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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10971#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 784 fasta sequence
[AAACCGATCTAGT-TTATTTAAGTGAAATTATTAAATCACATAAAAAAATTGACAGCGTTGCGGCGCAAATTCACTTCAATCGGGTGGGCC-TCAAAGTAGTCGTTGTCAATCCAATAATACTCGTTC-TCAGTTTGGCCAGGAAACAAACGCAACTTATCACACAATATTACTTGACTACCAGATTTAAATGAATACGGTTGAGAAAGGAGCCATGAACGAAACTGTTGTATATATGGTCCCAATAGCTGGTGGAATGACGCAAAATATCCAAACGAATGTGATCTCCTTCTTTAAAAAGTCAGCAAGTACTTCTTGAACTATGTATGACTCCTTCTCATGTTTTCCACCAGGAGATTCAGAATCACTATCAGCCCAGTCGTACTCGTAAATGTCCTCCAAGTTAACATTATCAGTAAGTCCTGAGATGGAAGTAGAACGAGACATATCTGACTTCATTTTACTCTCACGTCTTGAAGGAGTCGCGGAGAGAGAATTACTGGACTGATTCGTCCGAGTCTTCTGTGTATCTGAGTC-GCCATCATCATTCTTTAGGGGTGTACCAGGCAAAGTATCCACACTCATGTCCAGATCAAACATTACGGTCTCATCGTCAATCTGATCTTTAAATGGAGCGTGATTATTTTCTGTACAAATTGGAAATGTCATTGATTTTGCTTGTTGAAAAAGAGGCCAAATTTCAATTACGATTCATCTAAAAATTAAACCTCGCTCGATTGGTACAACTACCCGGAACACTTTAATTTAACAAATCCCTCGTGCCGAA]
[+] EMBL CD074574 [AAACCGATCTAGT TTATTTAAGTGAAATTATTAAATCACATAAAAAAATTGACAGCGTTGCGGCGCAAATTCACTTCAATCGGGTGGGCC TCAAAGTAGTCGTTGTCAATCCAATAATACTCGTTC TCAGTTTGGCCAGGAAACAAACGCAACTTATCACACAATATTACTTGACTACCAGATTTAAATGAATACGGTTGAGAAAGGAGCCATGAACGAAACTGTTGTATATATGGTCCCAATAGCTGGTGGAATGACGCAAAATATCCAAACGAATGTGATCT CTTCTTTAAAAAGTCAGCAAGTACTTCTTGAACTATGTATGACTCCTTCTCATGTTTTCCACCAGGAGATTCAGAATCACTATCAGCCCAGTCGTACTCGTAAATGTCCTCCAAGTTAACATTATCAGTAAGTCCTGAGATGGAAGTAGAACGAGACATATCTGACTTCATTTTACTCTCACGTCTTGAAGGAGTCGCGGAGAGAGAATTACTGGACTGATTCGTCCGAGTCTTCTGTGTATCTGAGTC GCCATCATCATTCTTTAGGGGTGTACCAGGCAAAGTATCCACACTCATGTCCAGATCAAACATTACGGTCTCATCGTCAATCTGATCTTTAAATGGAGCGTGATTATTTTCTGTACAAA ]
[-] EMBL CD080656 [ AACCGATCTAGTNTTATTTAAGTGAAATTATTAAATTACATAAAAAAATTGACAGCGTTGCGGCGCAAATTCACTTCAATCGGGTGGGCC TCAAAGTAGTCGTTGTCAATCCAATAATACTCGTTC TCAGTTTGGCCAGGAAACAAACGCAACTTATCACACAATATTACTTGACTACCAGATTTAAATGAATACGGTTGAGAAAGGAGCCATGAACGAAACTGTTGTATATATGGTCCCAATAGCTGGTGGAATGACGCAAAATATCCAAACGAATGTGATCT CTTCTTTAAAAAGTCAGCAAGTACTTCTTGAACTATGTATGACTCCTTCTCATGTTTTCCACCAGGAGATTCAGAATCACTATCAGCCCAGTCGTACTCGTAAATGTCCTCCAAGTTAACATTATCAGTAAGTCCTGAGATGGAAGTAGAACGAGACATATCTGACTTCATTTTACTCTCACGTCTTGAAGGAGTCGCGGAGAGAGAATTACTGGACTGATTCGTCCGAGTCTTCTGTGTATCTGAGTC GCCATCATCATTCTTTAGGGGTGTACCAGGCAAAGTATCCACACTCATGTCCAGATCAAACATTACGGTCTCATCGTCAATCTGATCTTTAAATGGAGCGTGATTATTTTCTGTACAAAT ]
