These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10998#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1212 fasta sequence [TGATCTGGTGTGTCCCATATGCCTCTATCCGCCCATCACGCCACGAATGGGTAGATGTGGACACATCTACTGTTGGCCCTGTGCACTGCAATATTTAAAATACGAAAATGAATCGGATAGCAAGAAGTGCTCTGTCTGTCCCTCCTTGTTATCATTTAATGAGCTCAAAAGGGTATCCCTAACCCATATTACCCCAACGAAGGTCGGCGATAGCATATGCTTGACGCTAGTTAAGCGTTCAGGACTTTGTGTGACTCCTTCTTTATCTCTTCAAACTCATGAAGCTACATCTGAAACTTTTTTCGGATCTGTTTGCGTTACTGACCCAATAACAATGAAAAACATTCACGAGTCGGAGATCGATCAACTTCGTACTTATAGAGCTATTTGTGAAGTAGATGGAAACAACACGGAGCTGATTCCATTCATTGACTTTGCCTTTGAAGAGCTGAAACGCGAAGAGGTGCTTCAAAAATCTTGTAGTACCAGTTCAACTAAGCCTTGCAAATCTTGCAGTCAAGATGTTAATGGTATTTCTTCAAATGAAACCTATTTCTACCAAGCTATAAATAGCCAACCTATTTTCTTAGATAGTCTGGGATGGCGATGCCTACTAACTGAGTACAAAGAAACACAAAATCTTCCGAAGGAGATTTTTGCAACCGTTGCATCAACTAAAAATTATCGGATGAACTCATCCTTACGAAAACCTCTGAGGTACCTGAGCTATTTACCTGATGGATACGCCTTCAGTCTAGTGGAAATCAAGCTAGAACCACCGTTGGTATCTGAGTTGACATTATCTCACTTTGCCACATCGTTGAATAACCGCGCATTGGAGCGAGATCGAAGTCGTCTTGAGGATCTGAAACTTACTGAGTTAAAAGAGGCAGCTGAGAACCAATTCGCGTCACTGCGATGTAAGGAATTTTGGTGTAGATTGATGCACACTTATGCGTCCAATGTCCTATTAAGTTCCACAGAATAACAACCCTTAAATACGTTCATAAAAATGATACCCCATTGTTTTTCGATAATCATATTTTCTACCACAATTGCATTGCTTCAGTGTGTTGTACTAACGTATCTTCTACGTAACTTCAGCTCCAGGTTTTGTTCTCAGTGGTCATGCAACTTTATCAGATAAACAAGGTAGGTTATTTATTGTTCTAAAGTTTACATTTCATAGAAGTACAACTTGACCCCTCAAAT] [-] EMBL CD088214 [TGATCTGGTGTGTCCCATATGCCTCTATCCGCCCATCACGCCACGAATGGGTAGATGTGGACACATCTACTGTTGGCCCTGTGCACTGCAATATTTAAAATACGAAAATGAATCGGATAGCAAGAAGTGCTCTGTCTGTCCCTCCTTGTTATCATTTAATGAGCTCAAAAGGGTATCCCT ] [-] EMBL CD094034 [ GGACACATCTACTGTTGGCCCTGTGCACTGCAATATTTAAAATACGAAAATGAATCGGATAGCAAGAAGTGCTCTGTCTGTCCCTCCTTGTTATCATTTAATGAGCTCAAAAGGGTATCCCTAACCCATATTACCCCAACGAAGGTCGGCGATAGCATATGCTTGACGCTAGTTAAGCGTTCAGGACTTTGTGTGACTCCTTCTTTATCTCTTCAAACTCATGAAGCTACATCTGAAACTTTTTTCGGATCTGTTTGCGTTACTGACCCAATAACAATGAAAAACATTCACGAGTCGGAGATCGATCAACTTCGTACTTATAGAGCTATTTGTGAAGTAGATGGAAACAACACGGAGCTGATTCCATTCATTGACT ] [+] EMBL CD194148 [ GGCGATAGCATATGCTTGACGCTAGTTAAGCGTTCAGGACTTTGTGTGACTCCTTCTTTATCTCTTCAAACTCATGAAGCTACATCTGAAACTTTTTTCGGATCTGTTTGCGTTACTGACCCAATAACAATGAGAAACATTCACGAGTCGGAGATCGATCAACTTCGTACTTATAGAGCTATTTGTGAAGTAGATGGAAACAACACGGAGCTGATTCCATTCATTGACTTTGCCTTTGAAGAGCTGAAACGCGAAGAGGTGCTTCAAAAATCTTGTAGTACCAGTTCAACTAAGCCTTGCAAATCTTGCAGTCAAGATGTTAATGGTATTTCTTCAAATGAAACCTATTTCTACCAAGCTATAAATAGCCAACCTATTTTCTTAGATAGTCTGGGATGGCGATGCCTACTAACTGAGTACAAAGAAACACAAAATCTTCCGAAGGAGATTTTTGCAACCGTTGCATCAACTAAAAA TATCGGATGAACTCATCCTTACGAAAACCT ] [-] EMBL CD167780 [ TGACGCTAGTTAAGCGTTCAGGACTTTGTGTGACTCCTTCTTTATCTCTTCAAACTCATGAAGCTACATCTGAAACTTTTTTCGGATCTGTTTGCGTTACTGACCCAATAACAATGAAAAACATTCACGAGTCGGAGATCGATCAACTTCGTACTTATAGAGCTATTTGTGAAGTAGATGGAAACAACACGGAGCTGATTCCATTCATTGACTTTGCCTTTGAAGAGCTGAAACGCGAAGAGGTGCTTCAAAAATCTTGTAGTACCAGTTCAACTAAGCCTTGCAAATCTTGCAGTCAAGATGTTAATGGTATTTCTTCAAATGAAACCTATTTCTACCAAGCTATAAATAGCCAACCTATTTTCTTAGATAGTCTGGGATGGCGATGCCTACTAACTGAGTACAAAGAAACACAAAATCTTCCGAAGGAGATTTTTGCAACCGTTGCATCAACTAAAAATTATCGGATGAACTCATCCTTACGAAAACCTCTGAGGTACCTGAGCTATTTACCTGATGGATACGCCTTCAGTCTAGTGGAAATCAAGCTAGAACCACCGTTGGTATCTGAGTTGACATTATCTCA ] [+] EMBL CD168946 [ AGTAGATGGAAACAACACGGAGCTGATTCCATTCATTGACTTTGCCTTTGAAGAGCTGAAACGCGAAGAGGTGCTTCAAAAATCTTGTAGTACCAGTTCAACTAAGCCTTGCAAAACTTGCAGTCAAGATGTTAATGGTATTTCTTCAAATGAAACCTATTTCTACCAAGCTATAAATAGCCAACCTATTTTCTTAGATAGTCTGGGATGGCGATGCCTACTAACTGAGTACAAAGAAACACAAAATCTTCCGAAGGAGATTTTTGCAACCGTTGCATCAACTAAAAATTATCGGATGAACTCATCCTTACGAAAACCTCTGAGGTACCTGAGCTATTTACCTGATGGATACGCCTTCAGTCTAGTGGAAATCAAGCTAGAACCACCGTTGGTATCTGAGTTGACATTATCTCACTTTGCCACATCGTTGAATAACCGCGCATTGGAGCGAGATCGAAGTCGTCTTGAGGATCTGAAACTTACTGAGTTAAAAGAGGCAGCTGAGAACCAATTCGCGTCACTGCGATGTAAGGAATTTTGGTGTAGATTGATGCACACTTATGCGTCCAATGTCCTATTAAGTTCCACAGAATAACAACCCTTANATACGTTCATA ] [+] EMBL CD169472 [ AGTAGATGGAAACAACACGGAGCTGATTCCATTCATTGACTTTGCCTTTGAAGAGCTGAAACGCGAAGAGGTGCTTCAAAAATCTTGTAGTACCGGTTCAACTAAGCCTTGCAAATCTTGCAGTCAAGATGTTAATGGTATTTCTTCAAATGAAACCTATTTCTACCAAGCTATAAATAGCCAACCTATTTTCTTAGATAGTCTGGGATGGCGATGCCTACTAACTGAGTACAAAGAAACACAAAATCTTCCGAAGGAGATTTTTGCAACCGTTGCATCAACTAAAAATTATCGGATGAACTCATCCTTACGAAAACCTCTGAGGTACCTGAGCTATTTACCTGATGGATACGCCTTCAGTCTAGTGGAAATCAAGCTAGAACCACCGTAGGTATCTGAGTTGACATTATCTCACTTTGCCACATCGTTGAATAACCGCGCATTGGAGCGAGATCGAAGTCGTCTTGAGGATCTGAAACTTACTGAGTTAAAAGAGGCAGCTGAGAACCAATTCGCGTCACTGCGATGTAAGGAATTTTGGTGTAGATTGATGCACACTTATGCGTCCAATGTCCTATTAAGTTCCAC ] [+] EMBL CD083496 [ gGGAAACAACACGGAGCTGATTCCATTCATTGACTTTGCCTTTGAAGAGCTGAAACGCGAAGAGGTGCTTCAAAAATCTTGTAGTACCAGTTCAACTAAGCCTTGCAAATCTTGCAGTCAAGATGTTAATGGTATTTCTTCAAATGAAACCTATTTCTACCAAGCTATAAATAGCCAACCTATTTTCTTAGATAGTCTGGGATGGCGATGCCTACTAACTGAGTACAAAGAAACACAAAATCTTCCGAAGGAGATTTTTGCAACCGTTGCATCAACTAAAAATTATCGGATGAACTCATCCTTACGAAAACCTCTGAGGTACCTGAGCTATTTACCTGATGGATACGCCTTCAGTCTAGTGGAAATCAAGCTAGAACCACCGTTGGTATCTGAGTTGACATTATCTCACTTTGCCACATCGTTGAATAACCGGGCATTGGAGCGAGATCG ] [+] EMBL CD200184 [ CGTCACTGCGATGTAAGGAATTTTGGTGTAGATTGATGCACACTTATGCGTCCAATGTCCTATTAAGTTCCACAGAATAACAACCCTTAAATACGTTCATAAAAATGATACCCCATTGTTTTTCGATAATCATATTTTCTACCACAATTGCATTGCTTCAGTGTGTTGTACTAACGTATCTTCTACGTAACTTCAGCTCCAGGTTTTGTTCTCAGTGGTCATGCAACTTTATCAGATAAACAAGGTAGGTTATTTATTGTTCTAAAGTTTACATTTCATAGAAGTACAACTTGACCCCTCAAAT] [+] EMBL CD200214 [ CGTCACTGCGATGTAAGGAATTTTGGTGTAGATTGATGCACACTTATGCGTCCAATGTCCTATTAAGTTCCACAGAATAACAACCCTTAAATACGTTCATAAAAATGATACCCCATTGTTTTTCGATAATCATATTTTCTACCACAATTGCATTGCTTCAGTGTGTTGTACTAACGTATCTTCTACGTAACTTCAGCTCCAGGTTTTGTTCTCAGTGGTCATGCAACTTTATCAGATAAACAAGGTATGCAATTTAaccg ] [+] EMBL CD200209 [ CGTCACTGCGATGTAAGGAATTTTGGTGTAGATTGATGCACACTTATGCGTCCAATGTCCTATTAAGTTCCACAGAATAACAACCCTTAAATACGTTCATAAAAATGATACCCCATTGTTTTTCGATAATCATATTTTCTACCACAATTGCATTGCTTCAGTGTGTTGTACTAACGTATCTTCTACGTAACTTCAGCTCCAGGTTTTGTTCTCAGTGGTCATGCAACTTTATCAGATAAACAAGGTAGGTTATTTATTGTTCTAAAGTTTACATTTCATAGAAGTACAACTTGACCCCTCAAAT] [-] EMBL CD130217 [ TAAAAATGATACCCCATTGTTTTTCGATAATCATATTTTCTACCACAATTGCATTGCTTCAGTGTGTTGTACTAACGTATCTTCTACGTAACTTCAGCTCCAGGTTTTGTTCTCAGTGGTCATGCAACTTTATCAGATAAACAAGGTAGGTTATTTATTGTTCTAAAGTTTACATTTCATAGAAGTACAACTTGAC ] consensusID : consensus_10998#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 837 fasta sequence [TATAAACAAGTATTAGGAGCAATTGACAGATTTTATTGCCAGTCAGTTTCTAAAGGATTAATTCTCGATGTATAGAAGCAATCTCTTCTAGGTTGGATCTCGTTTCGCACCTGTAATCTGCTTCAAGAAGATATTTAGCTACTAGTCATAAACGGGTATACAACACGTCATTCTGCCTCATGCTACAACACTGATTTAATGCAGCCCATGCACCTCCAAACAGTAGAGGATTTCCATAGCAATTAGCATTCCAATCATATATGTTTTTAATGTATTTCATGTGTGTGAGAGAGTTAGGGTTGAGGTTAATCACAATGGAACTTATTTACTGAATATAGATATGTATGGTCACATTTTAATCACTGCACTTGTGAGTGCTAATGATAACACTCGGCTGCTCAAAATGTAATGGTGGGACAAAAACTGAACTTCAGTAAAATTTACCAGCTAGGCTTTATGACCGTTTGAGTGAACTGTTTTTCGGTCGGCGCATTTTTACCAAAATTTCTACTTTTTATAAAATATACTTTACGTATTTAGGTTTCTCGCTCTGGTGCACTCAATGTTGTTGGTCCAGATCGTGTTGTTCATTTCTCGCGAAGTCCTCCGAAACCGANCAATCCTAAACGCTTCGATATCAATTCCGAATCTTGGCCTACCTTAGGCGANACTTCGAANAGCTGAAGAAATATATTTAAGAGGAAGATTGACTAGTCTAGTCTAGTCAGTCGGACAGAAAACTCGAGTGCCTGGCAACTATATATATTNCCCAATGGNACAGATTTTTATGGCTGCCAGCCAATTGACTATCTCAATGAAGTTATACTCTACTAGTAA] [+] EMBL CD080159 [TATAAACAAGTATTAGGAGCAATTGACAGATTTTATTGCCAGTCAGTTTCTAAAGGATTAATTCTCGATGTATAGAAGCAATCTCTTCTAGGTTGGATCTCGTTTCGCACCTGTAATCTGCTTCAAGAAGATATTTAGCTACTAGTCATAAACGGGTATACAACACGTCATTCTGCCTCATGCTACAACACTGATTTAATGCAGCCCATGCACCTCCAAACAGTAGAGGATTTCCATAGCAATTAGCATTCCAATCATATATGTTTTTAATGTATTTCATGTGTGTGAGAGAGTTAGGGTTGAGGTTAATCACAATGGAACTTATTTACTGAATATAGATATGTATGGTCACATTTTAATCACTGCACTTGTGAGTGCTAATGATAACACTCGGCTGCTCAAAATGTAATGGTGGGACAAAAACTGAACTTCAGTAAAATTTACCAGCTAGGCTTTATGACCGTTTGAGTGAACTGTTTTTCGGTCGGCGCATTTTTACCAAAATTTCTACTTTTTATAAAATATACTTTACGTATTTAGGTTTCTCGCTCTGGTGCACTCAATGTTGTTGGTCCAGATCGTGTTGTTCATTTCTCGCGAAGTCCTCCGAAACCGANCAATCCTAAACGCTTCGATATCAATTCCGAATCTTGGCCTACCTTAGGCGANACTTCGAANAGCTGAAGAAATATATTTAAGAGGAAGATTGACTAGTCTAGTCTAGTCAGTCGGACAGAAAACTCGAGTGCCTGGCAACTATATATATTNCCCAATGGNACAGATTTTTATGGCTGCCAGCCAATTGACTATCTCAATGAAGTTATACTCTACTAGTAA] consensusID : consensus_10998#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence [TGAAACCTATTCTACCAAGCTATAAATAGCCAACCTATTNTCTTAGATAGTCTGGGATGGCGATGCCTACTAACTGAGTACAAAGAAACACAAAGTCTTCCGAAGGAGATTTTTGCAACCGTTGCATCAACTAAAAATTATCGGATGAACCCATCCTTACGAAAACCTCTGAGGTACCTGAGCTATTTACCTGATGGATACGCCTTCAGTCTAGTGGAAATCAAGCTAGAACCACCGTTGGTATCTGAGTTGACATTATCTCACTTTGCCACATCGTTGAATAACCGCGCATTGGAGCGAGATCGAAGTCGTCTTGAGGATCTGAAACTTACTGAGTTAAAAGAGGCAGCTGAGAACCAATTCGCGTCACTGCGTAAGATAACGGTTAATGGGTTGGTTTTTCTTTTATAAGTAGATGCATGCTCTTTACATATTTAAGGGAAGTGGTAATGCAATGATACGTTCGTATCAAAGCTTTCGTTCTTAATATCTAATCGTTAATCCAGCTCTCGACCAATCATTTTTCATGACTTACGATATCTACCAAACTTGTTCATATTATAACAACTTTTCTATGGTTTGCTTTGATGAAATATGACTGGATAAACCCATCACA] [-] EMBL CD129946 [TGAAACCTATTCTACCAAGCTATAAATAGCCAACCTATTNTCTTAGATAGTCTGGGATGGCGATGCCTACTAACTGAGTACAAAGAAACACAAAGTCTTCCGAAGGAGATTTTTGCAACCGTTGCATCAACTAAAAATTATCGGATGAACCCATCCTTACGAAAACCTCTGAGGTACCTGAGCTATTTACCTGATGGATACGCCTTCAGTCTAGTGGAAATCAAGCTAGAACCACCGTTGGTATCTGAGTTGACATTATCTCACTTTGCCACATCGTTGAATAACCGCGCATTGGAGCGAGATCGAAGTCGTCTTGAGGATCTGAAACTTACTGAGTTAAAAGAGGCAGCTGAGAACCAATTCGCGTCACTGCGTAAGATAACGGTTAATGGGTTGGTTTTTCTTTTATAAGTAGATGCATGCTCTTTACATATTTAAGGGAAGTGGTAATGCAATGATACGTTCGTATCAAAGCTTTCGTTCTTAATATCTAATCGTTAATCCAGCTCTCGACCAATCATTTTTCATGACTTACGATATCTACCAAACTTGTTCATATTATAACAACTTTTCTATGGTTTGCTTTGATGAAATATGACTGGATAAACCCATCACA] consensusID : consensus_10998#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 555 fasta sequence [TTTTTTTTTTTTTTTTTTTGTGAGCATATCCATTTACTTAAGTAGGAGTAATAGACATTTCATTTGAAGAATATGTCAAATTTGGCTTGGCAAGCCATGAAAAAATTCTGTTCCATTTGGGAAATATAATATAGTTTGCCAGGCACTCGAGTTTTCTGTCCGACTGACTAGACTAGACTAGTCAATCTTCCTCTTAAATATATTTCTTCAGCTTTTCGAAGTTTCGCCTAAGGTAGGCCAAGATTCGGAATTGATATCGAAGCGTTTAGGATTTGTCGGTTTCGGAGGACTTCGCGAGAAATGAGCAACACGATCTGGACCAACAACATTGAGTGCACCAGAGCGAGAAACTTCAGCAAAACTGATTGGTAAAGTTTTCTTCAATTTTGTATTTTGAGTTGCAGTTGAGAGTGGGACGAAATTTGAGGGGTCAAGTTGTACTTCTTGTTTATCTGATAAAGTTGCATGACCACTGAGAACAAAACCTGGAGGCAGTGACGCGAATTGGTTCTCAGCTGCCTCTTTT-ACTCAGTAAG-TTCAGATCCTCAGAACGAC] [+] EMBL AI395573 [TTTTTTTTTTTTTTTTTTTGTGAGCATATCCATTTACTTAAGTAGGAGTAATAGACATTTCATTTGAAGAATATGTCAAATTTGGCTTGGCAAGCCATGAAAAAATTCTGTTCCATTTGGGAAATATAATATAGTTTGCCAGGCACTCGAGTTTTCTGTCCGACTGACTAGACTAGACTAGTCAATCTTCCTCTTAAATATATTTCTTCAGCTTTTCGAAGTTTCGCCTAAGGTAGGCCAAGATTCGGAATTGATATCGAAGCGTTTAGGATTTGTCGGTTTCGGAGGACTTCGCGAGAAATGAGCAACACGATCTGGACCAACAACATTGAGTGCACCAGAGCGAGAAACTTCAGCAAAACTGATTGGGAAAGTTTTCTTCAATTTTGTATTTTGAGTTGCAGTTGAGAGTGGGACCAAATTTGAGGGGTCAAGTTGTACTT ] [-] EMBL CD116656 [ GACATTTCATTTGAAGAATATGTCAAATTTGGCTTGGCAAGCCATGTAAAAATTCTGTTCCATTTGGGAAATATAATATAGTTTGCCAGGCACTCGAGTTTTCTGTCCGACTGACTAGACTAGATTAGTCAATCTTCCTCTTAAATATATTTCTTCAGCTTTTCGAAGTTTCGCCTAAGGTAGGCCAAGATCCGGAATTGATATCGAAGCGTTTAGGATTTGTCGGTTTCGGAGGACTTCGCGAGAAATGAGCAACACGATCTGGACCAACAACATTGAGTGCACCAGAGCGAGAAACTTCAGCAAAACTGATTGGTAAAGTTTTCTTCAATTTCGTATT ] [+] EMBL CD144683 [ TTTCATTTGAAGAATATGTCAAATTTGGCTTGGCAAGCCATGAAAAAGTTCTGTTCCATTTGGGAAATATAATATAGTTTGCCAGGCACTCGAGTTTTCTGTCCGACTGACTAGACTAGACTAGTCAATCTTCCTCTTAAATATATTTCTTCAGCTTTTCGAAGTTTCGCCTAAGGTAGGCCAAGATTCGGAATTGATATCGAAGCGTTTAGGATTTGTCGGTTTCGGAGGACTTCGCGAGAAATGAGCAACACGATCTGGACCAACAACATTGAGTGCACCAGAGCGAGAAACTTCAGCAAAACTGATTGGTAAAGTTTTCTTCAATTTTGTATTTTGAGTTGCAGTTGAAAGTGGGACGAAATTTGAGGGGTCAAGTTGTACTTCTTGTTTATCTGATAAAGTTGCATGACCACTGAGAACAAAACCTGGAGGCAGTGACGCGAATTGGTTCTCAGCTGCCTCTTTT