These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10987#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1899 fasta sequence [GGAGGTATGAATATTATCCAACTGGCTCTTTATGCTGCTGCTGGTGGTTTGGAACACGAAGCACTAGAACCTTTCTGGCATGTAGCTAGTATGGATGGTGACGAGCTGTATATGCTTAGAAATAAATCTAAATTGTATTTCCGTCGGACAGGTAAGTTATCCAATAATTTGGGCGATCGACTTCAGGCCTGTATCGACGAGAACAACGTACAAGGTGCTCTTGATTTATTGAAAGATCTAAATAAAACGAACATTGCATTAGCGTATACATTATTTGTACCAAGATTAATGTCCTCGGGCGTTTCCTTACAGGACTTATTGAAACAAACCGAAGATCATGAGATAATTAAGGCTTTACTGTTTGGATATGTATTTCGTGAATTAATATCAATACAATCAACAGACGATTTAAAATCACGTCTAACTAACTGTTCGGAATTAGTGAATGAGTATCGTGCTAAGGAATTACTACCGTACAATGATGTTGTTCGTTTAAACTCCTCTGTTTTAGTTAAATTGGTGACAAATATAATATCCGTTTCAGATATTGAAGAGATTGCAAAGTTGAATAAATCAAC-CGTAATGCATGACGTT-TTCGGCATTTTCG-GCCGTACACTGTCAAAACGTGCGTTACGTATGCTTTTCATGCAAGTTTTCGAAGCGTTAACGCTATCCCACCTCCGTTCTTTTCATGGCATTCCAAAA-AATGCTGTAATTCAACTTGTAGCTGATGTGTGCGCTCATCAAGATGTCACGTTTGCTCATGGTGGTTGGATGTTATCGAAATTGAGAGATGCTGATGTACCAACGCACATCATGGCAAAACTTTCTTCTAGTCGATCTGTGGCACTATCTTCATTTTCAAATATAAACGTTCTACTTTTTGATGATCGAGCGAGCAATGCAG-ACGGAAGAAACAAAGATGAAGATCCAGTAACTAATCAAGTGAAGCTGCTCCCTGAAGAATCTATACCTACTACCGCCGAATCACTTGTCAAAGCATCAAAAAATGATCCTGAAGAATTGGAAAAGGAATTAAAGTCAATTGAAAAGTCATGGAGATTACAAAAGAAATTCATTTTATTGAGTTATCTTGTAAATCTTGGATCAGAAGATGTCGTTGAACGTGTATTACGATTTTTACCGGATGAACATAAACGACAACTTGAACCAATGAAATCAATCGCACATATAATAAAATCATCCTTAGCAAATGCAAATTGTGACAAACCATCTTCAGAAAGTGTGAAGCAGTCAATTGAAAATTTACAAAATCTTTCATCTCAAGATTTATACGTTACAATGAGGGGTCCACACTTGGATACACTTTTCAGATGTTGGCCAACTGAACAAATTCCCGACTTGGTTATTATCACGAAAAAACTCTCCAAACTTGGTCTCAATTCTGTCAGTTTACAGTTGGCTGGAGTTTTGATTAATCGTGGGCTGAGTGACTTAGTTTCTACTTTGTTGGAGAATAACAAAACAGTTCCGTTTACTTTCTTGGTTGGTAATCCACGAAATTCATTGACGAAATCTGAATTTCTCGCTTCAGTGGAGTATCTAAAATCTGTTGACTCTCACATGTTCCCGGTTNTGTGGATTATTGTCTTCGCAATGCAGCTTTGTCAACAACGATGANCATTTCTACCAGTTAATTCGTACAGTAGTATCACCACCGTTCAATATGGATCTTCTTNCAGTCTGTATACCACCACTCTNNCAGNTTATATCATCGNTTGGGAGTGAGCANNATTTACCAGAGATTACTTCAGCTACCAGNCCAGTGTCAGAATTTTATGCATTNNAAGCAAGCTTNNCATGATACGAGCTTTCCCTACTTNTTTTNNNAACGATACATAGGTNTTTTAACATTTNATGGNTTAGNCCCCTGGGGTA] [+] EMBL CD065224 [GGAGGTATGAATATTATCCAACTGGCTCTTTATGCTGCTGCTGGTGGTTTGGAACACGAAGCACTAGAACCTTTCTGGCATGTAGCTAGTATGGATGGTGACGAGCTGTATATGCTTAGAAATAAATCTAAATTGTATTTCCGTCGGACAGGTAAGTTATCCAATAATTTGGGCGATCGACTTCAGGCCTGTATCGACGAGAACAACGTACAAGGTGCTCTTGATTTATTGAAAGATCTAAATAAAACGAACATTGCATTAGCGTATACATTATTTGTACCAAGATTAATGTCCTCGGGCGTTTCCTTACAGGACTTATTGAAACAAACCGAAGATCATGAGATAATTAAGGCTTTACTGTTTGGATATGTATTTCGTGAATTAATATCAATACAATCAACAGACGATTTAAAATCACGTCTAACTAACTGTTCGGAATTAGTGAATGAGTATCGTGCTAAGGAATTACTACCGTACAATGATGTTGTTCGTTTAAACTCCTCTGTTTTAGTTAAATTGGTGACAAATATAATATCCGTTTCAGATATTGAAGAGATCGCAAAGTTGAATAAATCAAC CGTAATGCATGACGTTNNTC GCATTTTCG GCCGTACACTGTCAAAACGTGCGTTACGTATGCTTTTCATGCc ] [+] EMBL CD158603 [ AATGTCCTCGGGCGTTTCCTTACAGGACTTATTGAAACAAACCGAAGATCATGAGATAATTAAGGCTTTACTGTTTGGATATGTATTTCGTGAATTAATATCAATACAATCAACAGACGATTTAAAATCACGTCTAACTAACTGTTCGGAATTAGTGAATGAGTATCGTGCTAAGGAATTACTACCGTACAATGATGTTGTTCGTTTAAACTCCTCTGTTTTAGTTAAATTGGTGACAAATATAATATCCGTTTCAGATATTGAAGAGATTGCAAAGTTGAATAAATCAAC