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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10964#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 960 fasta sequence
[CAATTCATTACTTTATTTTTAGTTTGATTTGTCTCAGTCATGAGAGACTACTAGGAATTAATCATATCGTTCATTGAAAAGATCTATGTATTGTTTGCGATGTATAAATAGTAGATCTTATTATTTATCAATAATGTGTGAAGATCAAAATGAATCAATAAATTATAATTTTAACATGAAAATCGATATTATTTTTATTATAGTCAAAAAGAAATTATATTTGTAAAATTGTTGAAATGTTTTATGCTCGAACATCCTCACTTCTCTGTTTTCTGGTATCGTTAGAGCTAAGCTTAAATTCAAATTCCTTGTTCTTATCTGAATGTTTGTTTTCACTCCTTTTTACATTTAAAGCTGAAGAAGCTTGTTGTTCAGCTCCAACTTGGATATAAGCATGAGTACCATTCGCTTGATAAT-CA-CCAGTTCGTTT-ATATTTACGTTC-TTCAATTAAA-CCACCTTGAATATCGAATTGATTATCAACAATTTTTTTAGAATATTTTTTCTCTTTT-CCACGAGTTTTGAATTTCGAGTTAGTAGGTCTCTTTCGACCATATCTATCGAATTTGCCTTCAATTACATAATATGTAGATTCTGATGATACGATACCGTGTCTACCGAGTCCACG-TGAACGGAATTTGCCTTTAGCTTTGAGATGTCCATATTTTTTGTGTTTATATTGAGATCTAGAATGACCACTCATTTTAGATGCCTCTAAACCATTTTGTCTAGATCCGCTTTGGTCAAAGTTTAACTCCTTACTTTTACTATTTTTTCTACTATTTGAGTTACTGAG-TTTTGATCCAGCGTTGTGATTAGTTTCGGTCTTCTGTTCAAAACCG-AATTGCACTCCTACAACTGTTATTACAGATATCAGAAAAATTAGAATTATTAGTTTCATTTTAATATCCATATACAAATTCTCTTATAAGTAATAATTTACGCCTCGTGCCGATTCTGGCC]
[+] EMBL CD129495 [CAATTCATTACTTTATTTTTAGTTTGATTTGTCTCAGTCATGAGAGACTACTAGGAATTAATCATATCGTTCATTGAAAAGATCTATGTATTGTTTGCGATGTATAAATAGTAGATCTTATTATTTATCAATAATGTGTGAAGATCAAAATGAATCAATAAATTATAATTTTAACATGAAAATCGATATTATTTTTATTATAGTCAAAAAGAAATTATATTTGTAAAATTGTTGAAATGTTTTATGCTCGAACATCCTCACTTCTCTGTTTTCTGGTATCGTTAGAGCTAAGCTTAAATTCAAATTCCTTGTTCTTATCTGAATGTTTGTTTTCACTCCTTTTTACATTTAAAGCTGAAGAAGCTTGTTGTTCAGCTCCAACTTGGATATAAGCATGAGTACCATTCGCTTGATAAT CA CCAGTTCGTTT ATATTTACGTTC TTCAATTAAA CCACCTTGAATATCGAATTGATTATCAACAATTTTTTTA ]
[-] EMBL AI110930 [ ATTTTAACATGAAAATCGATATTATTTTTATAATAGTCAAAAAGAAATTANATTTGTAAAATNGTTGAAATGTTTAATGCTCGAANATCCTCACTTCTCTGTTTTCTGGNATCGTTAGAGCTAAGCTTAAATTCAAATTCCTTGTTCTTATCTGAATGTTNGTTTTCACTCCTTTTNACATTTAAAGCTGAAGAAGCTTGTTGTTCAGCTCCAACTTGGANATAAGCATGAGTACCATTCGCTTGATAAT CACCCAGTTCGTTT ATATTAACGTTN TTCAATTAAA CCACCTTGAATATCGAATTGATTATCAACAATTTTTTTAGAANATTTTTTCTCTTTT CCACGAGTTTTGAATTTCGAGTTAGTAGGTCTCTTTCGACCATATCTATCGAATTTGCCT ]
[+] EMBL CD074716 [ ACATGAAAATCGATATTATTTTTATTATAGTCAAAAAGAAATTATATTTGTAAAATTGTTGAAATGTTTTATGCTCGAACATCCTCACTTCTCTGTTTTCTGGTATCGTTAGAGCTAAGCTTAAATTCAAATTCCTTGTTCTTATCTGAATGTTTGTTTTCACTCCTTTTTACATTTAAAGCTGAAGAAGCTTGTTGTTCAGCTCCAACTTGGATATAAGCATGAGTACCATTCGCTTGATAAT CA CCAGTTCGTTT ATATTTACGTTC TTCAATTAAA CCACCTTGAATATCGAATTGATTATCAACAATTTTTTTAGAATATTTTTTCTCTTTT CCACGAGTTTTGAATTTCGAGTTAGTAGGTCTCTTTCGACCATATCTATCGAATTTGCCTTCAATTACATAATATGTAGATTCTGATGATACGATACCGTGTCTACCGAGTCCACG TGAACGGAATTTGCCTTTAGCTTTGAGATGTCCATATTTTTTGTGTTTATATTGAGATCTAGAATGACCACTCATTTTAGATGCCTCTAAACCATTTTGTCTAGATCCGCTTTGGTCAAAGTTTAACTCCTTACTTTTACTATTTTTTCTACTATTTGAGTTACTGAG TTTTGATCCAGCGTTGTGATTAGTTTCGGTC ]
