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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11006#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1439 fasta sequence
[ACGCGCACACTGCTAATCAGCACGTTGGGGTTTGACAGTCCTATATTCATTTGCCAAAAGTAGTTGTTCAGGCGAATCGTAGACCTATACTTCAAACATGCCGAAACCCCCGTTTAAAGTTGCCGACATCAGTTTAGCAGATTGGGGTAGAAAGGAAATCAAGTTAGCAGAGAATGAAATGCCAGGGCTTATTATGATGAGGCAAATGTATGGCAAAGAAAAGCCACTCACTGGAGCTAGAATTGCTGGATGTCTTCATATGACTGTTCAGACTGCAGTTTTAATTGAAACTTTAGTCGAACTGGGAGCATCGGTTCAATGGTCATCCTGCAACATTTTTAGCACACAAGATCATGCTGCTGCAGCCATTGCAAAGACAGGCGTTCCAGTTTACGCGTGGAAAGGTGAAACCGAGGAGGAGTACACTTGGTGTATAGAGCAAACTTTAATATTTCCCGATGGTTTACCTTTAAACATGGTGTTAGACGATGGAGGTGATCTCACAGCTCTTGTTCATGAAAAACATCCTGAATATCTTGAAGGCATAAAAGGCGTTACAGAAGAAACTACAACTGGTGTTCGGAATCTTTATAAGATGTTTTCCAGTGGTCGACTGAAATGTCCTGCCATCAACGTTAATGACTCTGTTACTAAGAGTAAATTCGACAATCTCTATGGTTGCCGTGAATCGTTGGTGGATGGATTAAAAAGAGCCACTGACATCATGCTTGCAGGAAAAGTAGCATTAGTTGCAGGTTATGGAGATGTTGGTAAAGGATGTTCCCAAGCTCTTCGTTCTTATGGTGCGCGTGTACTTATTACGGAAGCCGATCCAATCAATGCTTTACAGGCTGTTATGGAAGGTTACGAAGTAACCACAATGGAAGATGGTGCGAAAAGAGCGAAGATATTTGTTACTGCCACTGGTTGTGTGGATATCATTACTGGTGAGCATTTCTCAGAAATGATGGACGATGCGATTGTCTGTAATATTGGCCACTTTGATACTGAAGTCGATGTTAAGTGGCTCAATGAGAATTGTGTCAGTATAGAATCAATCAAACCTCAAGTTGATCGTTACACATTAAAAAATGGAAGACATATTATTCTACTTGCAGAAGGTCGCCTAGTAAATCTAGGCTGTGCTCATGGCCATCCTAGTTTCGTAATGTCAAACTCTNTCACANATCANGTACTAGCACNAATTGAGCTATGGACANAACCCGATCAGTATCCCAGTTGGCGTCCATTTNCCTCCTAAAAAGCTGATGAAGCTGNTGCTGNCGCTCACTTGNAACAGNNTAGTGTCAAACTACGAATTNACCANNACAGCTGATATCTGGGTGTCCAGTGAGGACATTCAGGGCGACATATNATTTAATTNAGCNNNCTATTGAAATNCTACCATCTATGATCTAATTATGACTGTTTACTCAAAT]
[-] EMBL CD162850 [ACGCGCACACTGCTAATCAGCACGTTGGGGTTTGACAGTCCTATATTCATTTGCCAAAAGTAGTTGTTCAGGCGAATCGTAGACCTATACTTCAAACATGCCGAAACCCCCGTTTAAAGTTGCCGACATCAGTTTAGCAGATTGGGGTAGAAAGGAAATCAAGTTAGCAGAGAATGAAATGCCAGGGCTTATTATGATGAGGCAAATGTATGGCAAAGAAAAGCCACTCACTGGAGCTAGAATTGCTGGATGTCTTCATATGACTGTTCAGACTGCAGTTTTAATTGAAACTTTAGTCGAACTGGGAGCATCGGTTCAATGGTCATCCTGCAACATTTTTAGCACACAAGATCATGCTGCTGCAGCCATTGCAAAGACAGGCGTTCCAGTTTACGCGTGGAAAGGTGAAACCGAGGAGGAGTACACTTGGTGTATAGAGCAAACTTTAATATTTCCCGATGGTTTACCTTTAAACATGGTGTTAGACGATGGAGGTGATCTCACAGCTCTTGTTCATGAAAAACATCCTGAATATCTTGAAGGCATAAAAGGCGTTACAGAAG ]
[+] EMBL BF936780 [ TAATCAGCACGTTGGGGTTTGACAGTCCTATATTCATTTGCCAAAAGTAGTTGTTCAGGCGAATCGTAGACCTATACTTCAAACATGCCGAAACCCCCGTTTAAAGTTGCCGACATCAGTTTAGCAGATTGGGGTAGAAAGGAAATCAAGTTAGCAGAGAATGAAATGCCAGGGCTTATTATGATGAGGCAAATGTATGGCAAAGAAAAGCCACTCACTGGAGCTAGAATTGCTGGATGTCTTCATATGACTGTTCAGACTGCAGTTTTAATTGAAACTTTAGTCGAACTGGGAGCATCGGTTCAATGGTCATCCTGCAACATTTTTAGCACACAAGATCATGCTGCTGCAGCCATTGCAAAGACAGGCGTTCCAGTTTACGCGTGGAAAGGTGAAACCGAGGAGGAGTACACTTGGTGTATAGAGCAAACTTTAATATTTCCCGATGGTTTACCTTTAAACATGGTGTTAGACGATGGAGGTGATCTCACAGCTCTTGTTCATGAAAAACATCCTGAATATCTTGAAGGCATAAAAGGCGTTACAGAAGAAACTACAACTGGTGTTCGGAATCTTTATAAGATGTTTTCCAGTGGTCGACTGAAATGTCCTGCCATCAACGTTAATGACTCTGTTACTAAGAGTAAATTCGACAATCTCTATGGTTGCCGTGAATCGTTGGTGGATGGATTAAAAAGAGCCACTGACATCATGCTTGCAGGAAAAGTAGCATTAGTTGCAAGGTATGGga ]