[-] EMBL AW146506 [ cCCGAT TGAT TTTTTTAGGTGAAATTTTTAATTC CTTAAAAAAATTGACAGCGTTGCGGCGCAAATTCACTTCAATCGGGTGGGCCTTCAAAGTAGTCG TGTCAATCCAATAATACTCGTTCTTCAGTTTGGCCAGGAAACAAACGCAACTTATCACACAATATTACTTGACTACCAGATTTAAATGAATACGGTTGAGAAAGGAGCCATGAACGAAACTGTTGTATATATGGTCCCAATAGCTGGTGGAATG ]
[+] EMBL BG932224 [ GCGGCGCACATTCACTTCAATCGGGTGGGCC TCAAAGTAGTCGTTGTCAATCCAATAATACTCGTTC TCAGTTTGGCCAGGAAACAAACGCAACTTATCACACAATATTACTTGACTACCAGATTTAAATGAATACGGTTGAGAAAGGAGCCATGAACGAAACTGTTGTATATATGGTCCCAATAGCTGGTGGAATGACG ]
[-] EMBL CD124114 [ TTCAATCGGGTGGGCC TCAAAGTAGTCGTTGTCAATCCAATAATACTCGTTC TCAGTTTGGCCAGGAAACAAACGCAACTTATCACACAATATTACTTGACTACCAGATTTAAATGAATACGGTTGAGAAAGGAGCCATGAACGAAACTGTTGTATATATGGTCCCAATAGCTGGTGGAATGACGCAAAATATCCAAACGAATGTGATCTCCTTCTTTAAAATGTCAGCAAGTACTTCTTGAACTATGTATGACTCCTTCTCATGTTTTCCACCAGGAGATTCAGAATCACTATCAGCCCAGTCGTACTCGTAAATGTCCTCCAAGTTAACATTATCAGTAAGTCCTGAGATGGAAGTAGAACGAGACATATCTGACTTCATTTTACTCTCACGTCTTGAAGGAGTCGCGGAGAGAGAATTACTGGACTGATTCGTCCGAGTCTTCTGTGTATCTGAGTC GCCATCATCATTCTTTAGGGGTGTACCAGGCAAAGTATCCACACTCATGTCCAGATCA ]
[-] EMBL CD124165 [ TTCAATCGGGTGGGCC TCAAAGTAGTCGTTGTCAATCCAATAATACTCGTTC TCAGTTTGGCCAGGAAACAAACGCAACTTATCACACAATATTACTTGACTACCAGATTTAAATGAATACGGTTGAGAAAGGAGCCATGAACGAAACTGTTGTATATATGGTCCCAATAGCTGGTGGAATGACGCAAAATATCCAAACGAATGTGATCTCCTTCTTTAAAAAGTCAGCAAGTACTTCTTGAACTATGTATGACTCCTTCTCATGTTTTCCACCAGGAGATTCAGAATCACTATCAGCCCAGTCGTACTCGTAAATGTCCTCCAAGTTAACATTATCAGTAAGTCCTGAGATGGAAGTAGAACGAGACATATCTGACTTCATTTTACTCTCACGTCTTGAAGGAGTCGCGGAGAGAGAATTACTGGACTGATTCGTCCGAGTCTTCTGTGTATCTGAGTC GCCATCATCATTCTTTAGGGGTGTACCAGGCAAAGTATCCACACTCATGTCCAGATCA ]
[-] EMBL CD124101 [ TTCAATCGGGTGGGCC TCAAAGTAGTCGTTGTCAATCCAATAATACTCGTTC TCAGTTTGGTCAGGAAACAAACGCAACTTATCACACAATATTACTTGACTACCAGATTTAAATGAATACGGTTGAGAAAGGAGCCATGAGCGAAACTGTTGTATATATGGTCCCAATAGCTGGTGGAATGACGCAAAATATCCAAACGAATGTGATCTCCTTCTTTAAAAAGTCAGCAAGTACTTCTTGAACTATGTATGACTCCTTCTCATGTTTTCCATCAGCAGATTCAGAATCACTATCAGCCCAGCCGTACTTGTAAATGTCCTCCAAGTTAACATTATCAGTAAGTCATGAGATGGAAGTAGACCGAGACATATCTGCCTTCATTTTACTCTCTCGTCTTGAAGGAGTTGCGGAGAGAGAATTACTGGTATGATTCGTCCGAGTTTTCTGTGTATCTGAGTCAGCCATCATCATTCTTTAGGGGTGTACCAGGCAAAGTATCCACAATCATGTACAGATCA ]