[-] EMBL AI976107 [ CTGAAGAAGCTTGTTGTTCAGCTCCAACTTGGATATAAGCATGAGTACCATTCGCTTGATAAT CA CCAGTTCGTTT ATATTTACGTTC TTCAATTAAA CCGCCTTGAATATCGAATTGATTATCAACAATTTTTTTAGAATATTTTTTCTCTTTT CCACGAGTTTTGAATTTCGAGTTAGTAGGTCTCTTTCGACCATATCTATCGAATTTGCCTTCAATTACATAATATGTAGATTCTGATGATGCGATACCGTGTCTACCGAGTCCACGTTGAACGGAATTTGCCTTTAGCTTTGAGATGTCCATATTTTTTGTGTTTATATTGAGATCTAGAATGACCACTCATTTTAGATGCCTGTAACCCATTTTGTCTAGATCCGCTTTGGTCAAAGTTTAACTCCTTACTTTTACTATTTTTTCTACTATTTGAGTTACTGAG TTTTGATCCAGCGTTGTGATTAGTTTCGGTCTTCTGTTCAAAACCG AATTGCACTCCTACAACTGTTATTACAGATATCAGAAAAATTAGAATTATTAGTTTCATTTTAATATCC ]
[-] EMBL SM956 [ TGATGATCCA CCAGTTCGTTTAATATTNACGTTCNTCCAATTAAACCCACCTTGAATATCGAATTGATTATCCACCANTTTTTTAGAATATNTTTTCTCTTTTCCCNCGAGTTTTGAATTTCGAGTTAGTAGGTCTCTTTCGACCATATCTANCGAATTTGCCTTCAATTACATAATATGTAGATTCTGATGATACGATACCGTGTCTACCGAGTCCACG TGAACGGAATTTGCCTTTAGCTTTGAGATGTCCATATTTTTTGTGTTTATATTGAGATCTAGAATGACCACTCATTTTAGATGCCTCTAAACCATTTTGTCTAGATCCGCTTTGGTCCAAGTTTAACTCCTTACTTTTACTANTTTTTCNACTAATTGAGTTACTGAGTTTTTGATCCANCNTTGTGATTAGTTTCGTTCTTCTGTTCCAANCCGNATTTNCACTCCNACA ]
[-] EMBL CD083992 [ TTTTTTCTCTTTT CCACGAGTTTTGAATTTCGAGTTAGTAGGTCTCTTTCGACCATATCTATCGAATTTGCCTTCAATTACATAATATGTAGATTCTGATGATACGATACCGTGTCTACCGAGTCCACG TGAACGGAATTTGCCTTTAGCTTTGAGATGTCCATATTTTTTGTGTTTATATTGAGATCTAGAATGACCACTCATTTTAGATGCCTCTAAACCATTTTGTCTAGATCCGCTTTGGTCAAAGTTTAACTCCTTACTTTTACTATTTTTTCTACTATTTGAGTTACTGAG TTTTGATCCAGCGTTGTGATTAGTTTCGGTCTTCTGTTCAAAACCG AATTGCACTCCTACAACTGTTATTACAGATATCAGAAAAATTAGAATTATTAGTTTCATTTTAATATCCATATACAAATTCTCTTATAAGTAATAATTTACGCCTCGTGCCGATTCTGGCC]
consensusID : consensus_10964#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 767 fasta sequence
[AAAGGTTATTAACATGAAAATCGATATTACGTTTATTATAGTCTAATAGAAATTATATTCCTAAAATTCTTGAAATGGTTTATTTTTGCTGTCGCAAATCTAACCTTTTAATGGTTACGTTATTGTTAAGATTAAAATCAAATTGCTTGTTCTTTTGTGAATGTTTGCTTTCGCTATTATTTGCTCTTGTATTCAAAGAAGCATGATGTTCAGCTCCAACTTGGATATAAGCATGAGT-ACCATTCGCTTGATAATCACCAGTTCGTTTATATTTACGTT-CTTCAATTAAACCA-CCTTGAATATCGAATTGATTATCAACAA-TTTTTTTAGAATATTTTTTCTCTTTTCCACGAGTTTT-GAATTTCGAGTTAGTAGGTCTCTTTCGACCATATCTATCGAATTTGCCTTCAATTACATAATATGTAGATTCTGATGACACGATACCGTGTCTACCGAGTCCACGTGAACGGAA-TTTGCCTTTAGCTTTGAGATGTCCATATTTTCTGTGTCTATATCGAGATCTAG-AAAACCACTCATTTTAGATGCTTCCAAACCTCTCTGTCCAGAACTGCTTCCGCCAATTCCTAATTCCCAACTTCCTGGATTTG-TC-ATC-TC-GTTT-ATC-AATC-GGAT-CAACGTGGTTATTAGTATTGCTCCTCACTTTCAAAACTAAATCTCTGTGTTACAACTGTTGTTGAAGATATCAGAAAAATTAGATCAATAATTTAATTTCAATATCCACCTCGTGCCGATTCATGGCCTCGGGGCCA]