CGTAATGCATGACGTT TTCGGCATTTTCG GCCGTACACTGTCAAAACGTGCGTTACGTATGCTTTTCATGCAAGTTTTCGAAGCGTTAACGCTATCCCACCTCCGTTCTTTTCATGGCATTCCAAAA AATGCTGTAATTCAACTTGTAGCTGATGTGTGCGCTCATCAAGATGTCACGTTTGCTCATGGTGGTTGGATGTTATCGAAATTGAGAGATGCTGATGTACCAACGCACATCATGGCAAAACTTTCTTCTAGTCGATCTGTGGCACTATCTTCA TTTNAAATATAAACGTTCTACTTTTTGATGATCGAGCGAGCAATGCAGNAC GAAGAAACAAAGATGAAGATTCAGTAACT ] [+] EMBL CD141813 [ TTGAAACAAACCGAAGATCATGAGATAATTAAGGCTTTACTGTTTGGATATGTATTTCGTGAATTAATATCAATACAATCAACAGACGATTTAAAATCACGTCTAACTAACTGTTCGGAATTAGTGAATGAGTATCGTGCTAAGGAATTACTACCGTACAATGATGTTGTTCGTTTAAACTCCTCTGTTTTAGTTAAATTGGTGACAAATATAATATCCGTTTCAGATATTGAAGAGATTGCAAAGTTGAACAAATCAAC CGTAATGCATGACGTT TTCGGCATTTTCG GCCGTACACTGTCAAAACGTGCGTTACGTATGCTTTTCATGCAAGTTTTCGAAGCGTTAACGCTATCCCACCTCCGTTCTTTTCATGGCATTCCAAAA AATGCTGTAATTCAACTTGTAGCTGATGTGTGCGCTCATCAAGATGTCACGTTTGCTCATGGTGGTTGGATGTTATCGAAATTGAGAGATGCTGATGTACCAACGCACATCAT ] [-] EMBL CD139045 [ GATATGTATTTCGTGAATTAATATCAATACAATCAACAGACGATTTATAATCACGTCTAACTAACTGTTCGGAATTAGTGAATGAGTATCGTGCTAAGGAATTACTACCGTACAATGATGTTGTTCGTTTAAACTCCTCTGTTTTAGTTAAATTGGTGACAAATATAATATCCGTTTCAGATATTGAAGAGATTGCAAAGTTGAATAAATCAACTCGTAATGCATGACGTT TTCGGCATTTTCGCACCGTACACTGTCAAAACGTGCGTTACGTATGCTTTTCATGCAAGTTTTCGAAGCGTTAACGCTATCCCACCTCCGTTCTTTTCATGGCATTCCAAAATAATGCTGTA ] [-] EMBL CD121319 [ ATTCAACTTGTAGCTGATGTGCGCGCTCATCAAGATGTCACGTTTGCTCATGTTGGTTGGATGTTATCGAAATTGAGAGATGCTGATGTACCAACGCACATCATGGCAAAACTTTCTTCTAGTCGATCTGTGGCACTATCTTCATTTTCAAATATAAACGTTCTACTTTTTGATGATCGA ] [-] EMBL CD158178 [ TAGCTGATGTGTGCGCTCATCAAGATGTCACGTTTGCTCATGGTGGTTGGATGTTATCGAAATTGAGAGATGCTGATGTACCAACGCACATCATGGCAAAACTTTCTTCTAGTCGATCTGTGGCACTATCTTCATTTTCAAATATAAACGTTCTACTTTTTGATGATCGAGCGAGCAATGCAG ACGGAAGAAACAAAGATGAAGATCCAGTAACTAATCAAGTGAAGCTGCTCCCTG ] [+] EMBL CD194225 [ GATGTTATCGAAATTGAGAGATGCTGATGTACCAACGCACATCATGGCAAAACTTTCTTCTAGTCGATCTGTGGCACTATCTTCATTTTCAAATATAAACGTTCTACTTTTTGATGATCGAGCGAGCAATGCAG ACGGAAGAAACAAAGATGAAGATCCAGTAACTAATCAAGTGAAGCTGCTCCCTGAAGAATCTATACCTACTACCGCCGAATCACTTGTCAAAGCATCAAAAAATGATCCTGAAGAATTGGAAAAGGAATTAAAGTCAATTGAAAAGTCATGGAGATTACAAAAGAAATTCATTTTATTGAGTTATCTTGTAAATCTTGGATCAGAAGATGTCGTTGAACGTGTATTACGATTTTTACCGGATGAACATAAACGACAACTTGAACCAATGAAATCAATCGCACATATAATAAAATCATCCTTAGCAAATGCAAATTGTGACAAACCATCTTCAGAAAGTGTGAAGCAGTCAATTGAAAATTTACAAAATCTTTCATCTCAAGATTTA ] [+] EMBL CD149331 [ cagctgAG ACGGAAAAAACAAAGATGAAGATCCAGTAACTAATCAAGTGAAGCTGCTCCCTGAAGAATCTATACCTACTACCGCCGAATCACTTGTCAAAGCATCAAAAAATGATCCTGAAGAATTGGAAAAGGAATTAAAGTCAATTGAAAAGTCATGGAGATTACAAAAGAAATTCATTTTATTGAGTTATCTTGTAAATCTTGGATCACAAGATG ] [+] EMBL CD149287 [ CAAAGATGAAGATCCAGTAACTAATCAAGTGAAGCTGCTCCCTGAAGAATCTATACCTACTACCGCCGAATCACTTGTCAAAGCATCAAAAAATGATCCTGAAGAATTGGAAAAGGAATTAAAGTCAATTGAAAAGTCATGGAGATTACAAAAGAAATTCATTTTATTGAGTTATCTTGTAAATCTTGGATCAGAAGATGTCGTTGAACGTGTATTACGATTTTTACCGGATGAACATAAACGACAACTTGAACCAATGAAATCAATCGCACATATAATAAAATCATCCTTAGCAAATGCAAATTGTGACAAACCATCTTCAGAAAGTGTG ] [+] EMBL CD149445 [ CAAAGATGAAGATCGAGTAACTAATCAAGTGAAGCTGCTCCCTGAAGAATCTATACCTACTACCGCCGAATCACTTGTCAAAGCATCAAAAAATGATCCTGAAGAATTGGAAAAGGAATTAAAGTCAATTGAAAAGTCATGGAGATTACAAAAGAAATTCATTTTATTGAGTTATCTTGTAAATCTTGGATCAGAAGATGTCGTTGAACGTGTATTACGATTTTTACCGGATGAACATAAACGACAACTTGAACCAATGAAATCAATCGCACATATAATAAAATCATCCTTAGCAAATGCAAATTGTGACAAACCATCTT ] [+] EMBL CD149455 [ CAAAGATGAAGATCGAGGGGCTAATCAAGTGAAACTGCTCCCTGAAGAATCTATACCTACTACCGCCGAATCACTTGTCAAAGCATCAAAAAATGATCCTGAATAATTGGAAAAGGAATTAAAGTCAATTGAAAAGTCATGGAGATTACAAAAGAAATTCATTTTATTGAGTTATCTTGTGAATCTTGGATCACAAGATGTCGTTGAACGTGTATTACGATTATTACCGGCTGAACATAAACGACAACTTGAACCAATGAAATCAATCGCACATATAATAAAATCATCCTTACCAAATGCACATGGTGACAAACCATCTTCAGAAAGTGTGAAGCAGTCAATTGAAAATTTACAAAATCTTTCATCTCAAGATTTATACGTTACAATGAGGGGTCCACACTTGGATACACTTTTCAGATGTTGGCCAACTGAACAAATTCCCGACTTGGTTA ] [+] EMBL CD149343 [ CAAAGATGAAGATCCAGTAACTAATCAAGTGAAGCTGCTCCCTGAAGAATCTATACCTACTACCGCCGAATCACTTGTCAAAGCATCAAAAAATGATCCTGAAGAATTGG AAAGGAAATAAAGTCAATTG AAAGTCAT ] [+] EMBL CD082478 [ AGAATCTATACCTACTACCGCCGAATCACTTGTCAAAGCATCAAAAAATGATCCTGAAGAATTGGAAAAGGAATTAAAGTCAATTGAAAAGTCATGGAGATTACAAAAGAAATTCATTTTATTGAGTTATCTTGTAAATCTTGGATCAGAAGATGTCGTTGAACGTGTATTACGATTTTTACCGGATGAACATAAACGACAACTTGAACCAATGAAATCAATCGCACATATAATAAAATCATCCTTAGCAAATGCAAATTGTGACAAACCATCTTCAGAAAGTGTGAAGCAGTCAATTGAAAATTTACAAAATCTTTCATCTCAAGATTTATACGTTACAATGAGGGGTCCACACTTGGATACACTTTTCAGATGTTGGCCAACTGAACAAATTCCCGACTTGGTTATTATCACGAAAAAACTCTCCAAACTTGGTCTCAATTCTGTCAGTTTACAGTTGGCTGGAGTTTTGATTAATCGTGGGCTGAGTGACTTAGTTTCTACTTTGTTGGAGAATAACAAAACAGTTCCGTTTACTTTCTTGGTTGGTAATCCACGAAATTCATTGACGAAATCTGAATTTCTCGCTTCAGTGGAGTATCTAAAATCTGTTGACTCTCACATGTTCCCGGTTNTGTGGATTATTGTCTTCGCAATGCAGCTTTGTCAACAACGATGANCATTTCTACCAGTTAATTCGTACAGTAGTATCACCACCGTTCAATATGGATCTTCTTNCAGTCTGTATACCACCACTCTNNCAGNTTATATCATCGNTTGGGAGTGAGCANNATTTACCAGAGATTACTTCAGCTACCAGNCCAGTGTCAGAATTTTATGCATTNNAAGCAAGCTTNNCATGATACGAGCTTTCCCTACTTNTTTTNNNAACGATACATAGGTNTTTTAACATTTNATGGNTTAGNCCCCTGGGGTA] [-] EMBL CD149670 [ GTTATCTTGTAAATCTTGGATCAAAAGATGTCGTTGAACGTGTATTACGATTTTTACCGGATGAACATAAACGACAACTTGAACCAATGAAATCAATCGCACATATAATAAAATCATCCTTAGCAAATGCAAATTGTGACAAACCATCTTCAGAAAGTGTGAAGCAGTCAATTGAAAATTTACAAAATCTTTCATCTCAAGATTTATACGTTACAATGAGGGGTCCACACTTGGATACACTTTTCAGATGTTGGCCAACTGAACAAATTCCCGACTTGGTTATTATCACGAAAAAACTCTCCAAACTTGGTCTCAATTCTGTCAGTTTACAGTTGGCTGGAGTTTTGATTAATCGTGGGCTGAGTGACTTAGTTTCTACTTTGTTGGAGAATAACAAAACAGTTCCGTTTACTTTCTTGGTTGGTAATCCACGAAATTCATCGACGAAATCTGAATTTCTCGCTTCAGTGGAGTATNTAAAATCTGTTGACTCTCAgctg ] [-] EMBL CD149462 [ ATTTTTACGGGATGAACATAAACGACAACTTGAACCAATGAAATCAATCGCACATATAATAAAATCATCCTTAGCAAATGCAAATTGTGACAAACCATCTTCAGAAAGTGTGAAGCAGTCAATTGAAAATTTACAAAATCTTTCATCTCAAGATTTATACGTTACAATGAGGGGTCCACACTTGGATACACCTTTCAGATGTTGGCCAACTGAACAAATTCCCGACTTGGTTATTATCACGAAAAAACTCTCCAAACTTGGTCTCAATTCTGTCAGTTTACAGTTGGCTGGAGTTTTGATTAATCGTGGGCTGAGTGACTTAGTTTCTACTTTGTTGGAGAATAACAAAACAGTTCCGTTTACTTTCTTGGTTGGTAATCCACGAAATTCATTGACGAAATCTGAATTTCTCGCTTCAGCCGAGTATCTAAAA ] [-] EMBL CD149148 [ CAAAATCTTTCATCTCAAGATTTATACGTTACAATGAGGGGTCCACACTTGGATACACCTTTCAGATGTTGGCCAACTGAACAAATTCCCGACTTGGTTATTATCACGAAAAAACTCTCCAAACTTGGTCTCAATTCTGTCAGTTTACAGTTGGCTGGAGTTTTGATTAATCGTGGGCTGAGTGACTTAGTTTCTACTTTGTTGGAGAATAACAAAACAGTTCCGTTTACTTTCTTGGTTGGTAATCCACGAAATTCATTGACGAAATCTGAATTTCTCGCTTCAGTGGAGTATCTAAAA ] consensusID : consensus_10987#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 606 fasta sequence [GACTTGGTTATTATCACGAAAAAACTCTCCAAACTTGGTCTCAATTCTGTCAGTTTACAGTTGGCTGGAGTTTTGATTAATCGTGGGCTGAGTGACTTAGTTTCTACTTTGTTGGAGAATAACAAAACAGTTCCGTTTACTTTCTTGGTTGGTAATCCACGAAATTCATTGACGAAATCTGAATTTCTCGCTTCAGTGGAGTATCTAAAATCTGTTGACTCTCAACATGTTCCCGGTTTTGTGGATTATTGTCTTCGCAATGCAGCTTTGTCAACAAACGATGACAATTTCTACCAGTTAATTCGTACAGTAGTATCACCACCGTTCAATATGGATCTTCTTCAAGTCTGTATACAACCCACTCTCCAAGTTTTATATCATCGTTTGGAAGTGAGCAAAAATTTACCAGAAGATATACTTCAAGCTACACAGCCAGTTGTCCAGAAATTTAGTGCATTAAAAGCAAAAGCTTCCAATTGAATCACGAAGCTCTCCCCCTCACTTCTTTCTTCAAACCGCAATACCATAGGTTTCTTTATGAACAATTTTAATTGTTTTTAGTCATCATTGTGTATAATAAATTATACAAATCAGTTTTGGCCCTCG] [-] EMBL CD076076 [GACTTGGTTATTATCACGAAAAAACTCTCCAAACTTGGTCTCAATTCTGTCAGTTTACAGTTGGCTGGAGTTTTGATTAATCGTGGGCTGAGTGACTTAGTTTCTACTTTGTTGGAGAATAACAAAACAGTTCCGTTTACTTTCTTGGTTGGTAATCCACGAAATTCATTGACGAAATCTGAATTTCTCGCTTCAGTGGAGTATCTAAAATCTGTTGACTCTCAACATGTTCCCGGTTTTGTGGATTATTGTCTTCGCAATGCAGCTTTGTCAACAAACGATGACAATTTCTACCAGTTAATTCGTACAGTAGTATCACCACCGTTCAATATGGATCTTCTTCAAGTCTGTATACAACCCACTCTCCAAGTTTTATATCATCGTTTGGAAGTGAGCAAAAATTTACCAGAAGATATACTTCAAGCTACACAGCCAGTTGTCCAGAAATTTAGTGCATTAAAAGCAAAAGCTTCCAATTGAATCACGAAGCTCTCCCCCTCACTTCTTTCTTCAAACCGCAATACCATAGGTTTCTTTATGAACAATTTTAATTGTTTTTAGTCATCATTGTGTATAATAAATT ] [-] EMBL AI068006 [ TCAATTCTGTCAGTTTACAGTTGGCTGGAGTTTTGATTAATCGTGGGCTGAGTGACTTAGTTTCTACTTTGTTGGAGAATAACAAAACAGTTCCGTTTACTTTCTTGGTTGGTAATCCACGAAATTCATTGACGAAATCTGAATTTCTCGCTTCAGTGGAGTATGTAAAGTCTGTTGACTCTCAACATGTTCCCGGTTTTGTGGATTATTGTCTTCGCAATGCAGCTTTGTCAACAAACGATGACAATTTCTACCAGTTAATTCGTACAGTAGTATCACCACCGTTCAATATGGATCTTCTTCAAGTCTGTATACAACCCACTCTCCAAGTTTTATATCATCGTTTGGAAGTGAGCAAAAATTTACCAGAAGATATACTTCAAGCTACACAGCCAGTTGTCCAGAAATTTAGTGCATTAAAAGCAAAAGCTTCCAATTGAATCACGAAGCTCTCCCCCTCACTTCTTTCTTCAAACCGCAATACCATAGGTTTCTTTATGAACAATTTTAATTGTTTTTAGTCATCATTGTGTATAATAAATTATACAAATCAGT ] [-] EMBL CD084221 [ GTGACTTAGTTTCTACTTTGTTGGAGAATAACAAAACAGTTCCGTTTACTTTCTTGGTTGGTAATCCACGAAATTCATTGACGAAATCTGAATTTCTCGCTTCAGTGGAGTATCTAAAATCTGTTGACTCTCAACATGTTCCCGGTTTTGTGGATTATTGTCTTCGCAATGCAGCTTTGTCAACAAACGATGACAATTTCTACCAGTTAATTCGTACAGTAGTATCACCACCGTTCAATATGGATCTTCTTCAAGTCTGTATACAACCCACTCTCCAAGTTTTATATCATCGTTTGGAAGTGAGCAAAAATTTACCAGAAGATATACTTCAAGCTACACAGCCAGTTGTCCAGAAATTTAGTGCATTAAAAGCAAAAGCTTCCAATTGAATCACGAAGCTCTCCCCCTCACTTCTTTCTTCAAACCGCAATACCATAGGTTTCTTTATGAACAATTTTAATTGTTTTTAGTCATCATTGTGTATAATAAATTATACAAATCAGTTTTGGCCCTCG] [-] EMBL CD141681 [ ATTGACGAAATCTGATTCNNTCGCTTCAGTGGAGTATCTAAAATCTGTTGACTCTCAACATGTTCCCGGTTTTGTGGATTATTGTCTTCGCAATGCAGCTTTGTCAACAAACGATGACAATTTCTACCAGTTAATTCGTACAGTAGTATCACCACCGTTCAATATGGATCTTCTTCAAGTCTGTATACAACCCACTCTCCAAGTTTTATATCATCGTTTGGAAGTGAGCAAAAATTTACCAGAAGATATACTTCAAGCTACACAGCCAGTTGTCCAGAAATTTAGTGCATTAAAAGCAAAAGCTTCCAATTGAATCACGA ] [-] EMBL AI067827 [ CGAAATCTG ATTTCTCGCTTCAGTGGAGTATCTAAAGTCTGTTGACTCTCAACATGTTCCCGGTTATGTGGATTATTGTCTTCGCAATGCAGCTTTGTCAACAAACGATGACAATTTGTACCAGTTAATTCGTACAGTAGTATCTCCACCGTTCAATATGGATCTTCTTCAAGTCTGTATACAACCCACTCTCCAAGTTTTATATCATCGTTTGGAAGTGAGCAAAAATTTACCAGAAGATATACTTCAAGCTACACAGCCAGTTGTCCAGAAATTTAGTGCATTAAAAGCAAAAGCTTCCAATTGAATCACGAAGCTCTCCCCCTCACTTCTTTCTTCAAACCGCAATACCATAGGTTTCTTTATGAACAATTTTAATTGTTTTTAGTCATCATTGTGTATAATAAATTATACAAATCAGT ] [-] EMBL AI067813 [ CGAAATCTGAATTTCTCGCTTCAGTGGAGTATCTAAAGTCTGTTGACTCTCAACATGTTCCCGGTTGTGTGGATTATTGTCTTCGCAATGCAGCTTTGTCAACAAACGATGACAATTTCTACCAGTTAATTCGTACAGTAGTATCACCACCGTTCAATATGGATCTTCTTCAAGTCTGTATACAACCCACTCTCCAAGTTTTATATCATCGTTTGGAAGTGAGCAAAAATTTACCAGAAGATATACTTCAAGCTACACAGCCAGTTGTCCAGAAATTTAGTGCATTAAAAGCAAAAGCTTCCAATTGAATCACGAAGCTCTCCCCCTCACTTCTTTCTTCAAACCGCAATACCATAGGTTTCTTTATGAACAATTTTAATTGTTTTTAGTCATCATTGTGTATAATAAATTATACAAATCAGT ] [-] EMBL AI067652 [ ACATGTTCCCGGTTTTGTGGATTATTGTCTTCGCAATGCAGCTTTGTCAACAAACGATGACAATTTGTACCAGTTAATTCGTACAGTAGTATCACCACCGTTCAATATGGATCTTCTTCAAGTCTGTATACAACCCACTCTCCAAGTTTTATATCATCGTTTGGAAGTGAGCAAAAATTTACCAGAAGATATACTTCAAGCTACACAGCCAGTTGTCCAGAAATTTAGTGCATTAAAAGCAAAAGCTTCCAATTGAATCACGAAGCTCTCCCCCTCACTTCTTTCTTCAAACCGCAATACCATAGGTTTCTTTATGAACAATTTTAATTGTTTTTAGTCATCATTGTGTATAATAAATTATACAAATCAGT ] [-] EMBL AI067864 [ TTTTGTGGATTATTGTCTTCGCAATGCAGGTTTGTCAACAAACGATGACAATTTCTCCCAGTTAATTCGTACAGTAGTATCACCACCGTTGAATATGGATCTTCTTCAAGTCTGTATACAACCCACTCTCCAAGTTTTATATCATCGTTTGGAAGTGAGCAAAAGTTTACCAGAAGATATACTTCAAGCTACACAGCCAGTTGTCCGGAAATTTGGTGCATTAAAAGCAAAAGCTTCCAATTGAATCACGAAGCTCTCCCCCTCACTTCTTTCTTCAAACCGCAATACCATAGGTTTCTTTATGAACAATTTTAATTGTTTTTAGTCATCATTGTGTATAATAAATTTTACAAATCAGT ] [-] EMBL AI067643 [ nTGTGGATTATTGTCTTCGCAATGCAGCTTTGTCAACAAACGATGACAATTTCTACCAGTTAATTCGTACAGTAGTATCACCACCGTTCAATATGGATGTTCTTCAAGTCTGTATACAACCCACTCTCCAAGTTTTATATCATCGTTTGGAAGTGAGCAAAAATTTACCAGAAGATATACTTCAAGCTACACAGCCAGTTGTCCAGAAATTTAGTGCATTAAAAGCAAAAGCTTCCAATTGAATCACGAAGCTCTCCCCCTCACTTCTTTCTTCAAACCGCAATACCATAGGTTTCTTTATGAACAATTTTAATTGTTTTTAGTCATCATTGTGTATAATAAATTATACAAATCAGT ] [-] EMBL AI068106 [ AAATTTAGCAGAAGATATACTTCAAGCTACACATCCAGTTGTCCAGAAATTTCGTGCACTAAAAGCAAACGCTTCCAATTGGATCACGAAGCTTTCCCCCTCACTTCTTTCTTCAAACCGCAATACCATAGGTTTCTTTATGAACAATTTTAATTGTTTTTAGTTATCATTGTGTATAATAAATTATACAAATCAGT ] consensusID : consensus_10987#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 318 fasta sequence [TTGTCAACAAACGATGACAATTTCTACCAGTTAATTCGTACAGTAGTATCACCACCGTTCAATATGGATCTTCTTCAAGTCTGTATACAACCCACTCTCCAAGTTTTATATCATCGTTTGGGAGTGAGCAAAAATGTAAGTCCTGATTTTGTGTTTCATTTTTCTGAGTTAAGAAAAACTTAATTTGAAAATAGCCCTCATAGATACCTTTTAGTAATATAAACGTCCATCACGATTTATTGATTGTTGTAGATCCAGTGGTTCGAAGGAATTCTTTGTTTGGGTAAATAAACCAACTGGTCAGACAAACTTTCCCAA] [+] EMBL