[-] EMBL CD065159 [ CGTTC TCAGTTTGGCCAGGAAACAAACGCAACTTATCACACAATATTACTTGACTACCAGATTTAAATGAATACGGTTGAGAAAGGAGCCATGAACGAAACTGTTGTATATATGGTCCCAATAGCTGGTGGAATGACGCAAAATATCCAAACGAATGTGATCTCCTTCTTTAAAAAGTCAGCAAGTACTTCTTGAACTATGTATGACTCCTTCTCATGTTTTCCACCAGGAGATTCAGAATCACTATCAGCCCAGTCGTACTCGTAAATGTCCTCCAAGTTAACATTATCAGTTAGTCCTGAGATGGAAGTAGAACGAGACATATCTGACTTCATTTTACTCTCACGTCTTGAAGGAGTCGCGGAGAGAGAATTACTGGACTGATTCGTCCGAGTCTTCTGTGTATCTGAGTC GCCATCATCATTCTTTAGGGGTGTACCAGGCAAAGTATCCACACTCATGTCCAGATCAAACATTACGGTCTCATCGTCAATCTGATCTTTAAATGGAGCGTGATTATTTTCTGTACAAATTGGAAATGTCATTGATTTTGCTTGTTGAAAAAGAGGCCAAATTTCAATTACGATTCATCTAAAAATTAA ]
[+] EMBL CD122513 [ GAAACAAACGCAACTTATCACACAATATTACTTGACTACCAGATTTAAATGAATACGGTTGAGAAAGGAGCCATGAACGAAACTGTTGTATATATGGTCCCAATAGCTGGTGGAATGACGCAAAATATCCAAACGAATGTGATCTCCTTCTTTAAAAAGTCAGCAAGTACTTCTTGAACTATGTATGACTCCTTCTCATGTTTTCCACCAGGAGATTCAGAATCACTATCAGCCCAGTCGTACTCGTAAATGTCCTCCAAGTTAACATTATCAGTAAGTCCTGAGATGGAAGTAGAACGAGACATATCTGACTTCATTTTACTCTCACGTCTTGAAGGAGTCGCGGAGAGAGAATTACTGGACTGATTCGTCCGAGTCTTCTGTGTATCTGAGTC GCCATCATCATTCTTTAGGGGTGTACCAGGCAAAGTATCCACACTCATGTCCAGATCAAACATTACGGTCTCATCGTCAATCTGATCTTTAAATGGAGCGTGATTATTTTCTGTACAAATTGGAAATGTCATTGATTTTGCTTGTTGAAAAAGAGGCCAAATTTCAATTACGATTCATCTAAAAATTAAACCTCGCTCGATTGGTACAACTACCCG ]
[+] EMBL CD189694 [ CAACTTATCACACAATATTACTTGACTACCAGATTTAAATGAATACGGTTGAGAAAGGAGCCATGAACGAAACTGTTGTATATATGGTCCCAATAGCTGGTGGAATGACGCAAAATATCCAAACGAATGTGATCTCCTTCTTTAAAAAGTCAGCAAGTACTTCTTGAACTATGTATGACTCCTTCTCATGTTTTCCACCAGGAGATTCAGAATCACTATCAGCCCAGTCGTACTCGTAAATGTCCTCCAAGTTAACATTATCAGTAAGTCCTGAGATGGAAGTAGAACGAGACATATCTGACTTCATTTTACTCTCACGTCTTGAAGGAGTCGCGGAGAGAGAATTACTGGACTGATTCGTCCGAGTCTTCTGTGTATCTGAGTC GCCATCATCATTCTT ]
[-] EMBL CD133045 [ AACTTATCACACAATATTACTTGACTACCAGATTTAAATGAATACGGTTGAGAAAGGAGCCATGAACGAAACTGTTGTATATATGGTCCCAATAGCTGGTGGAATGACGCAAAATATCCAAACGAATGTGATCTCCTTCTTTAAAAAGTCAGCAAGTACTTCTTGAACTATGTATGACTCCTTCTCATGTTTTCCACCAGGAGATTCAGAATCACTATCAGCCCAGTCGTACTCGTAAATGTCCTCCAAGTTAACATTATCAGTAAGTCCTGAGATGGAAGTAGAACGAGACATATCTGACTTCATTTTACTCTCACGTCTTGAAGGAGTCGCGGAGAGAGAATTACTGGACTGATTCGTCCGAGTCTTCTGTGTATCTGAGTC GCCATCATCATTCTTT ]
[-] EMBL CD153002 [ CCCAATAGCTGGTGGAATGACGCAAAATATCCAAACGAATGTGATCTCCTTCTTTAAAAAGTCAGCAAGTACTTCTTGAACTATGTATGACTCCTTCTCATGTTTTCCACCAGGAGATTCAGAATCACTATCAGCCCAGTCGTACTCGTAAATGTCCTCCAAGTTAACATTATCAGTAAGTCCTGAGATGGAAGTAGAACGAGACATCTCTGACTTCATTTTACTCTCACGTCTTGAAGGAGTCGCGGAGAGAGAATTACTGGACTGATTCGTCCGAGTCTTCTGTGTATCTGAGTC GCCATCATCATTCTTTAGGGGTGTACCAGGCAAAGTATCCACACTCATGTCCAGATCAAACATTACGGTCTCATCGTCAATCTGATCTTTAAATGGAGCGTGATTACTTTCTGTGCAAATTGGAAATGTCATTGATTTTGCTTGTTGAAAAAGAGGCCAAATTTCAATTACGATTCATCTAAAAATTAAACCTCGCTCGATTGGTACAACTACCCGGAACACTTTAATTT ]