[+] EMBL AI976197 [ TAATCAGCACGTTGGGGTTTGACAGTCCTATATTCATTTGCCAAAAGTAGTTGTTCAGGCGAATCGTAGACCTATACTTCAAACATGCCGAAACCCCCGTTTAAAGTTGCCGACATCAGTTTAGCAGATTGGGGTAGAAAGGAAATCAAGTTAGCAGAGAATGAAATGCCAGGGCTTATTATGATGAGGCAAATGTATGGCAAAGAAAAGCCACTCACTGGAGCTAGAATTGCTGGATGTCTTCATATGACTGTTCAGACTGCAGTTTTAATTGAAACTTTAGTCGAACTGGGAGCATCGGTTCAATGGTCATCCTGCAACATTTTTAGCACACAAGATCATGCTGCTGCAGCCATTGCAAAGACAGGCGTTCCAGTTTACGCGTGGAAAGGTGAAACCGATGAGGAGTACACTTGGTGTATAGAGCAAACTTTAATATTTCCCGATGGTTTACCTTTAAACATGGTGTTAGACGATGGAGGTGATCTCACAGCTCTTGTTCATGATAAACATCCTGAATATCTTGAAGGCATAA ]
[-] EMBL CD140109 [ TGGGGTTTGACAGTCCTATATTCATTTGCCAAAAGTAGTTGTTCAGGCGAATCGTAGACCTATACTTCAAACATGCCGAAACCCCCGTTTAAAGTTGCCGACATCAGTTTAGCAGATTGGGGTAGAAAGGAAATCAAGTTAGCAGAGAATGAAATGCCAGGGCTTATTATGATGAGACAAATGTATGGCAAAGAAAAGCCACTCACTGGAGCTAGAATTGCTAGATGTCTTCATATGACTGTTCAGACTGCAGTTTTAATTGAAACTTTAGTCGAACTGGGAGCATCGGTTCAATGGTCATCCTGCAACA ]
[-] EMBL CD162940 [ AGACCTATACTTCAAACATGCCGAAACCCCCGTTTAAAGTTGCCGACATCAGTTTAGCAGATTGGGGTAGAAAGGAAATCAAGTTAGCAGAGAATGAAATGCCAGGGCTTATTATGATGAGGCAAATGTATGGCAAAGAAAAGCCACTCACTGGAGCTAGAATTGCTGGATGTCTTCATATGACTGTTCAGACTGCAGTTTTAATTGAAACTTTAGTCGAACTGGGAGCATCGGTTCAATGGTCATCCTGCAACATTTTTAGCACACAAGATCATGCTGCTGCAGCCATTGCAAAGACAGGCGTTCCAGTTTACGCGTGGAAAGGTGAAACCGAGGAGGAGTACACTTGGTGTATAGAGCAAACTTTAATATTTCCCGATGGTTTACCTTTAAACATGGTGTTAGACGATGGAGGTGATCTCACAGCTCTTGTTCATGAAAAACATCCTGAATATCTTGAAGGCATAAAAGGCGTTACAGAAG ]
[-] EMBL CD094713 [ TATTATGATGAGGCAAATGTATGGCAAAGAAAAGCCACTCACTGGAGCTAGAATTGCTGGATGTCTTCATATGACTGTTCAGACTGCAGTTTTAATTGAAACTTTAGTCGAACTGGGAGCATCGGTTCAATGGTCATCCTGCAACATTTTTAGCACACAAGATCATGCTGCTGCAGCCATTGCAAAGACAGGCGTTCCAGTTTACGCGTGGAAAGGTGAAACCGAGGAGGAGTACACTTGGTGTATAGAGCAAACTTTAATATTTCCCGATGGTTTACCTTTAAACATGGTGTTAGACGATGGAGGTGATCTCACAGCTCTTGTTCATGAAAAACGTCCTGAATATCTTGAAGGCATAAAAGGCGTTACAGAAGAAACTACAACTGGTGTTCGGAATCTTTATAAGATGTTTTCCAGTGGCCGACTGAAATGTCCTGCCATCAACGTTAATGACTCTGTTACTAAGAGTAAATTCGACAATCTCTATGGTTGCCGTGAATCGTTGGTGGATGGATTAAAAAGAGCCACTGA ]
[+] EMBL CD079822 [ GGAGGTGATCTCACAGCTCTTGTTCATGAAAAACATCCTGAATATCTTGAAGGCATAAAAGGCGTTACAGAAGAAACTACAACTGGTGTTCGGAATCTTTATAAGATGTTTTCCAGTGGTCGACTGAAATGTCCTGCCATCAACGTTAATGACTCTGTTACTAAGAGTAAATTCGACAATCTCTATGGTTGCCGTGAATCGTTGGTGGATGGATTAAAAAGAGCCACTGACATCATGCTTGCAGGAAAAGTAGCATTAGTTGCAGGTTATGGAGATGTTGGTAAAGGATGTTCCCAAGCTCTTCGTTCTTATGGTGCGCGTGTACTTATTACGGAAGCCGATCCAATCAATGCTTTACAGGCTGTTATGGAAGGTTACGAAGTAACCACAATGGAAGATGGTGCGAAAAGAGCGAAGATATTTGTTACTGCCACTGGTTGTGTGGATATCATTACTGGTGAGCATTTCTCAGAAATGATGGACGATGCGATTGTCTGTAATATTGGCCACTTTGATACTGAAGTCGATGTTAAGTGGCTCAATGAGAATTGTGTCAGTATAGAATCAATCAAACCTCAAGTTGATCGTTACACATTAAAAAATGGAAGACATATTATTCTACTTGCAGAAGGTCGCCTAGTAAATCTAGGCTGTGCTCATGGCCATCCTAGTTTCGTAATGTCAAACTCTNTCACANATCANGTACTAGCACNAATTGAGCTATGGACANAACCCGATCAGTATCCCAGTTGGCGTCCATTTNCCTCCTAAAAAGCTGATGAAGCTGNTGCTGNCGCTCACTTGNAACAGNNTAGTGTCAAACTACGAATTNACCANNACAGCTGATATCTGGGTGTCCAGTGAGGACATTCAGGGCGACATATNATTTAATTNAGCNNNCTATTGAAATNCTACCATCTATGATCTAATTATGACTGTTTACTCAAAT]