[+] EMBL SMAA8337 [AAAGGTTATTAACATGAAAATCGATATTACGTTTATTATAGTCTAATAGAAATTATATTCCTAAAATTCTTGAAATGGTTTATTTTTGCTGTCGCAAATCTAACCTTTTAATGGTTACGTTATTGTTAAGATTAAAATCAAATTGCTTGTTCTTTTGTGAATGTTTGCTTTCGCTATTATTTGCTCTTGTATTCAAAGAAGCATGATGTTCAGCTCCAACTTGGATATAAGCATGAGT ACCATTCGCTTGATAATCACCAGTTCGTTTATATTTACGTT CTTCAATTAAACCA CCTTGAATATCGAATTGATTATCAACAA TTTTTTTAGAATAATTTTTCCCCTTTCCAAGAGTTTTGGAATTTCG ]
[+] EMBL SMAA8287 [AAAGGTTATTAACATGAAAATCGATATTACGTTTATTATAGTCTAATAGAAATTATATTCCTAAAATTCTTGAAATGGTTTATTTTTGCTGTCGCAAATCTAACCTTTTAATGGTTACGTTATTGTTAAGATTAAAATCAAATTGCTTGTCCTTTTGTGAATGTTTGCTTTCGCAATTATTTGCTCTTGTATTCAAAGAAGCATGATG ]
[+] EMBL SMAA8286 [AAAGGTTATTAACATGAAAATCGATATTACGTTTATTATAGTCTAATAGAAATTATATTCCTAAAATTCTTGAAATGGTTTATTTTTGCTGTCGCAAATCTAACCTTTWAATGGTTACGTTATTGTTAAGATTAAAATCACATTGCTTGTTCTTTTGTGAATGTTTGCTTTCGCTAT ]
[+] EMBL SMAA85786 [ ATTAACATGAAAATCGATATTACGTTTATTATAGTCTAATAGAAATTATATTCCTAAAATTCTTGAAATGGTTTATTTTTGCTGTCGCAAATCTAACCTTTTAATGGTTACGTTATTGTTAAGATTAAAATCAAATTGCTTGTTCTTTTGTGAATGTTTGCTTTCGCTATTATTTGCTCTTGTATTCAAAGAAGCATGATGTTCAGCTCCAACTTGGATATAAGCATGAGT ACCATTCGCTTGATAATCACCAGTTCGTTTATATTTACGTT CTTCAATTAAACCA CCTTGAATATCGAATTGATTATCAACAA TTTTTTTAGAATATTTTTTCTCTTTTCCACGAGTTTT GAATTTCGAGTTAGTAGGTCTCTTTCGACCATATCTATCGAATTTGCCTTCAATTACATAATATGTAGATTCTGATGACACGATACCGTGTCTACCGAGTCCACGTGAACGGAATTTTGCCTTTAGCTTT ]
[+] EMBL SMAA85764 [ ATTAACATGACAATCGATATTACGTTTATTATAGTCTAATAGAAATTATATTCCTAAAATTCTTGAAATGGTTTATTTTTGCTGTCGCAAATCTAACCTTTTAATGGTTACGTTATTGTTAAGATTAAAATCAAATTGCTTGTTCTTTTGTGAATGTTTGCTTTCGCTATTATTTGCTCTTGTATTCAAAGAAGCATGATGTTCAGCT CAACTTGGATATAAGCATGAGT ACCATTCGCTTGATAATCACCAGTTCGTTTATATTTACGTT CTTCAATTAAACCA CCGTGAATATCGAATTGATTATCAACAA TTTTTTTAGAATATTTTTGCTCTTTTCCACGAGTTTT GAATTTCGAGTTAGTAGGACTCTTTCGACCATATCTATCGAATTTGCCTTCAATTACATAATATGTAGATTCTGATGACACGATACCGTGTCTACCGAGTCCACGTGAACGGAA TTTGCCTTTA ]
[+] EMBL SMAA85824 [ ATTAACATGAAAATCGATATTACGTTTATTATAGTCTAATAGAAATTATATTCCTAAAATTCTTGAAATGGTTTATTTTTGCTGTCGCAAATCTAACCTTTTAATGGTTACGTTATTGTTAAGATTAAAATCAAATTGCTTGTTCTTTTGTGAATGTTTGCTTTCGCTATTATTTGCTCTTGTATTCAAAGAAGCATGATGTTCAGCTCCAACTTGGATATAAGCATGAGT ACCATTCGCTTGATAATCACCAGTTCGTTTATATTTACGTT CTTCAATTAAACCA CCTTGAATATCGAATTGATTATCAACAA TTTTTTTAGAATATTTTTTCTCTTTTCCACGAGTTTT GA ]
[+] EMBL SMAA85825 [ ATTAACATGAAAATCGATATTACGTTTATTATAGTCTAATAGAAATTATATTCCTAAAATTCTTGAAATGGTTTATTTTTGCTGTCGCAAATCTAACCTTTTAATGGTTACGTTATTGTTAAGATTAAAATCAAATTGCTTGTTCTTTTGTGAATGTTTGCTTTCGCTATTATTTGCTCTTGTATTCAAAGAAGCATGATGTTCAGCTCCAACTTGGATATAAGCATGAGT ACCATTCGCTTGATAATCACCAGTTCGTTTATATTTACGTT CTTCAATTAAACCA CCTTGAATATCGAATTGATTATCAACAA TTTTTTTAGAATATTTTTTCTCTTTTCCACGAGTTTT GA ]
[+] EMBL SMAA85772 [ ATTAACATGAAAATCGATATTACGTTTATTATAGTCTAATAGAAATTATATTCCTAAAATTCTTGAAATGGTTTATTTTTGCTGTCGCAAATCTAACCTTTTAATGGTTACGTTATTGTTAAGATTAAAATCAAATTGCTTGTTCTTTTGTGAATGTTTGCTTTCGCTATTATTTGCTCTTGTATTCAAAGAAGCATGATGTTCAGCTCCAACTTGGATATAAGCATGAGT ACCATTCGCTTGATAATCACCAGTTCGTTTATATTTACGTT CTTCAATTAAACCA CCTTGAATATCGAATTGATTATCAACAATTTTTTTTAGAATATTT ]