[-] EMBL CD153449 [ cnCAATAGCTGGTGGAATGACGCAAAATATCCAAACGAATGTGATCTCCTTCTTTAAAAAGTCAGCAAGTACTTCTTGAACTATGTATGACTCCTTCTCATGTTTTCCACCAGGAGATTCAGAATCACTATCAGCCCAGTCGTACTCGTAAATGTCCTCCAAGTTAACATTATCAGTAAGTCCTGAGATGGAAGTAGAACGAGACATATCTGACTTCATTTTACTCTCACGTCTTGAAGGAGTCGCGGAGAGAGAATTACTGGACTGATTCGTCCGAGTCTTCTGTGTATCTGAGTC GCCATCATCATTCTTTAGGGGTGTACCAGGCAAAGTATCCACACTCATGTCCAGATCAAACATTACGGTCTCATCGTCAATCTGATCTTTAAATGGAGCGTGATTATTTTCTGTACAAATTGGAAATGTCATTGATTTTGCTTGTTGAAAAAGAGGCCAAATTTCAATTACGATTCATCTAAAAATTAAACCTCGCTCGATTGGTACAACTACCCGGAACACTTTAATTT ]
[+] EMBL CD158292 [ ATGACGCAAAATATCCAAACGAATGTGATCTCCTTCTTTAAAAAGTCAGCAAGTACTTCTTGAACTATGTATGACTCCTTCTCATGTTTTCCACCAGGAGATTCAGAATCACTATCAGCCCAGTCGTACTCGTAAATGTCCTCCAAGTTAACATTATCAGTAAGTCCTGAGATGGAAGTAGAACGAGACATATCTGACTTCA TTTACTCTCACGTCTTGAAGGAGTCGCGGAGAGAGAATTACTGGACTGATTCGTCCGAGTCTTCTGTGTATCTGAGTC GCCATCATCATTCTTTAGGGGTGTACCAGGCAAAGTATCCACACTCATGTCCAGATCAAACATTACGGTCTCATCGTCAATCTGATCTTTAna ]
[-] EMBL CD083739 [ AGATTCAGAATCACTATCAGCCCAGTCGTACTCGTAAATGTCCTCCAAGTTAACATTATCAGTAAGTCCTGAGATGGAAGTAGAACGAGACATATCTGACTTCATTTTACTCTCACGTCTTGAAGGAGTCGCGGAGAGAGAATTACTGGACTGATTCGTCCGAGTCTTCTGTGTATCTGAGTC GCCATCATCATTCTTTAGGGGTGTACCAGGCAAAGTATCCACACTCATGTCCAGATCAAACATTACGGTCTCATCGTCAATCTGATCTTTAAATGGAGCGTGATTATTTTCTGTACAAATTGGAAATGTCATTGATTTTGCTTGTTGAAAAAGAGGCCAAATTTCAATTACGATTCATCTAAAAATTAAACCTCGCTCGATTGGTACAACTACCCGGAACACTTTCATGCAACAAATCCCTCGTGCCGAA]
[-] EMBL CD122449 [ GAGACAGATCTGACTTCATTTTACTCTCACGTCTTGAAGGAGTCGCGGAGAGAGAATTACTGGACTGATTCGTCCGCTTCTTCTGTGTATCTGAGTC GCCATCATCATTCTTTAGGGGTGTACCAGGCAAAGTATCCACACTCATGTCCAGATCAAACATTACGGTCTCATCGTCAATCTGATCTTTAAATGGAGCGTGATTATTTTCTGTACAAATTGGAAATGTCATTGATTTTGCTTTTTGAAAAAGAGGCCAAATTTCAATTACGATTCATCTAAAAATTAAACCTCGCTCGATTGGTACAACTACCCGGAACACTTTAATTT ]
[-] EMBL CD194417 [ GAGTCGCGGAGAGAGAACTACTGGACTGATTCGTCCGAGTAGTCTGTGTATCTGAGTC GCCATCATCATTCTTTAGGGGTGTACCAGGCAAAGTATCCACACTCATGTCCAGATCAAACATTc ]
[+] EMBL CD090258 [ TAGGGGTGTACCAGGCAAAGTATCCACACTCATGTCCAGATCAAACATTACGGTCTCATCGTCAATCTGATCTTTAAATGGAGCGTGATTATTTTCTGTACAAATTGGAAATGTCATTGATTTTGCTTGTTGAAAAAGAGGCCAAATTTCAATTACGATTCATCTAAAAATTAAACCTCGCTCGATTGGTACAACTACCCGGAACACTTTAATTT ]
consensusID : consensus_10971#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 693 fasta sequence