[+] EMBL CD083799 [ cgagGGCGTTACAGAAGAAACTACAACTGGTG TCGGAATCTTTAT AGATGTTTTCCAGTGGTCGACTGAAATGTCCTGCCATCAACGTTAATGACTCTGTTACTAAGAGTAAATTCGACAATCTCTATGGTTGCCGTGAATCGTTGGTGGATGGATTAAAAAGAGCCACTGACATCATGCTTGCAGGAAAAGTAGCATTAGTTGCAGGTTATGGAGATGTTGGTAAAGGATGTTCCCAAGCTCTTCGTTCTTATGGTGCGCGTGTACTTATTACGGAAGCCGATCCAATCAATGCTTTACAGGCTGTTATGGAAGGTTACGAAGTAACCACAATGGAAGATGGTGCGAAAAGAGCGAAGATATTTGTTACTGCCACTGGTTGTGTGGATATCATTACTGGTGAGCATTTCTCAGAAATGATGGACGATGCGATTGTCTGTAATATTGGCCACTTTGATACTGAAGTCGATGTTAAGTGGCTCAATGAGAATT ]
[+] EMBL CD165812 [ TTATAAGATGTTTTCCAGTGGTCGACTGAAATGTCCTGCCATCAACGTTAATGACTCTGTTACTAAGAGTAAATTCGACAATCTCTATGGTTGCCGTGAATCGTTGGTGGATGGATTAAAAAGAGCCACTGACATCATGCTTGCAGGAAAAGTAGCATTAGTTGCAGGTTATGGAGATGTTGGTAAAGGATGTTCCCAAGCTCTTCGTTCTTATGGTGCGCGTGTACTTATTACGGAAGCCGATCCAATCAATGCTTTACAGGCTGTTATGGAAGGTTACGAAGTAACCACAATGGAAGATGGTGCGAAAAGAGCGAAGATATTTGTTACTGCCACTGGTTGTGTGGATATCATTACTGGTGAGCATTTCTCAGAAATGATGGACGATGCGATTGTCTGTAATATTGGCCACTTTGATACTGAAG ]
[-] EMBL CD087006 [ AAGATGTTTTCCAGTGGTCGACTGAAATGTCCTGCCATCAACGTTAATGACTCTGTTACTAAGAGTAAATTCGACAATCTCTATGGTTGCCGTGAATCGTTGGTGGATGGATTAAAAAGAGCCACTGACATCATGCTTGCAGGAAAAGTAGCATTAGTTGCAGGTTATGGAGATGTTGGTAAAGGATGTTCCCAAGCTCTTCGTTCTTATGGTGCGCGTGTACTTATTACGGAAGCCGATCCAATCAATGCTTTACGGGCTGTTATGGAAGGTTACGAAGTAACCACAATGGAAGATGGTGCGAAAAGAGCGAAGATAT ]
consensusID : consensus_11006#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 596 fasta sequence
[CGTTCCAGTTTACGCGTGGAAAGGTGAAACCGAGGAGGAGTACACTTGGTGTATAGAGCAAGTATATGACCTATACCATAAATATAATCTAAGACTTTAATATTTCCCGATGGTTTACCTTTAAACATGGTGTTAGTGGGAGGAGGTGATCTCACAGCTCTTGTTCATGAAAAACATCCTGAATATCTTGAAGGCATAAAAGGCGTTACAGAAGAAACTACAACTGGTGTTCGGAATCTTTATAAGATGTTTTCCAGTGGTCGACTGAAATGTCCTGCCATCAACGTTAATGACTCTGTTACTAAGAGTAAATTCGACAATCTCTATGGTTGCCGTGAATCGTTGGTGGATGGATTAAAAAGAGCCACTGACATCATGCTTGCAGGAAAAGTAGCATTAGTTGCAGGTTATGGAGATGTTGGTAAAGGATGTTCCCAAGCTCTTCGTTCTTATGGTGCGCGTGTACTTATTACGGAAGCCGATCCAATCAATGCTTTACAGGCTGTTATGGAAGGTTACGAAGTAACCACAATGGAAGATGGTGATCTCACAGCTCTTGTTCATGAAAAACATCCTGAATATCTTGAAGGCATAAA]
[+] EMBL CD146067 [CGTTCCAGTTTACGCGTGGAAAGGTGAAACCGAGGAGGAGTACACTTGGTGTATAGAGCAAGTATATGACCTATACCATAAATATAATCTAAGACTTTAATATTTCCCGATGGTTTACCTTTAAACATGGTGTTAGACGATGGAGGTGATCTCACAGCTCTTGTTCATGAAAAACATCCTGAATATCTTGAAGGCATAAAAGGCGTTACAGAAGAAACTACAACTGGTGTTCGGAATCTTTATAAGATGTTTTCCAGTGGTCGACTGAAATGTCCTGCCATCAACGTTAATGACTCTGTTACTAAGAGTAAATTCGACAATCTCTATGGTTGCCGTGAATCGTTGGTGGATGG ]
[+] EMBL CD188465 [ TGGGAGGAGGTGATCTCACAGCTCTTGTTCATGAAAAACATCCTGAATATCTTGAAGGCATAAAAGGCGTTACAGAAGAAACTACAACTGGTGTTCGGAATCTTTATAAGATGTTTTCCAGTGGTCGACTGAAATGTCCTGCCATCAACGTTAATGACTCTGTTACTAAGAGTAAATTCGACAATCTCTATGGTTGCCGTGAATCGTTGGTGGATGGATTAAAAAGAGCCACTGAC ]
[+] EMBL CD188453 [ TGGGAGGAGGTGATCTCACAGCTCTTGTTCATGAAAAACATCCTGAATATCTTGAAGGCATAAAAGGCGTTACAGAAGAAACTACAACTGGTGTTCGGAATCTTTATAAGATGTTTTCCAGTGGTCGACTGAAATGTCCTGCCATCAACGTTAATGACTCTGTTACTAAGAGTAAATTCGACAATCTCTATGGTTGCCGTGAATCGTTGGTGGATGGATTAAAAAGAGCCACTGAC ]