CD096515 [TTGTCAACAAACGATGACAATTTCTACCAGTTAATTCGTACAGTAGTATCACCACCGTTCAATATGGATCTTCTTCAAGTCTGTATACAACCCACTCTCCAAGTTTTATATCATCGTTTGGGAGTGAGCAAAAATGTAAGTCCTGATTTTGTGTTTCATTTTTCTGAGTTAAGAAAAACTTAATTTGAAAATAGCCCTCATAGATACCTTTTAGTAATATAAACGTCCATCACGATTTATTGATTGTTGTAGATCCAGTGGTTCGAAGGAATTCTTTGTTTGGGTAAATAAACCAACTGGTCAGACAAACTTTCCCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10987#0 GGAGGTATGAATATTATCCAACTGGCTCTTTATGCTGCTGCTGGTGGTTTGGAACACGAA 60 consensus_10987#1 ------------------------------------------------------------ consensus_10987#2 ------------------------------------------------------------ consensus_10987#0 GCACTAGAACCTTTCTGGCATGTAGCTAGTATGGATGGTGACGAGCTGTATATGCTTAGA 120 consensus_10987#1 ------------------------------------------------------------ consensus_10987#2 ------------------------------------------------------------ consensus_10987#0 AATAAATCTAAATTGTATTTCCGTCGGACAGGTAAGTTATCCAATAATTTGGGCGATCGA 180 consensus_10987#1 ------------------------------------------------------------ consensus_10987#2 ------------------------------------------------------------ consensus_10987#0 CTTCAGGCCTGTATCGACGAGAACAACGTACAAGGTGCTCTTGATTTATTGAAAGATCTA 240 consensus_10987#1 ------------------------------------------------------------ consensus_10987#2 ------------------------------------------------------------ consensus_10987#0 AATAAAACGAACATTGCATTAGCGTATACATTATTTGTACCAAGATTAATGTCCTCGGGC 300 consensus_10987#1 ------------------------------------------------------------ consensus_10987#2 ------------------------------------------------------------ consensus_10987#0 GTTTCCTTACAGGACTTATTGAAACAAACCGAAGATCATGAGATAATTAAGGCTTTACTG 360 consensus_10987#1 ------------------------------------------------------------ consensus_10987#2 ------------------------------------------------------------ consensus_10987#0 TTTGGATATGTATTTCGTGAATTAATATCAATACAATCAACAGACGATTTAAAATCACGT 420 consensus_10987#1 ------------------------------------------------------------ consensus_10987#2 ------------------------------------------------------------ consensus_10987#0 CTAACTAACTGTTCGGAATTAGTGAATGAGTATCGTGCTAAGGAATTACTACCGTACAAT 480 consensus_10987#1 ------------------------------------------------------------ consensus_10987#2 ------------------------------------------------------------ consensus_10987#0 GATGTTGTTCGTTTAAACTCCTCTGTTTTAGTTAAATTGGTGACAAATATAATATCCGTT 540 consensus_10987#1 ------------------------------------------------------------ consensus_10987#2 ------------------------------------------------------------ consensus_10987#0 TCAGATATTGAAGAGATTGCAAAGTTGAATAAATCAACCGTAATGCATGACGTTTTCGGC 600 consensus_10987#1 ------------------------------------------------------------ consensus_10987#2 ------------------------------------------------------------ consensus_10987#0 ATTTTCGGCCGTACACTGTCAAAACGTGCGTTACGTATGCTTTTCATGCAAGTTTTCGAA 