[TGTTTTCGTAGTGGATGTGGATATAGAACACGTGATAATGGAAGGTATGATAACTGTTCAGGAGTATAGCTCATAAAATATTCTGCAAACTGTCCAGGTATGACTGCCACAGGATATGCACCATTGGGAAATGTTGGATATTCTAATAACTTATAAATTCTCTGAGGAATGTGAATTTGCATTGTCTGTAAATCCCAATAACAACGTCTTGAACTCATACGTTCGGTAATCAAGCGATGATTGTAATCAGCAGCAGAATCTAACGCTGGTATGCGAGCTGCTTCAGCTCGAGCCTCTCCACGTTCAATACGAGCAGCTTCATACTGACGCTTTTGATTTTCGACAGCCGTTTTAAATTTTCGTCGACGAAACAAATCCGTCAAAGCAATGTGTATCTCTGGATAATCCTGTTGCAAAAGCTTCATAACATCATCAATTTTGAGTGCTGTGAGACCAAGGTCTGCACGACCAACAGGAACAATCCCCTCTTGTTGCAACCAAGATCGTTCATAAGCATCCATAGCGCGCCTAGCAAGATCAGGGTACTTGCGTTTAAAAGATTTGACCTTTAAAAAGTCAGCAAGTACTTCTTGAACTATGTATGACTCCTTCTCATGTTTTCCACCAGGAGATTCAGAATCACTATCAGCCCAGTCGTACTCGTAAATGTCCTCCAAGTTAACATTATCAGTA]
[-] EMBL CD197906 [TGTTTTCGTAGTGGATGTGGATATAGAACACGTGATAATGGAAGGTATGATAACTGTTCAGGAGTATAGCTCATAAAATATTCTGCAAACTGTCCAGGTATGACTGCCACAGGATATGCACCATTGGGAAATGTTGGATATTCTAATAACTTATAAATTCTCTGAGGAATGTGAATTTGCATTGTCTGTAAATCCCAATAACAACGTCTTGAACTCATACGTTCGGTAATCAAGCGATGATTGTAATCAGCAGCAGAATCTAACGCTGGTATGCGAGCTGCTT ]
[-] EMBL CD161822 [ TTGCATGGGCTGTAATTCCCAATAACAACGTCTTGAACTCATACGTTCGGTAGTCAAGCGATGATTGTAATCAGCAGCAGAATCTAACGCTCGTCTGCGAGCTGCTTCAGCTCGAGCCTCTCCACGTTCAATACGAGCAGCTTCATACTGACGCTTTTGATTTTCGACAGCCGTTTTAAATTTTCGTCGACGAAACAAATCCGTCAAAGCAATGTGTATCTCTGGATAATCCTGTTGCAAAAGCTTCATAACATCATCAATTTTGAGTGCTGTGAGACCAAGGTCTGCACGACCAACAGGAACAATCCCCTCTTGTTGCAACCAAGATCGTTCATAAGCATCCATAGCGCGCCTAGCAAGATCAGGGTACTTGCGTTTAAAAGATTTGACCTTTAAAAAGTCAGCAAGTACTTCTTGAACTATGTATGACTCCTTCTCATGTTTTCCACCAGGAGATTCAGAATCACTATCAGCCCAGTCGTACTCGTAAATGTCCTCCAAGTTAACATTATCAGTA]
[-] EMBL CD067297 [ ACCAAGATCGTTCATAAGCATCCATAGCGCGCCTAGCAAGATCAGGGTACTTGCGTTTAAAAGATTTGACCTTTAAAAAGTCAGCAAGTACTTCTTGAAATATGTATGACTCCTT ]
consensusID : consensus_10971#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 585 fasta sequence
[GATCTAGTTTATTTAAGTGAAATTATTAAATTACATAAAAAAATTGACAGCGTTGCGGCGCAAATTCACTTCAATCGGGTGGGCCTCAAAGTAGTCGTTGTCAATCCAATAATACTCGTTCTCAGTTTGGCCAGGAAACAAACGCAACTTATCACACAATATTACTTGACTACCAGATTTAAATGAATACGGTTGAGAAAGGAGCCATGAACGAAACTGTTGTATATGGTCCCAATAGCTGGTGGAATGACGCAAAATATCCAAACGAATGTGATCTCCTTCTGGAGTGATTGTGAATCCTGAAGCCTTTTCAACGACTAATTCCTTTAGTTCATCACATGCAGGATTTTCTATGGAACACTTGGCTTTGATTTGTTGTTGAATTTCTTCACTTTCCATTCCATCAATATTTGATTTGTTATTATTACTGTTTAACGAGAATCCAAATATTCTTCCTAATAGAGATGTTGATTTCTTTGCATTTACTTGAAGATTAGATTCTTTATAACTCATTAACTTTTTCTCCCAACATTTCGAACATCCTGTACAAATTGGAGTATAAGGGAAGAGAGCTAATTTCACACG]