[-] EMBL CD113954 [ TTGAAGGCATAAAAGGCGTTACAGAAGAAACTACAACTGGTGTTCGGAATCTTTATAAGATGTTTTCCAGTGGTCGACTGAAATGTCCTGCCATCAACGTTAATGACTCTGTTACTAAGAGTAAATTCGACAATCTCTATGGTTGCCGTGAATCGTTGGTGGATGGATTAAAAAGAGCCACTGACATCATGCTTGCAGGAAAAGTAGCATTAGTTGCAGGTTATGGAGATGTTGGTAAAGGATGTTCCCAAGCTCTTCGTTCTTATGGTGCGCGTGTACTTATTACGGAAGCCGATCCAATCAATGCTTTACAGGCTGTTATGGAAGGTTACGAAGTAACCACAATGGAAGATGGTGATCTCACAGCTCTTGTTCATGAAAAACATCCTGAATATCTTGAAGGCATAAA]
[-] EMBL CD113943 [ TTGAAGGCATAAAAGGCGTTACAGAAGAAACTACAANTGGTGTTCGGAATCTTTATAAGATGTTTTCCAGTGGTNGANTGAAATGTCNNGCCATn ]
consensusID : consensus_11006#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 567 fasta sequence
[TGTTACTGCCACTGGTTGTGTGGATATCATTACTGGTGAGCATTTCTCAGAAATGATGGACGATGCGATTGTCTGTAATATTGGCCACTTTGATACTGAAGTCGATGTTAAGTGGCTCAATGAGAATTGTGTCAGTATAGAATCAATCAAACCTCAAGTTGATCGTTACACATTAAAAAATGGAAGACATATTATTCTACTTGCAGAAGGTCGCCTAGTAAATCTAGGCTGTGCTCATGGCCATCCTAGTTTCGTAATGTCAAACTCTTTCACAAATCAGGTACTAGCACAAATTGAGCTATGGACAAAACCCGATCAGTATCCAGTTGGCGTCCATTTCCTCCCTAAAAAGCTGGATGAGGCTGTTGCTGCCGCTCACTTGGAACAGTTAGGTGTCAAACTAACGAAATTAACCAAAAAACAAGCTGATTATCTGGGTG-TACCAGTTGAAGGACCATTC-AAGG-CGGAACATTATAGATATTAAATTTAAGCTACTTAATTTGTAAAATACTATACCAATCTATATGAATCATAATCTAATGAACTGTTATTACTCAAAAATAAAGA]
[-] EMBL CD076592 [TGTTACTGCCACTGGTTGTGTGGATATCATTACTGGTGAGCATTTCTCAGAAATGATGGACGATGCGATTGTCTGTAATATTGGCCACTTTGATACTGAAGTCGATGTTAAGTGGCTCAATGAGAATTGTGTCAGTATAGAATCAATCAAACCTCAAGTTGATCGTTACACATTAAAAAATGGAAGACATATTATTCTACTTGCAGAAGGTCGCCTAGTAAATCTAGGCTGTGCTCATGGCCATCCTAGTTTCGTAATGTCAAACTCTTTCACAAATCAGGTACTAGCACAAATTGAGCTATGGACAAAACCCGATCAGTATCCAGTTGGCGTCCATTTCCTCCCTAAAAAGCTGGATGAGGCTGTTGCTGCCGCTCACTTGGAACAGTTATGTGTCAAACTAACGAAATTAACCAAAAAACAAGCTGATTATTTGGGTG TACCAGTTGAAGGACCATTC AAGG CGGAACATTATAGATATTAAATTTAAGCTACTTAATTTGTAAAATACTATACCAATCTATATGAATCATAATTTAATGAACTGTTATTACTCAAAAATAAAGA]
[-] EMBL CD165826 [ TGCCACTGGTTGTGTGGATATCATTACTGGTGAGCATTTCTCAGAAATGATGGACGATGCGATTGTCTGTAATATTGGCCACTTTGATACTGAAGTCGATGTTAAGTGGCTCAATGAGAATTGTGTCAGTATGGAATCAATCAAACCTCAAGTTGATCGTTACACATTAAAAAATGGAAGACATATTATTCTACTTGCAGAAGGTCGCCTAGTAAATCTAGGCTGTGCTCATGGCCATCCTAGTTTCGTAATGTCAAACTCTTTCACAAATCAGGTACTAGCACAAATTGAGCTATGGACAAAACCCGATCAGTATCCAGTTGGCGCCCATTTCCTCCCTAAAAAGCTGGATGAGGCTGTTGCTGCCGCTCACTTGGAACAGTTAGGTGTCAAACTAACGAAATTAACCAAAAAACAAGCTGATTATCTGGGTG TACCAGTTGAAGGA ]
[-] EMBL CD074080 [ TCAGAAATGATGGACGATGCGATTGTCTGTAATATTGGCCACTTTGATACTGAAGTCGATGTTAAGTGGCTCAATGAGAATTGTGTCAGTATAGAATCAATCAAACCTCAAGTTGATCGTTACCCATTAAAAAATGGAAGACATATTATTTTACTTGCAGAAGGTCGCCTAGTAAATTTAGGCTGTGGTCATGGCCATCCTAGTTTTGTAATGTCAAACTTTTTCACAAATCAGGTACTAGCACAAATTGAGCTATGGACAAAACCCGATCAGTATCCAGTTGGGGTCCATTTCCTCCCTAAAAAACTGGATGAGGCTGTTGCTGCCGCTCACTTGGAACAGTTAGGTGTCAAACTAACGAAATTAACCAAAAAACAAGCTGATTATTTGGGTG TACCAGTTGAAGGACCATTC AAGG CGGAACATTATAGATATTAAATTTAAGCTACTTAATTTGTAAAATACTATACCAATTTATATGAATCATAATTTAATGAACTGTTATTACTCAAAAATAAAGA]