ACTCAGTAAG TTCAGATCCTCAGAACGA ] [+] EMBL CD145903 [ TTTCTTCAGCTTTTCGAAGTTTCGCCTAAGGTAGGCCAAGATTCGGAATTGATATCGAAGCGTTTAGGATTTGTCGGTTTCGGAGGACTTCGCGAGAAATGAGCAACACGATCTGGACCAACAACATTGAGTGCACCAGAGCGAGAAACTTCAGCAAAACTGATTGGTAAAGTTTTCTTCAATTTTGTATTTTGAGTTGCAGTTGAGAGTGGGACGAAATTTGAGGGGTCAAGTTGTACTTC ] [+] EMBL CD182354 [ AGAAATGAGCAACACGATCTGGACCAACAACATTGAGTGCACCAGAGCGAGAAACTTCAGCAAAACTGATTGGAAAAGTTTTCTTCAATTTTGTATTTTGAGTTGCAGTTGAGAGTGGGACGAAATTTGAGGGGTCAAGTTGTACTTCTTGTTTATCTGATAAAGTTGCATGACCACTGAGAACAAAACCTGGAGGCAGTGACGCGAATTGGTTCTCAGCTGCCTCTTTTAACTCAGTAAGTTTCAGATCCTCAAGACGAC] consensusID : consensus_10998#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 325 fasta sequence [TTTTTTTTTTTTTTTTGTGAGCATATCCATTTACTTAAGTAGGAGTAATAGACATTTCATTTGAAGAATATGTCAAATTTGGCTTGGCAAGCCATGAAAAAATTCTGTTCCATTTGGGAAATATAATATAGTTTGCCAGGCACTCGAGTTTTCTGTCCGACTGACTAGACTAGACTAGTCAACCTTCCCCTTAAAAAAATTCCTCAACCTTTCCAAATTTCCCCTAAAGGAAGGCAAGATTCCGGAATGGTAATCAAAGCGTTTAGGATTTGCCGGTTTCGGAGGATTTCGCGAAAAATGCGAAACACTATGGGGCCAAAAAATT] [+] EMBL AI395337 [TTTTTTTTTTTTTTTTGTGAGCATATCCATTTACTTAAGTAGGAGTAATAGACATTTCATTTGAAGAATATGTCAAATTTGGCTTGGCAAGCCATGAAAAAATTCTGTTCCATTTGGGAAATATAATATAGTTTGCCAGGCACTCGAGTTTTCTGTCCGACTGACTAGACTAGACTAGTCAACCTTCCCCTTAAAAAAATTCCTCAACCTTTCCAAATTTCCCCTAAAGGAAGGCAAGATTCCGGAATGGTAATCAAAGCGTTTAGGATTTGCCGGTTTCGGAGGATTTCGCGAAAAATGCGAAACACTATGGGGCCAAAAAATT] consensusID : consensus_10998#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 294 fasta sequence [AACCGACCTGCATTGGAGCGAGATCGAAGTCGTCTTGAGGATCTGAAACTTACTGAGTTAAAAGAGGCAGCTGAGAACCAATTCGCGTCACTGCTGTGTTGTACTAACGTACCTTCTACGTAACTTCAGCTCCAGGTTTTGTTCTCAGTGGTCATGCAACTTTATCAGATAAACAAGAAGTACAACTTGACCCCTCAAATTTCGTCCCACTCTCAACTGCAACTCAAAATACAAAATTGAAGAAAACTTTACCAATCAGTTTTGCTGAAGTTTCTCGCTCTGGTGCACTCAATG] [+] EMBL CD157554 [AACCGACCTGCATTGGAGCGAGATCGAAGTCGTCTTGAGGATCTGAAACTTACTGAGTTAAAAGAGGCAGCTGAGAACCAATTCGCGTCACTGCTGTGTTGTACTAACGTACCTTCTACGTAACTTCAGCTCCAGGTTTTGTTCTCAGTGGTCATGCAACTTTATCAGATAAACAAGAAGTACAACTTGACCCCTCAAATTTCGTCCCACTCTCAACTGCAACTCAAAATACAAAATTGAAGAAAACTTTACCAATCAGTTTTGCTGAAGTTTCTCGCTCTGGTGCACTCAATG] consensusID : consensus_10998#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 286 fasta sequence [CGTCACTGCGATGTAAGGAATTTTGGTGTAGATTGATGCACACTTATGCGTCCAATGTCCTATTAAGTTCCACAGAATAACAACCCTTAAATACGTTCATAAAAATGATACCCCATTGTTTTTCGATAATCATATTTTCTACCACAATTGCATTGCTTCAGTGTGTTGTACTAACGTATCTTCTACGTAACTTCAGCTCCAGGTTTTGTTCTCAGTGGTCATGCAACTTTATCAGATAAACAAGAAGTACAACTTGACCCCTCAAATTTCGTCCCACTCTCAGCTN] [+] EMBL CD149224 [CGTCACTGCGATGTAAGGAATTTTGGTGTACATTGATGCACACTTATGCGTCCAATGTCCTATTAAGTTCCACAGAATAACAACCCTTAAATACGTTCATAAAAATGATACCCCATTGTTTTTCGATAATCATATTTTCTACCACAATTGCATTGCTTCAGTGTGTTGTACTAACGTATCTTCTACGTAACTTCAGCTCCAGGTTCTGTTCTCAGTGGTCATGCAACTTTATCATAT ] [+] EMBL CD200172 [CGTCACTGCGATGTAGGGAGTTTTGGTGTAGATTGATGCACACTTATGCGTCCAATGTCCTATTAAGTTCCACAGAATAACAACCCTTAAATACGTTCATAAAAATGATACCCCATTGTTTTTCGATAATCATATTTTCTACCACAATTGCATTGCTTCAGTGTGTTGTACTAACGTATCTTCTACGTAACTTCAGCTCCAGGTTTTGTTCTCAGTGGTCATGCAACTTTATCAGATAAACAAGAAGTACAACTTGACCCCTCAAAT ] [+] EMBL CD200195 [CGTCACTGCGATGTAAGGAATTTTGGTGTAGATTGATGCACACTTATGCGTCCAATGTCCTATTAAGTTCCACAGAATAACAACCCTTAAATACGTTCATAAAAATGATACCCCATTGTTTTTCGATAATCATATTTTCTACCACAATTGCATTGCTTCAGTGTGTTGTACTAACGTATCTTCTACGTAACTTCAGCTCCAGGTTTTGTTCTCAGTGGTCATGCAACTTTATCAGATAAACAAGAAGTACAACTTGACCCCTCAAAT ] [+] EMBL CD200196 [CGTCACTGCGATGTAAGGAATTTTGGTGTAGATTGATGCACACTTATGCGTCCAATGTCCTATTAAGTTCCACAGAATAACAACCCTTAAATACGTTCATAAAAATGATACCCCATTGTTTTTCGATAATCATATTTTCTACCACAATTGCATTGCTTCAGTGTGTTGTACTAACGTATCTTCTACGTAACTTCAGCTCCAGGTTTTGTTCTCAGTGGTCATGCAACTTTATCAGATAAACAAGAAGTACAACTTGACCCCTCAAAT ] [+] EMBL CD200227 [CGTCACTGCGATGTAAGGAATTTTGGTGTAGATTGATGCACACTTATGCGTCCAATGTCCTATTAAGTTCCACAGAATAACAACCCTTAAATACGTTCATAAAAATGATACCCCATTGTTTTTCGATAATCATATTTTCTACCACAATTGCATTGCTTCAGTGTGTTGTACTAACGTATCTTCTACGTAACTTCAGCTCCAGGTTTTGTTCTCAGTGGTCATGCAACTTTATCAGATAAACAAGAAGTACAACTTGACCCCTCAAAT ] [-] EMBL CD149634 [ GTCACTGCGATGTAAGGAATTTTGGTGTAGATTGATGCACACTTATGCGTCCAATGTCCTATTAAGTTCCACAGAATAACAACCCTTAAATACGTTCATAAAAATGATACCCCATTGTTTTTCGATACTCATATTTTCTACCACAATTGCATTGCTTCAGTGTGTTGTACTAACGTATCTTCTACGTAACTTCAGCTCCAGGTTTTGTTCTCAGTGGTCATGCAACTTTATCAGATAAAC AAGTACAACTTGACCCCTCAAATTTCGTCCCACTCTCAGCTN] [-] EMBL CD200213 [ GTCACTGCGATGTAAGGAATTNTGGTGTAGATTGATGCACACTTATGCGTCCAATGTCCTATTAAGTTCCACAGAATAACAACCCTTANATACGTTCATAAAAATGATACCCCATTGTTTTTCGATAATCATATTTTCTACCACAATTGCATTGCTTCAGTGTGTTGTACTAACGTATCTTCTACGTAACTTCAGCTCCAGGTTTTGTTCTCAGTGGTCATGCAACTTTATCAGATAAACAAGAAGTACAACTTGACCCCTCAAATT ] [-] EMBL CD200215 [ GTCACTGCGATGTAAGGAATTTTGGTGTAGATTGATGCACACTTATGCGTCCAATGTCCTATTAAGTTCCACAGAATAACAACCCTTAAATACGTTCATAAAAATGATACCCCATTGTTTTTTGATAATCATATTTTCTACCACAATTGCATTGCTTCAGTGTGTTGTACTAACGTATCTTCTACGTAACTTCAGCTCCAGGTTTTGTTCTCAGTGGTCATGCAACTTTATCAGATAAACAAGAAGTACAACTTGACCCCTCAAATc ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10998#0 TGATCTGGTGTGTCCCATATGCCTCTATCCGCCCATCACGCCACGAATGGGTAGATGTGG 60 consensus_10998#6 ------------------------------------------------------------ consensus_10998#2 ------------------------------------------------------------ consensus_10998#5 ------------------------------------------------------------ consensus_10998#3 ------------------------------------------------------------ consensus_10998#4 ------------------------------------------------------------ consensus_10998#1 ------------------------------------------------------------ consensus_10998#0 ACACATCTACTGTTGGCCCTGTGCACTGCAATATTTAAAATACGAAAATGAATCGGATAG 120 consensus_10998#6 ------------------------------------------------------------ consensus_10998#2 ------------------------------------------------------------ consensus_10998#5 ------------------------------------------------------------ consensus_10998#3 ------------------------------------------------------------ consensus_10998#4 ------------------------------------------------------------ consensus_10998#1 ------------------------------------------------------------ consensus_10998#0 CAAGAAGTGCTCTGTCTGTCCCTCCTTGTTATCATTTAATGAGCTCAAAAGGGTATCCCT 180 consensus_10998#6 ------------------------------------------------------------ consensus_10998#2 ------------------------------------------------------------ consensus_10998#5 ------------------------------------------------------------ consensus_10998#3 ------------------------------------------------------------ consensus_10998#4 ------------------------------------------------------------ consensus_10998#1 ------------------------------------------------------------ consensus_10998#0 AACCCATATTACCCCAACGAAGGTCGGCGATAGCATATGCTTGACGCTAGTTAAGCGTTC 240 consensus_10998#6 ------------------------------------------------------------ consensus_10998#2 ------------------------------------------------------------ consensus_10998#5 ------------------------------------------------------------ consensus_10998#3 ------------------------------------------------------------ consensus_10998#4 ------------------------------------------------------------ consensus_10998#1 ------------------------------------------------------------ consensus_10998#0 AGGACTTTGTGTGACTCCTTCTTTATCTCTTCAAACTCATGAAGCTACATCTGAAACTTT 300 consensus_10998#6 ------------------------------------------------------------ consensus_10998#2 ------------------------------------------------------------ consensus_10998#5 ------------------------------------------------------------ consensus_10998#3 ------------------------------------------------------------ consensus_10998#4 ------------------------------------------------------------ consensus_10998#1 ------------------------------------------------------------ consensus_10998#0 TTTCGGATCTGTTTGCGTTACTGACCCAATAACAATGAAAAACATTCACGAGTCGGAGAT 360 consensus_10998#6 ------------------------------------------------------------ consensus_10998#2 ------------------------------------------------------------ consensus_10998#5 ------------------------------------------------------------ consensus_10998#3 ------------------------------------------------------------ consensus_10998#4 ------------------------------------------------------------ consensus_10998#1 ------------------------------------------------------------ consensus_10998#0 CGATCAACTTCGTACTTATAGAGCTATTTGTGAAGTAGATGGAAACAACACGGAGCTGAT 420 consensus_10998#6 ------------------------------------------------------------ consensus_10998#2 ------------------------------------------------------------ consensus_10998#5 ------------------------------------------------------------ consensus_10998#3 ------------------------------------------------------------ consensus_10998#4 ------------------------------------------------------------ consensus_10998#1 ----------------------------------------------TATAAACAAGTATT 14 consensus_10998#0 TCCATTCATTGACTTTGCCTTTGAAGAGCTGAAACGCGAAGAGGTGCTTCAAAAATCTTG 480 consensus_10998#6 ------------------------------------------------------------ consensus_10998#2 ------------------------------------------------------------ consensus_10998#5 ------------------------------------------------------------ consensus_10998#3 ------------------------------------------------------------ consensus_10998#4 ------------------------------------------------------------ consensus_10998#1 AGGAGCAATTGACAGATTTTATTGCCAGTCAGTTTCTAAAGGATTAATTCTCGATGTATA 74 consensus_10998#0 TAGTACCAGTTCAACTAAGCCTTGCAAATCTTGCAGTCAAGATGTTAATGGTATTTCTTC 540 consensus_10998#6 ------------------------------------------------------------ consensus_10998#2 ------------------------------------------------------------ consensus_10998#5 ------------------------------------------------------------ consensus_10998#3 ------------------------------------------------------------ consensus_10998#4 ------------------------------------------------------------ consensus_10998#1 GAAGCAATCTCTTCTAGGTTGGATCTCGTTTCGCACCTGTAATCTGCTTCAAGAAGATAT 134 consensus_10998#0 AAATGAAACCTATTTCTACCAAGCTATAAATAGCCAACCTATTTTCTTAGATAGT-CTGG 599 consensus_10998#6 ------------------------------------------------------------ consensus_10998#2 ---TGAAACCTATT-CTACCAAGCTATAAATAGCCAACCTATTNTCTTAGATAGT-CTGG 55 consensus_10998#5 ------------------------------------------------------------ consensus_10998#3 ------------------------------------------------------------ consensus_10998#4 ------------------------------------------------------------ consensus_10998#1 TTAGCTACTAGTCATAAACGGGTATACAACACGTCATTCTGCCTCATGCTACAACACTGA 194 consensus_10998#0 GATGGCGATGCCTACTAACTGAGTACAAAGAAACACAAAATCTTCCGAAGGAGATTTTTG 659 consensus_10998#6 ------------------------------------------------------------ consensus_10998#2 GATGGCGATGCCTACTAACTGAGTACAAAGAAACACAAAGTCTTCCGAAGGAGATTTTTG 115 consensus_10998#5 ------------------------------------------------------------ consensus_10998#3 ------------------------------------------------------------ consensus_10998#4 ------------------------------------------------------------ consensus_10998#1 TTTAATGCAGCCCATGCACCTCCAAACAGTAGAGGATTTCCATAGCAATTAGCATTCCAA 254 consensus_10998#0 CAACCGTTGCATCAACTAAAAATTATCGGATGAACTCATCCTTACGAAAACCTCTGAGGT 719 consensus_10998#6 ------------------------------------------------------------ consensus_10998#2 CAACCGTTGCATCAACTAAAAATTATCGGATGAACCCATCCTTACGAAAACCTCTGAGGT 175 consensus_10998#5 ------------------------------------------------------------ consensus_10998#3 ------------------------------------------------------------ consensus_10998#4 ------------------------------------------------------------ consensus_10998#1 TCATATATGTTTTTAATGTATTTCATGTGTGTGAGAGAGTTAGGGTTGAGGTTAATCACA 314 consensus_10998#0 ACCTGAGCTATTTACCTGATGGATACGCCTTCAGTCTAGTGGAAATCAAGCTAGAACCAC 779 consensus_10998#6 ------------------------------------------------------------ consensus_10998#2 ACCTGAGCTATTTACCTGATGGATACGCCTTCAGTCTAGTGGAAATCAAGCTAGAACCAC 235 consensus_10998#5 ------------------------------------------------------------ consensus_10998#3 ------------------------------------------------------------ consensus_10998#4 ------------------------------------------------------------ consensus_10998#1 ATGGAACTTATTTACTGAATATAGATATGTATGGTCACATTTTAATCA---CTGCACTTG 371 consensus_10998#0 CGTTGGTATCTGAGTTGACATTATCTCACTTTGCCACATCGTTGAATAACCG-CGCATTG 838 consensus_10998#6 ------------------------------------------------------------ consensus_10998#2 CGTTGGTATCTGAGTTGACATTATCTCACTTTGCCACATCGTTGAATAACCG-CGCATTG 294 consensus_10998#5 --------------------------------------------AACCGACC-TGCATTG 15 consensus_10998#3 --------------------TTTTTTTTTTTTTTTTTTTGTGAGCATATCCA-TTTACTT 39 consensus_10998#4 -----------------------TTTTTTTTTTTTTTTTGTGAGCATATCCA-TTTACTT 36 consensus_10998#1 TGAGTGCTAATGATAACACTCGGCTGCTCAAAATGTAATGGTGGGACAAAAACTGAACTT 431 consensus_10998#0 GAGCGAGAT---CGAAGTCGTCTTGAGGATC--TGAAACTTACTGAGTTAAAAGAGGCAG 893 consensus_10998#6 ------------------------------------------------------------ consensus_10998#2 GAGCGAGAT---CGAAGTCGTCTTGAGGATC--TGAAACTTACTGAGTTAAAAGAGGCAG 349 consensus_10998#5 GAGCGAGAT---CGAAGTCGTCTTGAGGATC--TGAAACTTACTGAGTTAAAAGAGGCAG 70 consensus_10998#3 AAGTAGGAG---TAATAGACATTTCATTTGA--AGAATATGTCAAATTTGGCTTGGCAAG 94 consensus_10998#4 AAGTAGGAG---TAATAGACATTTCATTTGA--AGAATATGTCAAATTTGGCTTGGCAAG 91 consensus_10998#1 CAGTAAAATTTACCAGCTAGGCTTTATGACCGTTTGAGTGAACTGTTTTTCGGTCGGCGC 491 consensus_10998#0 CTGAGAACCAATTCGCGTCACTGCG--ATGTAAGGAATTTTGGTGTAGATTGATGCACAC 951 consensus_10998#6 ---------------CGTCACTGCG--ATGTAAGGAATTTTGGTGTAGATTGATGCACAC 43 consensus_10998#2 CTGAGAACCAATTCGCGTCACTGCGTAAGATAACGGTTAATGGGTTGGTTTTTCTTTTAT 409 consensus_10998#5 CTGAGAACCAATTCGCGTCACTGCT-----------GTGTTGTACTAACGTACCTTCTAC 119 consensus_10998#3 CCATGAAAAAATTCTGTTCCATTTG--------GGAAATATAATATAGTTTGCCAGGCAC 146 consensus_10998#4 CCATGAAAAAATTCTGTTCCATTTG--------GGAAATATAATATAGTTTGCCAGGCAC 143 consensus_10998#1 ATTTTTACCAAAATTTCTACTTTTTATAAAATATACTTTACGTATTTAGGTTTCTCGCTC 551 * * * * consensus_10998#0 TTATGCGTCCAATGTCCTATTAAGTTCCACAGAA-TAACAACCCTTAAATACGTTCATAA 1010 consensus_10998#6 TTATGCGTCCAATGTCCTATTAAGTTCCACAGAA-TAACAACCCTTAAATACGTTCATAA 102 consensus_10998#2 AAGTAGATGCATGCTCTTTACATATTTAAGGGAAGTGGTAATGCAATGATACGTTCGTAT 469 consensus_10998#5 --GTAACTTCAGCTCCAGGTTTTGTTCT-CAGTGGTCATGCAACTTTATCAGATAAACAA 176 consensus_10998#3 -------TCGAGTTTTCTGTCCGACTGACTAGACTAGACTAGTCAATCTTCCTCTTAAAT 199 consensus_10998#4 -------TCGAGTTTTCTGTCCGACTGACTAGACTAGACTAGTCAACCTTCCCCTTAAAA 196 consensus_10998#1 TGGTGCACTCAATGT--TGTTGGTCCAGATCGTGTTGTTCATTTCTCGCGAAGTCCTCCG 609 * * consensus_10998#0 AAATG-----ATACCCCATTGTTTTTCGATAAT-CATATTTTCTACCA--CAATTGCATT 1062 consensus_10998#6 