[+] EMBL CD074141 [GATCTAGTTTATTTAAGTGAAATTATTAAATTACATAAAAAAATTGACAGCGTTGCGGCGCAAATTCACTTCAATCGGGTGGGCCTCAAAGTAGTCGTTGTCAATCCAATAATACTCGTTCTCAGTTTGGCCAGGAAACAAACGCAACTTATCACACAATATTACTTGACTACCAGATTTAAATGAATACGGTTGAGAAAGGAGCCATGAACGAAACTGTTGTATATGGTCCCAATAGCTGGTGGAATGACGCAAAATATCCAAACGAATGTGATCTCCTTCTGGAGTGATTGTGAATCCTGAAGCCTTTTCAACGACTAATTCCTTTAGTTCATCACATGCAGGATTTTCTATGGAACACTTGGCTTTGATTTGTTGTTGAATTTCTTCACTTTCCATTCCATCAATATTTGATTTGTTATTATTACTGTTTAACGAGAATCCAAATATTCTTCCTAATAGAGATGTTGATTTCTTTGCATTTACTTGAAGATTAGATTCTTTATAACTCATTAACTTTTTCTCCCAACATTTCGAACATCCTGTACAAATTGGAGTATA ]
[+] EMBL CD150619 [ AGTCGTTGTCAATCCAATAATACTCGTTCTCAGTTTGGCCAGGAAACAAACGCAACTTATCACACAATATTACTTGACCACCAGATTTAAATGAATACGGTTGAGAAAGGAGCCATGAACGAAACTGTTGTATATGGTCCCAATAGCTGGTGGAATGACGCAAAATATCCAAACGAATGTGATCTCCTTCTGGAGTGATTGTGAATCCTGAAGCCTTTTCAACGACTAATTCCTTTAGTTCATCACATGCAGGATTTTCTATGGAACACTTGGCTTTGATTTGTTGTTGAATTTCTTCACTTTCCATTCCATCAATATTTGATTTGTTATTATTACTGTTTAACGAGAATCCAAATATTCTTCCTAATAGAGATGTTGATTTCTTTGCA ]
[+] EMBL CD150615 [ AGTCGTTGTCAATCCAATAATACTCGTTCTCAGTTTGGCCAGGAAACAAACGCAACTTATCACACAATATTACTTGACTACCAGATTTAAATGAATACGGTTGAGAAAGGAGCCATGAACGAAACTGTTGTATATGGTCCCAATAGCTGGTGGAATGACGCAAAATATCCAAACGAATGTGATCTCCTTCTGGAGTGATTGTGAATCCTGAAGCCTTTTCAACGACTAATTCCTTTAGTTCATCACATGCAGGATTTTCTATGGAACACTTGGCTTTGATTTGTTGTTGAATTTCTTCACTTTCCATTCCATCAATATTTGATTTGTTATTATTACTGTTTAACGAGAATCCA ]
[-] EMBL CD150516 [ ATCACACAATATTACTTGACTACCAGATTTAAATGAATACGGTTGAGAAAGGAGCCATGAACGAAACTGTTGTATATGGTCCCAATAGCTGGTGGAATGACGCAAAATATCCAAACGAATGTGATCTCCTTCTGGAGTGATTGTGAATCCTGAAGCCTTTTCAACGACTAATTCCTTTAGTTCATCACATGCAGGATTTTCTATGGAACACTTGGCTTTGATTTGTTGTTGAATTTCTTCACTTTCCATTCCATCAATATTTGATTTGTTATTATTACTGTTTAACGAGAATCCAAATATTCTTCCTAATAGAGATGTTGATTTCTTTGCATTTACTTGAAGATTAGATTCTTTATAACTCATTAACTTTTTCTCCCAACATTTCGAACATCCTGTACAAATTGGAGAATAAGGGAAGAG ]
[-] EMBL CD150686 [ GTCCCAATAGCTGGTGGAATGACGCAAAATATCCAAACGAATGTGATCTCCTTCTGGAGTGATTGTGAATCCTGAAGCCTTTTCAACGACTAATTCCTTTAGTTCATCACATGCAGGATTTTCTATGGAACACTTGGCTTTGATTTGTTGTTGAATTTCTTCACTTTCCATTCCATCAATATTTGATTTGTTATTATTACTGTTTAACGAGAATCCAAATATTCTTCCTAATAGAGATGTTGATTTCTTTGCATTTACTTGAAGATTAGATTCTTTATAACTCATTAACTTTTTCTCCCAACATTTCGAACATCCTGTACAAATTGGAGTATAAGTAAGGCGAGCTAATTTCACACG]
consensusID : consensus_10971#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 163 fasta sequence
[TGCAGGGGAAATCAGATATGCACCATGGGGAGAAGTTGGATATTCTAATAACTTATAAATTCTCTGAGGAATGTGAATTTGCATTGTCTGTAAATCCCAATAACAACGTCTTGAACTCATACGTTCGGTAATCAAGCGATGATTGTAATCAGCAGCAAAATCT]