[-] EMBL CD077003 [ tccCATTAAAAAATGGAAGACATATTATTTTACTTGCAGAAGGTCGCCTAGTAAATTTAGGCTGTGGTCATGGCCATCCTAGTTTCGTAATGTCAAACTCTTTCCCAAATCAGGTACTAGCCCAAATTGAGCTATGGACAAAACCCGATCAGTATCCAGTTGGCGTCCATTTCCTCCCTAAAAAGCTGGATGAGGCTGTTGCTGCCGCTCACTTGGAACAGTTAGGTGTCAAACTAACGAAATTAACCAAAAAACAAGCTGATTATTTGGGTG TACCAGTTGAAGGACCATTC AAGG CGGAACATTATAGATATTAAATTTAAGCTACTTAATTTGTAAAATACTATACCCATCTATATGAATCATAATTTAATGAACTGTTATTACTCAAAAATAAAGA]
[-] EMBL AI067807 [ TTAAAAAATGGAAGACATATTATTCTACTTGCAGAAGGTCGCCTAGTAAATCTAGGCTGTGCTCATGGCCATCCTAGTTTCGTAATGTCAAACTCTTTCACAAATCAGGTACTAGCACAAATTGAGCTATGGACAAAACCCGATCAGTATCCAGTTGGCGTCCATTTCCTCCCTAAAAAGCTGGATGAGGCTGTTGCTGCCGCTCACTTGGAACAGTTAGGTGTCAAACTAACGAAATTAACCAAAAAACAAGCTGATTATCTGGGTG TACCAGTTGAAGGACCATTC AAGG CGGAACATTATAGATATTAAATTTAAGCTACTTAATTTGTAAAATACTATACCAATCTATATGAATCATAATCTAATGAACTGTTATTAC ]
[+] EMBL SMAA25636 [ GGTCGCCTAGTAAATCTAGGCTGTGCTCATGGCCATCCTAGTTTCGTAATGTCAAACTCTTTCACAAATCAGGTACTAGCACAAATTGAGCTATGGAC AAACCCGATCAGTATCCAGTTGGCGTCCATTTCCTCCCTAAAAAGCTGGATGAGGCTGTTGCTGCCGCTCACTTGGAACAGTTAGGTGTC AACTAACGAAATTAACCCAAAAACAGGCTGATTATCTGGGTGCTACCAGTTGAAGGACCATTCAAAGGCCGGAACATTATAGATATTAAATTTAAGCTACTTAATT ]
[-] EMBL AI067612 [ GCCTAGTAAATCTAGGCTGTGCTCATGGCCATCCTAGTTTCGTAATGTCAAACTCTTTCACAAATCAGGTACTAGCACAAATTGAGCTATGGACAAAACCCGATCAGTATCCAGTTGGCGTCCATTTCCTCCCTAAAAAGCTGGATGAGGCTGTTGCTGCCGCTCACTTGGAACAGTTAGGTGTCAAACTAACGAAATTAACCAAAAAACAAGCTGATTATCTGGGTG TACCAGTTGAAGGACCATTC AAGG CGGAACATTATAGATATTAAATTTAAGCTACTTAATTTGTAAAATACTGTACCAATCTGTATGAATCCTAATCTAATGAACTG ]
[-] EMBL AI067855 [ TCTAGGCTGTGCTCATGGCCATCCTAGTTTCGTAATGTCAAACTCTTTCACAAATCAGGTACTAGCACAAATTGAGCTATGGACAAAACCCGATCAGTATCCAGTTGGCGTCCATTTCCTCCCTAAAAAGCTGGATGAGGCTGTTGCTGCCGCTCACTTGGAACAGTTAGGTGTCAAACTAACGAAATTAACCAAAAAACAAGCTGATTATCTGGGTG TACCAGTTGAAGGACCATTC AAGG CGGAACATTATAGATATTAAATTTAAGCTACTTAATTTGTAAAATACTATACCAATCTATATGAATCATAATCTAATGAACTG ]
[-] EMBL AI068081 [ AGGCTGTGCTCATGGCCATCCTAGTTTCGTAATGTCAAACTCTTTCACAAATCAGGTACTAGCACAAATTGAGCTATGGACAAAACCCGATCAGTATCCAGTTGGCGTCCATTTCCTCCCTAAAAAGCTGGATGAGGCTGTTGCTGCCGCTCACTTGGAACAGTTAGGTGTCAAACTAACGAAATTAACCAAAAAACAAGCTGATTATCTGGGTG TACCAGTTGAAGGACCATTC AAGG CGGAACATTATAGATATTAAATTTAAGCTACTTAATTTGTAAAATACTATACCAATCTATATGAATCATAATCTAATGAACTG ]
[+] EMBL CD136421 [ AGGCTGTGCTCATGGCCATCCTAGTTTCGTAATGTCAAACTCTTTCACAAATCAGGTACTAGCACAAGTTGAGCTATGGACAAAACCCGATCAGTATCCAGTTGGCGTCCATTTTCTCCCTAAAAAGCTGGATGAGGCTATTGCTGCC ]
[+] EMBL CD136247 [ AGGCTGTGCTCATGGCCATCCTAGTTTCGTAATGTCAAACTCTTTCACAAATCAGGTACTAGCACAAATTGGGCTATGGACAAAACCCGATCAGTATCCAGTGGGCGTCCATTTCCTCCCTAAAAAGCTGGATG ]
[+] EMBL CD136314 [ AGGCTGTGCTCATGGCCATCCCAGTTTCGTAATGTCAAACTCTTTCACAAATCAGGTACTAGCACAAATTGAGCTATGGACAAAACCCGATCAGTATCCAGTTGGCGTCCATTTCCTCCCTAAAAAGCTGGATG ]
consensusID : consensus_11006#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 352 fasta sequence
[CACGCGCACACTGCTAATCAGCACGTTGGTTCGTTTAGATTTGTATGGTACACCAGAAGTTCACTTTTTTCTTATTACGGACTCATTTCACAAGAAGAAAAATAGCATCTGATGTGTTTTATGTCATGTTATAACGTGTGGTTAGATCTAATGCGACATGCCCTTTGAAATGATTATTGGCGGTACTCTGTAAGATTTCTCCTTACTGGGTTTGACAGTCCTATATTCATTTGCCAAAAGTAGTTGTTCAGGCGAATCGTAGACCTATACTTCAAACATGCCGAAACCCCCGTTTAAAGTTGCCGACATCAGTTTAGCAGATTGGGGTAGAAAGGAAATCAAGTTAGCAGAG]