AAATG-----ATACCCCATTGTTTTTCGATAAT-CATATTTTCTACCA--CAATTGCATT 154 consensus_10998#2 CAAAGCTTTCGTTCTTAATATCTAATCGTTAAT-CCAGCTCTCGACCAATCATTTTTCAT 528 consensus_10998#5 GAAGTA----CAACTTGACCCCTCAAATTTCGT-CCCACTCTCAACTG-----------C 220 consensus_10998#3 ATATT------TCTTCAGCTTTTCGAAGTTTCG-CCTAAGGTAGGCCA-----------A 241 consensus_10998#4 AAATT------CCT-CAACCTTTCCAAATTTCC-CCTAAAGGAAGGCA-----------A 237 consensus_10998#1 AAACCGANCAATCCTAAACGCTTCGATATCAATTCCGAATCTTGGCCTACCTTAGGCGAN 669 * * * consensus_10998#0 GCTTCAGTGTGTTGTACTAACGTATCTTCTACGTAACTTCAGCTCCAGGTTTTGTTCTCA 1122 consensus_10998#6 GCTTCAGTGTGTTGTACTAACGTATCTTCTACGTAACTTCAGCTCCAGGTTTTGTTCTCA 214 consensus_10998#2 GACTTACGATATCTACCAAACTTGTTCATATTATAACAACTTTTCTATGGTTTGCTT--- 585 consensus_10998#5 AACTCAAAATACAAAATTGAAGAAAACTTTACCAATCAGTTTTGCTGAAGTTTCTCGCTC 280 consensus_10998#3 GATTCGGAATTGATA-TCGAAGCGTTTAGGATTTGTCGGTTTCGGAGGACTTCGCGA--- 297 consensus_10998#4 GATTCCGGAATGGTAATCAAAGCGTTTAGGATTTGCCGGTTTCGGAGGATTTCGCGA--- 294 consensus_10998#1 ACTTCGAANAGCTGAAGAAATATATTTAAGAGGAAGATTGACTAGTCTAGTCTAGTCAGT 729 * * * consensus_10998#0 GTGGTCATGCAACTTTATC-AGATAAACAAGGTAGGTTATTTATTGTTCTAAAGTTTACA 1181 consensus_10998#6 GTGGTCATGCAACTTTATC-AGATAAACAAGAAGTACAACTTGACCCCTCAAATTTCGTC 273 consensus_10998#2 ----TGATGAAATATGACT-GGATAAACCCATCACA------------------------ 616 consensus_10998#5 TGGTGCACTCAATG---------------------------------------------- 294 consensus_10998#3 -GAAATGAGCAACACGATCTGGACCAACAACATTGAGTGCACCAGAGCGAGAAACTTCAG 356 consensus_10998#4 -AAAATGCGAAACACTATG-GGGCCAA-AAAATT-------------------------- 325 consensus_10998#1 CGGACAGAAAACTCGAGTGCCTGGCAACTATATATATTNCCCAATGGNACAGATTTTTAT 789 * consensus_10998#0 TTTCATAGAAGTACAACTTGACCCCTCAAAT----------------------------- 1212 consensus_10998#6 CCACTCTCAGCTN----------------------------------------------- 286 consensus_10998#2 ------------------------------------------------------------ consensus_10998#5 ------------------------------------------------------------ consensus_10998#3 CAAAACTGATTGGTAAAGTTTTCTTCAATTTTGTATTTTGAGTTGCAGTTGAGAGTGGGA 416 consensus_10998#4 ------------------------------------------------------------ consensus_10998#1 GGCTGCCAGCCAATTGACTATCTCAATGAAGTTATACTCTACTAGTAA------------ 837 consensus_10998#0 ------------------------------------------------------------ consensus_10998#6 ------------------------------------------------------------ consensus_10998#2 ------------------------------------------------------------ consensus_10998#5 ------------------------------------------------------------ consensus_10998#3 CGAAATTTGAGGGGTCAAGTTGTACTTCTTGTTTATCTGATAAAGTTGCATGACCACTGA 476 consensus_10998#4 ------------------------------------------------------------ consensus_10998#1 ------------------------------------------------------------ consensus_10998#0 ------------------------------------------------------------ consensus_10998#6 ------------------------------------------------------------ consensus_10998#2 ------------------------------------------------------------ consensus_10998#5 ------------------------------------------------------------ consensus_10998#3 GAACAAAACCTGGAGGCAGTGACGCGAATTGGTTCTCAGCTGCCTCTTTTACTCAGTAAG 536 consensus_10998#4 ------------------------------------------------------------ consensus_10998#1 ------------------------------------------------------------ consensus_10998#0 ------------------- consensus_10998#6 ------------------- consensus_10998#2 ------------------- consensus_10998#5 ------------------- consensus_10998#3 TTCAGATCCTCAGAACGAC 555 consensus_10998#4 ------------------- consensus_10998#1 ------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||