[+] EMBL SMAA85754 [ ATTAACATGAAAATCGATATTACGTTTATTATAGTCTAATAGAAATTATATTCCTAAAATTCTTGAAATGGTTTATTTTTGCTGTCGCAAATCTAACCTNTTAATGGTTACGTTATTGTTAAGATTAAAATCAAATTGCTTGTTCTTTTGTGAATGTTTGCTTTCGCTATTATTTGCTCTTGTATTCAAAGAAGCATGATGTTCAGCTCCAACTTGGATATAAGCATGAGT ACCATTCGCTTGATAATCACCAGTTCGTTTATATTTACGTT CTTCAATTAAACCA CCTTGAATATCGATTGGATTA ]
[+] EMBL SMAA85753 [ ATTAACATGAAAATCGATATTACGTTTATTATAGTCTAATAGAAATTATATTCCTAAAATTCTTGAAATGGTTTATTTTTGCTGTCGCAAATCTAACCTTTTAATGGTTACGTTATTGTTAAGATTAAAATCAAATTGCTTGTTCTTTTGTGAATGTTTGCTTTCGCTATTATTTGCTCTTGTATTCAAAGAAGCATGATGTTCAGCTCCAACTTGGATATAAGCATGAGT ACCATTCGCTTGATAATCACCAGTTCGTTTATATTTACGTTCCTTCAATTAAACCATCCTTGAAata ]
[+] EMBL SMAA85747 [ ATTAACATGAAAATCGATATTACGTTTATTATAGTCTAATAGAAATTATATTCCTAAAATTCTTGAAATGGTTTATTTTTGCTGTCGCAAATCTAATGTTTTAATGGTTACGTTATTGTTAAGATTAAAATCAAATTGCTTGTTCTTTTGTGAATGTTTGCTTTCGCTATTATTTGCTCTTGTATTCAAAGAAGCATGATGTTCAGCTCCAACTTGGATATAAGCATGAGTAACCATTCG ]
[+] EMBL SMAA85804 [ ATTAACATGAAAATCGATATTACGTTTATTATAGTCTAATAGAAATTATATTCCTAAAATTCTTGAAATGGTTTATTTTTGCTGTCGCAAATCTAACCTTTTAATGGTTACGTTATTGTTAAGATTAAAATCAAATTGCTTGTTCTTTTGTGAATGTTTGCTTTCGCTATTATTTGCTCTTGTATTCAAAGAAGCA ]
[+] EMBL SMAA85809 [ ATTAACATGAAAATCGATATTACGTTTATTATAGTCTAATAGAAATTATATTCCTAAAATTCTTGAAATGGTTTATTTTTGCTGTCGCAAATCTAACCTTTTAATGGTTACGTTATTGTTAAGATTAAAATCAAATTGCTTGTTCTTTTGTGAATGTTTGCTTTCGCTATTATTTGCTCTTGTATTCAAAGAAG ]
[+] EMBL SMAA85768 [ ATTAACATGAAAATCGATATTACGTTTATTATAGTCTAATAGAAATTATATTCCTAAAATTCTTGAAATGGTTTATTTTTGCTGTCGCAAATCTAACCTTTTAATGGTTACGTTATTGTTAAGATTAAAATCAAATTGCTTGTTCTTTTGTGAATGTTTGCTTTCGCTATTATTTGCTCTTGTATTCAAAGAAGCATGATGTTCAGCTCCAACTTGGATATAAGCATGAGT ACCATTCGCTTGATAATCACCAGTTCGTTTATATTTACGTT CTTCAATTAAACCA CCTTGAATATCGAATTGATTATCAACAA TTTTTTTAGAATATTTTTTCTCTTTTCCACGAGTTTT GAATTTCGAGTTAGTAGGTCTCTTTCGACCATATCTATCGAATTTGCCTTCAATTACATAATATGTAGATTCTGATGACACGATACCGTGTCTACCGAGTCCACGTGAACGGAA TTTGCCTTTAGCTTTGAGATGTCCATATTTTCTGTGTCTATATCGAGATCTAG AAAACCACTCATTTTAGATGCTTCCAAACCTCTCTGTCCAGAACTGCTTCCGCCAATTCCTAATTCCCAACTTCCTGGATTTG TC ATC TC GTTT ATC AATC GGAT CAACGTG ]
[-] EMBL CD083661 [ GTT CTTCAATTAAACCA CCTTGAATATCGAATTGATTATCAACAA TTTTTTTAGAATATTTTTTCTCTTTTCCACGAGTTTT GAATTTCGAGTTAGTAGGTCTCTTTCGACCATATCTATCGAATTGGCCTTCAATTACATAATATGTAGATTCTGATGACACGATACCGTGTCTACCGAGTCCACGTGAACGGAA TTTGCCTTTAGCTTTGAGATGTCCATATTTTCTGTGTCTATATCGAGATCTAGAAAAACCACTCATTTTAGATGCTTCCAAACCTCTCTGTCCAGAACTGCTTCCGCCAATTCCTAATTCCCTACTTCTAGTATTTGTTCTATCTTCTGTTTGATCAAATCGGGATCCAACGTTGTTATTAGTATTGCTCCTCACTTTCAAAACTAAATCTCTGTGTTACAACTGTTGTTGAAGATATCAGAAAAATTAGATCAATAATTTAATTTCAATATCCACCTCGTGCCGATTCATGGCCTCGGGGCCA]