660 consensus_10987#1 ------------------------------------------------------------ consensus_10987#2 ------------------------------------------------------------ consensus_10987#0 GCGTTAACGCTATCCCACCTCCGTTCTTTTCATGGCATTCCAAAAAATGCTGTAATTCAA 720 consensus_10987#1 ------------------------------------------------------------ consensus_10987#2 ------------------------------------------------------------ consensus_10987#0 CTTGTAGCTGATGTGTGCGCTCATCAAGATGTCACGTTTGCTCATGGTGGTTGGATGTTA 780 consensus_10987#1 ------------------------------------------------------------ consensus_10987#2 ------------------------------------------------------------ consensus_10987#0 TCGAAATTGAGAGATGCTGATGTACCAACGCACATCATGGCAAAACTTTCTTCTAGTCGA 840 consensus_10987#1 ------------------------------------------------------------ consensus_10987#2 ------------------------------------------------------------ consensus_10987#0 TCTGTGGCACTATCTTCATTTTCAAATATAAACGTTCTACTTTTTGATGATCGAGCGAGC 900 consensus_10987#1 ------------------------------------------------------------ consensus_10987#2 ------------------------------------------------------------ consensus_10987#0 AATGCAGACGGAAGAAACAAAGATGAAGATCCAGTAACTAATCAAGTGAAGCTGCTCCCT 960 consensus_10987#1 ------------------------------------------------------------ consensus_10987#2 ------------------------------------------------------------ consensus_10987#0 GAAGAATCTATACCTACTACCGCCGAATCACTTGTCAAAGCATCAAAAAATGATCCTGAA 1020 consensus_10987#1 ------------------------------------------------------------ consensus_10987#2 ------------------------------------------------------------ consensus_10987#0 GAATTGGAAAAGGAATTAAAGTCAATTGAAAAGTCATGGAGATTACAAAAGAAATTCATT 1080 consensus_10987#1 ------------------------------------------------------------ consensus_10987#2 ------------------------------------------------------------ consensus_10987#0 TTATTGAGTTATCTTGTAAATCTTGGATCAGAAGATGTCGTTGAACGTGTATTACGATTT 1140 consensus_10987#1 ------------------------------------------------------------ consensus_10987#2 ------------------------------------------------------------ consensus_10987#0 TTACCGGATGAACATAAACGACAACTTGAACCAATGAAATCAATCGCACATATAATAAAA 1200 consensus_10987#1 ------------------------------------------------------------ consensus_10987#2 ------------------------------------------------------------ consensus_10987#0 TCATCCTTAGCAAATGCAAATTGTGACAAACCATCTTCAGAAAGTGTGAAGCAGTCAATT 1260 consensus_10987#1 ------------------------------------------------------------ consensus_10987#2 ------------------------------------------------------------ consensus_10987#0 GAAAATTTACAAAATCTTTCATCTCAAGATTTATACGTTACAATGAGGGGTCCACACTTG 1320 consensus_10987#1 ------------------------------------------------------------ consensus_10987#2 ------------------------------------------------------------ consensus_10987#0 GATACACTTTTCAGATGTTGGCCAACTGAACAAATTCCCGACTTGGTTATTATCACGAAA 