consensus_10927#1      -----------------------------------------------------
                                                                            




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)