consensusID : consensus_10964#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 546 fasta sequence
[TCGATATATTTNTATATAGTCAAAAAGAAACATCCTCACTTCTCTGTTTTCTGGTATCGTTAGAGCTAAGCTTAAATTCAAATTCCTTGTTCTTATCTGAATGTTTGTTTTCACTCCTTTTTACATTTAAAGCTGAAGAAGCTTGTTGTTCAGCTCCAACTTGGATATAAGCATGAGTACCATTCGCTTGATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTAAACCACCTTGAATATCGAATTGATTATCAACAATTTTTTTAGAATATTTTTTCTCTTTTCCACGAGTTTTGAATTTCGAGTTAGTAGGTCTCTTTCGACCATATCTATCGAATTTGCCTTCAATTACATAATATGTAGATNNNNNNNNTACGATACCGTGTCTACCGAGTCCACGTGAACGGAATTTGCCTTTAGCTTTGAGATGTCCATATTTTTTGTGTTTATATTGAGATCTAGAATGACCACTCATTTTAGATGCCTCTAAACCATTTTGTCTAGATCCGCTTTGGTCAAAGTTTAACTTNNNNNNNNNNNNN]
[-] EMBL CD080882 [TCGATATATTTNTATATAGTCAAAAAGAAACATCCTCACTTCTCTGTTTTCTGGTATCGTTAGAGCTAAGCTTAAATTCAAATTCCTTGTTCTTATCTGAATGTTTGTTTTCACTCCTTTTTACATTTAAAGCTGAAGAAGCTTGTTGTTCAGCTCCAACTTGGATATAAGCATGAGTACCATTCGCTTGATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTAAACCACCTTGAATATCGAATTGATTATCAACAATTTTTTTAGAATATTTTTTCTCTTTTCCACGAGTTTTGAATTTCGAGTTAGTAGGTCTCTTTCGACCATATCTATCGAATTTGCCTTCAATTACATAATATGTAGATNNNNNNNNTACGATACCGTGTCTACCGAGTCCACGTGAACGGAATTTGCCTTTAGCTTTGAGATGTCCATATTTTTTGTGTTTATATTGAGATCTAGAATGACCACTCATTTTAGATGCCTCTAAACCATTTTGTCTAGATCCGCTTTGGTCAAAGTTTAACTTNNNNNNNNNNNNN]
[+] EMBL CD072670 [ GAACGGAATTTGCCTTTAGCTTTGAGATGTCCATATTTTTTGTGTTTATATTGAGATCTAGAATGACCACTCATTTTAGATGCCTCTAAACCATTT ]
consensusID : consensus_10964#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 187 fasta sequence
[TGGATATTGAAATTAAATTATTGATTCTAATTTTCCTGATATCCTCCAACACAGTTGTAACACAGAGATTTAGTTTTGAAAGTGAGGAGCAACTAATAACAACGTTGGATCCCGATTTGATCAAACAGAAGATAGACAAATACAAGAAGTAGGGAATTAGGAATTGGCGGAAGCAGTTCTGGACAGA]
[+] EMBL AA958295 [TGGATATTGAAATTAAATTATTGATTCTAATTTTCCTGATATCCTCCAACACAGTTGTAACACAGAGATTTAGTTTTGAAAGTGAGGAGCAACTAATAACAACGTTGGATCCCGATTTGATCAAACAGAAGATAGACAAATACAAGAAGTAGGGAATTAGGAATTGGCGGAAGCAGTTCTGGACAGA]
consensusID : consensus_10964#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 168 fasta sequence
[CGGCTTATATAAGAGCTAGATACCTTGCGCTTATAATCACCAGTTGCTTTATATTTAGCTTCTTCAATTAAACCACCTTGAATATCGAATTGATTATCAACAATTTTTTTAGAATATTTTTTCTCTTTTCCACGAGTTTTGAATTTCGAGTTAGTAGGTCTCTTTCGA]
[-] EMBL AA804147 [CGGCTTATATAAGAGCTAGATACCTTGCGCTTATAATCACCAGTTGCTTTATATTTAGCTTCTTCAATTAAACCACCTTGAATATCGAATTGATTATCAACAATTTTTTTAGAATATTTTTTCTCTTTTCCACGAGTTTTGAATTTCGAGTTAGTAGGTCTCTTTCGA]
consensusID : consensus_10964#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 141 fasta sequence
[ATCGAATTTGCCTTCAANTACATAATANGTAGATTCTGATGATAGGATACCGTGTCAACCGAGTCCACGTGAACGGAATTTGCCTTTAGCTTTGAGATGTCCANATTTNTGGGGTNTATATTGAGATTTAGGANGACCACT]