1380 consensus_10987#1 ---------------------------------------GACTTGGTTATTATCACGAAA 21 consensus_10987#2 ------------------------------------------------------------ consensus_10987#0 AAACTCTCCAAACTTGGTCTCAATTCTGTCAGTTTACAGTTGGCTGGAGTTTTGATTAAT 1440 consensus_10987#1 AAACTCTCCAAACTTGGTCTCAATTCTGTCAGTTTACAGTTGGCTGGAGTTTTGATTAAT 81 consensus_10987#2 ------------------------------------------------------------ consensus_10987#0 CGTGGGCTGAGTGACTTAGTTTCTACTTTGTTGGAGAATAACAAAACAGTTCCGTTTACT 1500 consensus_10987#1 CGTGGGCTGAGTGACTTAGTTTCTACTTTGTTGGAGAATAACAAAACAGTTCCGTTTACT 141 consensus_10987#2 ------------------------------------------------------------ consensus_10987#0 TTCTTGGTTGGTAATCCACGAAATTCATTGACGAAATCTGAATTTCTCGCTTCAGTGGAG 1560 consensus_10987#1 TTCTTGGTTGGTAATCCACGAAATTCATTGACGAAATCTGAATTTCTCGCTTCAGTGGAG 201 consensus_10987#2 ------------------------------------------------------------ consensus_10987#0 TATCTAAAATCTGTTGACTCTCA-CATGTTCCCGGTTNTGTGGATTATTGTCTTCGCAAT 1619 consensus_10987#1 TATCTAAAATCTGTTGACTCTCAACATGTTCCCGGTTTTGTGGATTATTGTCTTCGCAAT 261 consensus_10987#2 ------------------------------------------------------------ consensus_10987#0 GCAGCTTTGTCAACAA-CGATGANCATTTCTACCAGTTAATTCGTACAGTAGTATCACCA 1678 consensus_10987#1 GCAGCTTTGTCAACAAACGATGACAATTTCTACCAGTTAATTCGTACAGTAGTATCACCA 321 consensus_10987#2 ------TTGTCAACAAACGATGACAATTTCTACCAGTTAATTCGTACAGTAGTATCACCA 54 ********** ****** *********************************** consensus_10987#0 CCGTTCAATATGGATCTTCTTNCAGTCTGTATACCACC-ACTCTNNCAGNTT-ATATCAT 1736 consensus_10987#1 CCGTTCAATATGGATCTTCTTCAAGTCTGTATACAACCCACTCTCCAAGTTTTATATCAT 381 consensus_10987#2 CCGTTCAATATGGATCTTCTTCAAGTCTGTATACAACCCACTCTCCAAGTTTTATATCAT 114 ********************* *********** *** ***** ** ** ******* consensus_10987#0 CGNTTGGGAGTGAGCANNA-TTTA---CCAGA-GAT-TACTTCA-GCTACCAGNCCA-GT 1788 consensus_10987#1 CGTTTGGAAGTGAGCAAAAATTTA---CCAGAAGATATACTTCAAGCTACACAGCCA-GT 437 consensus_10987#2 CGTTTGGGAGTGAGCAAAAATGTAAGTCCTGATTTTGTGTTTCATTTTTCTGAGTTAAGA 174 ** **** ******** * * ** ** ** * * **** * * * * consensus_10987#0 G--TCAGAATTTTA-TGCATTNNAAGCAA---GCTTNNCATGATAC----GAGCTTTCCC 1838 consensus_10987#1 TGTCCAGAAATTTAGTGCATTAAAAGCAAA-AGCTTCCAATTGAATCACGAAGCTCTCCC 496 consensus_10987#2 AAAACTTAATTTGAAAATAGCCCTCATAGATACCTTTTAGTAATAT----AAACGTCCAT 230 * ** ** * * * *** * * * * * consensus_10987#0 T---ACTTNTTTTNNNAA----CGATAC-ATAGGTNTTTT----AACA--TTTNATGGNT 1884 consensus_10987#1 CCTCACTTCTTTCTTCAAACCGCAATACCATAGGTTTCTTTATGAACAATTTTAATTGTT 556 consensus_10987#2 CACGATTTATTGATTG------TTGTAGATCCAGTGGTTCGAAGGAATTCTTTGTTTGGG 284 * ** ** ** ** * * *** * * consensus_10987#0 T--AGNCCCC-TGGGGTA-------------------------------- 1899 consensus_10987#1 TTTAGTCATCATTGTGTATAATAAATTATACAAATCAGTTTTGGCCCTCG 606 consensus_10987#2 TAAATAAACCAACTGGTCAGACAAACTTTCCCAA---------------- 318 * * * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||