[-] EMBL CD189576 [CACGCGCACACTGCTAATCAGCACGTTGGTTCGTTTAGATTTGTATGGTACACCAGAAGTTCACTTTTTTCTTATTACGGACTCATTTCACAAGAAGAAAAATAGCATCTGATGTGTTTTATGTCATGTTATAACGTGTGGTTAGATCTAATGCGACATGCCCTTTGAAATGATTATTGGCGGTACTCTGTAAGATTTCTCCTTACTGGGTTTGACAGTCCTATATTCATTTGCCAAAAGTAGTTGTTCAGGCGAATCGTAGACCTATACTTCAAACATGCCGAAACCCCCGTTTAAAGTTGCCGACATCAGTTTAGCAGATTGGGGTAGAAAGGAAATCAAGTTAGCAGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11006#0 ACGCGCACACTGCTAATCAGCACGTTGGGGTTTGACAGTCCTATATTCATTTGCCAAAAG 60
consensus_11006#1 ------------------------------------------------------------
consensus_11006#2 ------------------------------------------------------------
consensus_11006#3 ------------------------------------------------------------
consensus_11006#0 TAGTTGTTCAGGCGAATCGTAGACCTATACTTCAAACATGCCGAAACCCCCGTTTAAAGT 120
consensus_11006#1 ------------------------------------------------------------
consensus_11006#2 ------------------------------------------------------------
consensus_11006#3 ------------------------------------------------------------
consensus_11006#0 TGCCGACATCAGTTTAGCAGATTGGGGTAGAAAGGAAATCAAGTTAGCAGAGAATGAAAT 180
consensus_11006#1 ------------------------------------------------------------
consensus_11006#2 ------------------------------------------------------------
consensus_11006#3 ------------------------------------------------------------
consensus_11006#0 GCCAGGGCTTATTATGATGAGGCAAATGTATGGCAAAGAAAAGCCACTCACTGGAGCTAG 240
consensus_11006#1 ------------------------------------------------------------
consensus_11006#2 ------------------------------------------------------------
consensus_11006#3 ------------------------------------------------------------
consensus_11006#0 AATTGCTGGATGTCTTCATATGACTGTTCAGACTGCAGTTTTAATTGAAACTTTAGTCGA 300
consensus_11006#1 ------------------------------------------------------------
consensus_11006#2 ------------------------------------------------------------
consensus_11006#3 ------------------------------------------------------------
consensus_11006#0 ACTGGGAGCATCGGTTCAATGGTCATCCTGCAACATTTTTAGCACACAAGATCATGCTGC 360
consensus_11006#1 ------------------------------------------------------------
consensus_11006#2 ------------------------------------------------------------
consensus_11006#3 ------------------------------------------------------------
consensus_11006#0 TGCAGCCATTGCAAAGACAGGCGTTCCAGTTTACGCGTGGAAAGGTGAAACCGAGGAGGA 420
consensus_11006#1 ---------------------CGTTCCAGTTTACGCGTGGAAAGGTGAAACCGAGGAGGA 39
consensus_11006#2 ---------------------TGTTACTGCCACTGGTTGTGTGGATATCATTACTGGTGA 39
consensus_11006#3 ------------------------------------------------------------
consensus_11006#0 GTACACTTGGTGTATAGAGCAA--------------------------------ACTTTA 448