[-] EMBL AI111033 [ATCGAATTTGCCTTCAANTACATAATANGTAGATTCTGATGATAGGATACCGTGTCAACCGAGTCCACGTGAACGGAATTTGCCTTTAGCTTTGAGATGTCCANATTTNTGGGGTNTATATTGAGATTTAGGANGACCACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10964#1 ------------------------------------------------------------
consensus_10964#4 ------------------------------------------------------------
consensus_10964#0 CAATTCATTACTTTATTTTTAGTTTGATTTGTCTCAGTCATGAGAGACTACTAGGAATTA 60
consensus_10964#5 ------------------------------------------------------------
consensus_10964#2 ------------------------------------------------------------
consensus_10964#3 ------------------------------------------------------------
consensus_10964#1 ------------------------------------------------------------
consensus_10964#4 ------------------------------------------------------------
consensus_10964#0 ATCATATCGTTCATTGAAAAGATCTATGTATTGTTTGCGATGTATAAATAGTAGATCTTA 120
consensus_10964#5 ------------------------------------------------------------
consensus_10964#2 ------------------------------------------------------------
consensus_10964#3 ------------------------------------------------------------
consensus_10964#1 ------------------------------------------AAAGGTTATTAACATGAA 18
consensus_10964#4 ------------------------------------------------------------
consensus_10964#0 TTATTTATCAATAATGTGTGAAGATCAAAATGAATCAATAAATTATAATTTTAACATGAA 180
consensus_10964#5 ------------------------------------------------------------
consensus_10964#2 ------------------------------------------------------------
consensus_10964#3 ------------------------------------------------------------
consensus_10964#1 AATCGATATTACGTTTATTATAGTCTAATAGAAATTATATTCCTAAAATTCTTGAAATGG 78
consensus_10964#4 ------------------------------------------------------------
consensus_10964#0 AATCGATATTATTTTTATTATAGTCAAAAAGAAATTATATTTGTAAAATTGTTGAAATGT 240
consensus_10964#5 ------------------------------------------------------------
consensus_10964#2 ------------------------------------------TCGATATATTTNTATATA 18
consensus_10964#3 ------------------------------------------------------------
consensus_10964#1 TTTATTTTTGCTGTCGCAAATCTAACCTTTTAATGGTTACGTTATTGTTAAGATTAAAAT 138
consensus_10964#4 ------------------------------------------------------------
consensus_10964#0 TTTATGCTCGAACATCCTCACTTCTCTGTTTTCTGGTATCGTTAGAGCTAAGCTTAAATT 300
consensus_10964#5 ------------------------------------------------------------
consensus_10964#2 GTCAAAAAGAAACATCCTCACTTCTCTGTTTTCTGGTATCGTTAGAGCTAAGCTTAAATT 78
consensus_10964#3 ------------------------------------------------------------
consensus_10964#1 CAAATTGCTTGTTCTTTTGTGAATGTTTGCTTTCGCTATTATTTGCTCTTGTATTCAAAG 198
consensus_10964#4 ------------------------------------------------------------