[+] EMBL CD067405 [TGCAGGGGAAATCAGATATGCACCATGGGGAGAAGTTGGATATTCTAATAACTTATAAATTCTCTGAGGAATGTGAATTTGCATTGTCTGTAAATCCCAATAACAACGTCTTGAACTCATACGTTCGGTAATCAAGCGATGATTGTAATCAGCAGCAAAATCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10971#1 TGTTTTCGTAGTGGATGTGGATATAGAACACGTGATAATGGAAGGTATGATAACTGTTCA 60
consensus_10971#3 ------------------------------------------------------------
consensus_10971#0 --------------------------AAACCGATCTAGTTTATTTAAGTGAAATTATTAA 34
consensus_10971#2 -------------------------------GATCTAGTTTATTTAAGTGAAATTATTAA 29
consensus_10971#1 GGAGTATAGCTCATAAAATATTCTGCAAACTGTCCAGGTATGACTGCCACAGGATATGCA 120
consensus_10971#3 --------------------------------------TGCAGGGGAAATCAGATATGCA 22
consensus_10971#0 ATCACATA----AAAAAATTGACAGCGTTGCGGCGCAAATTCACTTCAATCGGGTGGGCC 90
consensus_10971#2 ATTACATA----AAAAAATTGACAGCGTTGCGGCGCAAATTCACTTCAATCGGGTGGGCC 85
* * * **
consensus_10971#1 CCATTGGGAAATGTTGGATATTC--TAATAAC--TTATAAATTCTCTGAGGAATGTGAAT 176
consensus_10971#3 CCATGGGGAGAAGTTGGATATTC--TAATAAC--TTATAAATTCTCTGAGGAATGTGAAT 78
consensus_10971#0 TCA-AAGTAGTCGTTGTCAATCCAATAATACTCGTTCTCAGTTTGGCCAGGAA-ACAAAC 148
consensus_10971#2 TCA-AAGTAGTCGTTGTCAATCCAATAATACTCGTTCTCAGTTTGGCCAGGAA-ACAAAC 143
** * * **** ** * ***** ** * * ** ***** **
consensus_10971#1 TTGCATTGTCTGTAAATCCCAAT-AACAAC--GTCTTGAACTCATACGTTCGGTAATCAA 233
consensus_10971#3 TTGCATTGTCTGTAAATCCCAAT-AACAAC--GTCTTGAACTCATACGTTCGGTAATCAA 135
consensus_10971#0 GCAACTTATCACACAATATTACTTGACTACCAGATTTAAATGAATACGGTTGAGAAAGGA 208
consensus_10971#2 GCAACTTATCACACAATATTACTTGACTACCAGATTTAAATGAATACGGTTGAGAAAGGA 203
** ** *** * * ** ** * ** ** ***** * * ** *
consensus_10971#1 GCGATGATTGTAATCAGCAGCAGAATCTAACGCTGGTATGCGAGCTGCTTCAGCTCGAGC 293
consensus_10971#3 GCGATGATTGTAATCAGCAGCAAAATCT-------------------------------- 163
consensus_10971#0 GCCATGAACGAAACT-GTTGTATA-TATGGTCCCAATA-GCTGGTGGAATGACGCAAAAT 265
consensus_10971#2 GCCATGAACGAAACT-GTTGTATA-T--GGTCCCAATA-GCTGGTGGAATGACGCAAAAT 258
** **** * ** * * * * *
consensus_10971#1 CTCTCCACGTTCAATACGAGCAGCTTCATACTGACGCTTTTGATTTTCGACAGCCGTTTT 353
consensus_10971#3 ------------------------------------------------------------
consensus_10971#0 ATCCAAACG---AATGTGATCTCCTTCTTTAAAAAGTCAGCAAGTACTT---CTTGAACT 319
consensus_10971#2 ATCCAAACG---AATGTGATCTCCTTCT--GGAGTGATTGTGAATCCTGAAGCCTTTTCA 313
consensus_10971#1 AAATTTTCGTCGACGAAACAAATCCGTCAAAGCAATGTGTATCTCTGGATAATCCTGTTG 413
consensus_10971#3 ------------------------------------------------------------