consensus_11006#1 GTACACTTGGTGTATAGAGCAAGTATATGACCTATACCATAAATATAATCTAAGACTTTA 99
consensus_11006#2 GCATTTCTCAGAAATGATGGACG-ATGCGAT---TGTCTGTAATATTGGCC---ACTTTG 92
consensus_11006#3 ------------------------------------------------------------
consensus_11006#0 ATATTTC--CCGATGGTTTACCTTTAAACATGGTGTTAGACGATGGAGGTGATCTCACAG 506
consensus_11006#1 ATATTTC--CCGATGGTTTACCTTTAAACATGGTGTTAGTGGGAGGAGGTGATCTCACAG 157
consensus_11006#2 ATACTGAAGTCGATGTTAAGTGGCTCAATGAGAATTGTGTCAGTATAGAATCAATCAAAC 152
consensus_11006#3 -------------------------------------------------------CAC-G 4
**
consensus_11006#0 CTCTTGTTCATGAAAAACATCCTGAATATCTTGAAGGCATAAAAGGCG--TTACAGAAGA 564
consensus_11006#1 CTCTTGTTCATGAAAAACATCCTGAATATCTTGAAGGCATAAAAGGCG--TTACAGAAGA 215
consensus_11006#2 CTCAAGTTGATCGTTA-CACATTAAA-AAATGGAAGACATATTATTCTACTTGCAGAAGG 210
consensus_11006#3 CGCACACTGCTAATCAGCACGTTGGTTCGTTTAGATTTGTATGGTACA-CCAGAAGTTCA 63
* * * * * ** * * * ** * **
consensus_11006#0 AACTACAACTGGTGTTCGGAATCTTTATAAGATGTTTTCCAGTGGTCGAC---TGAAATG 621
consensus_11006#1 AACTACAACTGGTGTTCGGAATCTTTATAAGATGTTTTCCAGTGGTCGAC---TGAAATG 272
consensus_11006#2 TCGCCTAGTAAATCTAGGCTGTGCTCATGGC---CATCCTAGTTTCGTAA---TGTCAAA 264
consensus_11006#3 CTTTTTTCTTATTACGGACTCATTTCACAAGAAGAAAAATAGCATCTGATGTGTTTTATG 123
* * * ** * * *
consensus_11006#0 TCCTGCCATCAAC--GTTAATGACTCTGTT---ACTAAGAGTAAATTCGACAATCTCT-- 674
consensus_11006#1 TCCTGCCATCAAC--GTTAATGACTCTGTT---ACTAAGAGTAAATTCGACAATCTCT-- 325
consensus_11006#2 CTCTTTCACAAATCAGGTACTAGCACAAATTGAGCTATGGACAAAACCCGATCAGTAT-- 322
consensus_11006#3 TCATGTTAT-AACGTGTGGTTAGATCTAAT---GCGACATGCCCTTTGAAATGATTATTG 179
* * ** * * * * * * * *
consensus_11006#0 ATGGT-TGCCGTGAATCGT-TGGTGGATGGATTAAAAAGAGCCACTGACATCATGCTTGC 732
consensus_11006#1 ATGGT-TGCCGTGAATCGT-TGGTGGATGGATTAAAAAGAGCCACTGACATCATGCTTGC 383
consensus_11006#2 CCAGT-TGGCGTCCATTTCCTCCCTAAAAAGCTGGATGAGGCTGTTGCTGCCGCTCACTT 381
consensus_11006#3 GCGGTACTCTGTAAGATTTCTCCTTACTGGGTTTGACAGTCCTAT-------ATTCATTT 232
** ** * * * * *
consensus_11006#0 AGGAAAAGTAGCATTAGTTGCAGGTTATGGAGATGTTGGTAAAGGATGTTCCCAAGCTCT 792
consensus_11006#1 AGGAAAAGTAGCATTAGTTGCAGGTTATGGAGATGTTGGTAAAGGATGTTCCCAAGCTCT 443
consensus_11006#2 GGAACAGTTAG-----GTGTCAAACTAACGAAAT-TAACCAAAAAACAAGCTGATTATCT 435
consensus_11006#3 GCCAAAAGTAGTTGTTCAGGCGAATCGTAGACCTATACTTCAAACATG---CCGAAACCC 289
* * *** * ** * * ** * *
consensus_11006#0 TCGTTCTTATGGTGCGCGTGTACTTATTACGGAAGCCGATCCA-ATCAATGCTTTACAGG 851
consensus_11006#1 TCGTTCTTATGGTGCGCGTGTACTTATTACGGAAGCCGATCCA-ATCAATGCTTTACAGG 502
consensus_11006#2 GGGTGTACCAGTTGAAGGACCATTCAAGGCGGAACATTATAGATATTAAATTTAAGCTAC 495
consensus_11006#3 CCGTTTA-AAGTTGCCGACATCAGTTTAGCAGATTGGGGTAGA-AAGGAAATCAAGTTAG 347
** * ** * ** * * * *
consensus_11006#0 CTGTTATGGAAGGTTACGAAGTAACCACAATGGAAGATGGTGCGAAAAG-AGCGAAGATA 910
consensus_11006#1 CTGTTATGGAAGGTTACGAAGTAACCACAATGGAAGATGGTGATCTCAC-AGCTCTTGTT 561
consensus_11006#2 TTAATTTGTAAAATACTATACCAATCTATATGA---ATCATAATCTAATGAACTGTTATT 552