consensus_10964#0 CAAATTCCTTGTTCTTATCTGAATGTTTGTTTTCACTCCTTTTTACATTTAAAGCTGAAG 360
consensus_10964#5 ------------------------------------------------------------
consensus_10964#2 CAAATTCCTTGTTCTTATCTGAATGTTTGTTTTCACTCCTTTTTACATTTAAAGCTGAAG 138
consensus_10964#3 ------------------------------------------------------------
consensus_10964#1 AAGCATGATGTTCAGCTCCAACTTGGATATAAGCATGAGTACCATTCGCTTGATAATCAC 258
consensus_10964#4 ------------------CGGCTTATATAAGAGC-TAGATACCTTGCGCTT-ATAATCAC 40
consensus_10964#0 AAGCTTGTTGTTCAGCTCCAACTTGGATATAAGCATGAGTACCATTCGCTTGATAATCAC 420
consensus_10964#5 ------------------------------------------------------------
consensus_10964#2 AAGCTTGTTGTTCAGCTCCAACTTGGATATAAGCATGAGTACCATTCGCTTGATAANNNN 198
consensus_10964#3 ------------------------------------------------------------
consensus_10964#1 CAGTTCGTTTATATTTACGTTCTTCAA-TTAAACCACCTTGAATATCGAATTGATTATCA 317
consensus_10964#4 CAGTTGCTTTATATTTAGCTTCTTCAA-TTAAACCACCTTGAATATCGAATTGATTATCA 99
consensus_10964#0 CAGTTCGTTTATATTTACGTTCTTCAA-TTAAACCACCTTGAATATCGAATTGATTATCA 479
consensus_10964#5 ------------------------------------------------------------
consensus_10964#2 NNNNNNNNNNNNNNNNNNNNNNNNNNAATTAAACCACCTTGAATATCGAATTGATTATCA 258
consensus_10964#3 --------------------------------TGGATATTGAA-ATTAAATTATTGATTC 27
consensus_10964#1 ACAATTTTTTTAGAATATTTTTTCTCTTTTC---CACGAGTTTTGAATTTCGAGTTAGTA 374
consensus_10964#4 ACAATTTTTTTAGAATATTTTTTCTCTTTTC---CACGAGTTTTGAATTTCGAGTTAGTA 156
consensus_10964#0 ACAATTTTTTTAGAATATTTTTTCTCTTTTC---CACGAGTTTTGAATTTCGAGTTAGTA 536
consensus_10964#5 ------------------------------------------------------------
consensus_10964#2 ACAATTTTTTTAGAATATTTTTTCTCTTTTC---CACGAGTTTTGAATTTCGAGTTAGTA 315
consensus_10964#3 -TAATTTTCCTGATATCCTCCAACACAGTTGTAACACAGAGATTTAGTTTTGAA--AGTG 84
consensus_10964#1 GGTCTCTTTCGACCATATCTATCGAATTTGCCTTCAATTACATAATATGTAGATTCTGAT 434
consensus_10964#4 GGTCTCTTTCGA------------------------------------------------ 168
consensus_10964#0 GGTCTCTTTCGACCATATCTATCGAATTTGCCTTCAATTACATAATATGTAGATTCTGAT 596
consensus_10964#5 --------------------ATCGAATTTGCCTTCAANTACATAATANGTAGATTCTGAT 40
consensus_10964#2 GGTCTCTTTCGACCATATCTATCGAATTTGCCTTCAATTACATAATATGTAGATNNNNNN 375
consensus_10964#3 AGGAGCAACTAATAACAAC-GTTGGATCCCGATTTGATCAAACAGAAGATAGA---CAAA 140
consensus_10964#1 GACACGATACCGTGTCTACCGAGTCCACGTGAACGGAATTTGCCTTTAGCTTTGAGATGT 494
consensus_10964#4 ------------------------------------------------------------
consensus_10964#0 GATACGATACCGTGTCTACCGAGTCCACGTGAACGGAATTTGCCTTTAGCTTTGAGATGT 656
consensus_10964#5 GATAGGATACCGTGTCAACCGAGTCCACGTGAACGGAATTTGCCTTTAGCTTTGAGATGT 100
consensus_10964#2 NNTACGATACCGTGTCTACCGAGTCCACGTGAACGGAATTTGCCTTTAGCTTTGAGATGT 435