consensus_10971#0 ATGTATGACTCCTTCTCATGTTTTCCACCAGGAGATTCAGAATCACTATCAGCCCAGTCG 379
consensus_10971#2 ACGACTAATTCCTTTAGTTCATCACATGCAGGATTTTCTATGGAACACTTGGCTTTGATT 373
consensus_10971#1 CAAAAGCTTCATAACATCATCAATTTTGAGTGCTGTGAGACCAAGGTCTGCACGACCAAC 473
consensus_10971#3 ------------------------------------------------------------
consensus_10971#0 T----ACTCGTAAATGTCCTCCAAGTTAA---CATTATCAGTAAGTCCTGAGATGGAAGT 432
consensus_10971#2 T----GTTGTTGAATTTCTTCACTTTCCA---TTCCATCAATA---TTTGATTTGTTATT 423
consensus_10971#1 AGGAACAATCCCCTCTTGTTGCAACCAAGATCGTTCATAAGCATCCATAGCGCGCCTAGC 533
consensus_10971#3 ------------------------------------------------------------
consensus_10971#0 AGAACGAGACATATCTGACTTCATTTTACTCTCACGTCTTGAAGGAGTCGCGGAGAGAGA 492
consensus_10971#2 ATTAC------TGTTTAACGAGAATCCAAATATTCTTCCTAATAGAGATGTTGA------ 471
consensus_10971#1 AAGATCAGGGTACTTGCGTTTAAAAGATTTGACCTTTAAAAAGTCAGCAAGTACTTCTTG 593
consensus_10971#3 ------------------------------------------------------------
consensus_10971#0 ATTACTGGACTGATTCGTCCGAGTCTTCTGTGTATCTGAGTCGCCATCATCATTCTTTAG 552
consensus_10971#2 -TTTCTTTGC--ATTTACTTGAAGATTAGATTCTTTATAACT--CATTAACTTTTTCTCC 526
consensus_10971#1 AACTATGTATGACTCCTTCTCATGTTTTCCACCAGGAGATTCAGAATCACTATCAGCCCA 653
consensus_10971#3 ------------------------------------------------------------
consensus_10971#0 GGGTGTACCAGGCAAAGTATCCACACTCATGTCCAGATCAAACATTACGGTCTCAT-CGT 611
consensus_10971#2 CAACATTTCGAACATCCTGTACAAATTGGAGTATAAGGGAAGAGAGCTAATTTCACACG- 585
consensus_10971#1 GTCGTACTCGTAAATGTCCTCCAAGTTAACATTATCAGTA-------------------- 693
consensus_10971#3 ------------------------------------------------------------
consensus_10971#0 CAATCTGATCTTTAAATGGAGCGTGATTATTTTCTGTACAAATTGGAAATGTCATTGATT 671
consensus_10971#2 ------------------------------------------------------------
consensus_10971#1 ------------------------------------------------------------
consensus_10971#3 ------------------------------------------------------------
consensus_10971#0 TTGCTTGTTGAAAAAGAGGCCAAATTTCAATTACGATTCATCTAAAAATTAAACCTCGCT 731
consensus_10971#2 ------------------------------------------------------------
consensus_10971#1 -----------------------------------------------------
consensus_10971#3 -----------------------------------------------------
consensus_10971#0 CGATTGGTACAACTACCCGGAACACTTTAATTTAACAAATCCCTCGTGCCGAA 784
consensus_10971#2 -----------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||