consensus_11006#3 CAGAG------------------------------------------------------- 352
consensus_11006#0 TTTGTTACTGCCACTGGTTGTGTGGATATCATTACTGGTGAGCATTTCTCAGAAATGATG 970
consensus_11006#1 CATGAAAAACATCCTGAATATCTTGAAGGCATAAA------------------------- 596
consensus_11006#2 ACTCAAAAATAAAGA--------------------------------------------- 567
consensus_11006#3 ------------------------------------------------------------
consensus_11006#0 GACGATGCGATTGTCTGTAATATTGGCCACTTTGATACTGAAGTCGATGTTAAGTGGCTC 1030
consensus_11006#1 ------------------------------------------------------------
consensus_11006#2 ------------------------------------------------------------
consensus_11006#3 ------------------------------------------------------------
consensus_11006#0 AATGAGAATTGTGTCAGTATAGAATCAATCAAACCTCAAGTTGATCGTTACACATTAAAA 1090
consensus_11006#1 ------------------------------------------------------------
consensus_11006#2 ------------------------------------------------------------
consensus_11006#3 ------------------------------------------------------------
consensus_11006#0 AATGGAAGACATATTATTCTACTTGCAGAAGGTCGCCTAGTAAATCTAGGCTGTGCTCAT 1150
consensus_11006#1 ------------------------------------------------------------
consensus_11006#2 ------------------------------------------------------------
consensus_11006#3 ------------------------------------------------------------
consensus_11006#0 GGCCATCCTAGTTTCGTAATGTCAAACTCTNTCACANATCANGTACTAGCACNAATTGAG 1210
consensus_11006#1 ------------------------------------------------------------
consensus_11006#2 ------------------------------------------------------------
consensus_11006#3 ------------------------------------------------------------
consensus_11006#0 CTATGGACANAACCCGATCAGTATCCCAGTTGGCGTCCATTTNCCTCCTAAAAAGCTGAT 1270
consensus_11006#1 ------------------------------------------------------------
consensus_11006#2 ------------------------------------------------------------
consensus_11006#3 ------------------------------------------------------------
consensus_11006#0 GAAGCTGNTGCTGNCGCTCACTTGNAACAGNNTAGTGTCAAACTACGAATTNACCANNAC 1330
consensus_11006#1 ------------------------------------------------------------
consensus_11006#2 ------------------------------------------------------------
consensus_11006#3 ------------------------------------------------------------
consensus_11006#0 AGCTGATATCTGGGTGTCCAGTGAGGACATTCAGGGCGACATATNATTTAATTNAGCNNN 1390
consensus_11006#1 ------------------------------------------------------------
consensus_11006#2 ------------------------------------------------------------
consensus_11006#3 ------------------------------------------------------------
consensus_11006#0 CTATTGAAATNCTACCATCTATGATCTAATTATGACTGTTTACTCAAAT 1439
consensus_11006#1 -------------------------------------------------
consensus_11006#2 -------------------------------------------------
consensus_11006#3 -------------------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||