consensus_10964#3 TACAAGAAGTAGGGAATTAGGAATTGGCGGAAGCAGTTCTGGACAGA------------- 187
consensus_10964#1 CCATATTTTCTGTGTCTATATCGAGATCTAGAA-AACCACTCATTTTAGATGCTTCCAAA 553
consensus_10964#4 ------------------------------------------------------------
consensus_10964#0 CCATATTTTTTGTGTTTATATTGAGATCTAGAATGACCACTCATTTTAGATGCCTCTAAA 716
consensus_10964#5 CCANATTTNTGGGGTNTATATTGAGATTTAGGANGACCACT------------------- 141
consensus_10964#2 CCATATTTTTTGTGTTTATATTGAGATCTAGAATGACCACTCATTTTAGATGCCTCTAAA 495
consensus_10964#3 ------------------------------------------------------------
consensus_10964#1 CCTCTCTGTCCAGAACTGCTTCCGCCAATTCCTAATTCCCAACTTCCTGGATTTGTCATC 613
consensus_10964#4 ------------------------------------------------------------
consensus_10964#0 CCATTTTGTCTAGATCCGCTTTGGTCAAAGTTTAACTCCTTACTTTTACTATTTTTTCTA 776
consensus_10964#5 ------------------------------------------------------------
consensus_10964#2 CCATTTTGTCTAGATCCGCTTTGGTCAAAGTTTAACTTNNNNNNNNNNNNN--------- 546
consensus_10964#3 ------------------------------------------------------------
consensus_10964#1 TCGTTTATCAATCGGATCAACGTGGTTATTAGTATTGCTCCTCACTTTCAAAACTAAATC 673
consensus_10964#4 ------------------------------------------------------------
consensus_10964#0 CTATTTGAGTTACTGAGTTTTGATCCAGCGTTGTGATTAGTTTCGGTCTTCTGTTCAAAA 836
consensus_10964#5 ------------------------------------------------------------
consensus_10964#2 ------------------------------------------------------------
consensus_10964#3 ------------------------------------------------------------
consensus_10964#1 TCTGTGTTACAACTGTTGTTGAAGATATCAGAAAAATTAGATCAATAATTTAATTTCAAT 733
consensus_10964#4 ------------------------------------------------------------
consensus_10964#0 CCGAATTGCACTCCTACAACTGTTATTACAGATATCAGAAAAATTAGAATTATTAGTTTC 896
consensus_10964#5 ------------------------------------------------------------
consensus_10964#2 ------------------------------------------------------------
consensus_10964#3 ------------------------------------------------------------
consensus_10964#1 ATCCACCTCGTGCCGATTCATGGCCTCGGGGCCA-------------------------- 767
consensus_10964#4 ------------------------------------------------------------
consensus_10964#0 ATTTTAATATCCATATACAAATTCTCTTATAAGTAATAATTTACGCCTCGTGCCGATTCT 956
consensus_10964#5 ------------------------------------------------------------
consensus_10964#2 ------------------------------------------------------------
consensus_10964#3 ------------------------------------------------------------
consensus_10964#1 ----
consensus_10964#4 ----
consensus_10964#0 GGCC 960
consensus_10964#5 ----
consensus_10964#2 ----
consensus_10964#3 ----
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||