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Schistosoma mansoni
cluster # 11011 cluster # 11011       Sequences # 28       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11011#0 length = 1230 sequences # 27  
consensus_11011#1 length = 781 sequences # 1  

consensusID : consensus_11011#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 27
consensus length = 1230
fasta sequence
                              [GCAATGCAGTGCATGCATCCACTCCCAAGGATGATGTATTTGCTGAGCCTGAACCAACAAAATCGCAAGACAGTCCAAACGTCGAAGGCCCTGGAACTGTTGAGAACATTCACAATAAAGCCCATGACATATTCCCCGTGCCTTTTGAGGGTGGTAGATTAGTTGTCAATAAAGGACTTTCCCCCAACTTCCAAGTTAACCACTCTCTTTCACTAAATTCCGATGAACAATCTGGTTATCGTTTCGGTGTTACGTATGTCGGGCACAACAAAGTTTCAGACACGGAAAGTTATCCGGTTTTGATGGGTGAACTTCAGCCCAGTGGAAATATGCAGGCTCAAATAATTCACCGAATGTTTCCTTCAGTATATGTTCGCTATATTGCTCAGCTTCAACGTCACCGCTTCGGTGGACAACAAGCTTGTGTAGAGTATCGTAAGCCAAAAGTTCAAACGTCTTTAACTCTTATCAATCCTGATGTTGGTCGTGGTCAGTGTATGGTTGCGCTAGATGTAATGCGTCAAATCACGAAACGATTAGCTCTTGGAAGTGCTTTCTTTTATCAATGCTCTCCCCAGCTGCCTGCAGGGCAAGACGGCGTTTTTAGCTTTGGTGCGAAGTACACATCTTCACATTGGCAAGGTGCTGCAACTATCCGACCATGGCAGAATTCACTTCACGGTAGTTTCCATATTCAAATTGACGACAATCTCCAGTTGGCA-GC-GGAGTTCGAATCTAATTATCA--ACAACAATCAAATA-CTACCACTTTAGGTTACAAATATGATATTCCCAAGGCGAATTTCACCTTCAAAGCACAAATAGACTCCAACGGGAACATAGCTTCCTCT-TTCGAAAAAAAATTAACTCCATTTCCTTTCACATTTTCTCTTTGTGCAATGTGCAACCAAGTAAAGGCCAAATACTCTTTTGGCATTGGACTTAT-GGTTGGTTAGGATTTTATGT-TCTTGTTTTGTGCATATGCCCGGCTTTCCCCCTCTGAATGCACAATCTAGCTACTAGATAATCTTCAATTTTATGTGACCTTGCTGATCGTTTTTGTAAATAGTCGATTATTTATTCTAATCTGTAATCATTAGCTTGTAATACAAGCCTTGATTTTGCAGCGGTGTTCCTGAGTGAGATCATGCTTGTCATAATTCACATTAGTCAGCCAGTCATGTATTATGAATAAAATTAATATCTTTGTAAGTAAAAAAAAAAAAAAAAAAA]

[+] EMBL AI977686             [GCAATGCAGTGCATGCATCCACTCCCAAGGATGATGTATTTGCTGAGCCTGAACCAACAAAATCGCAAGACAGTCCAAACGTCGAAGGCCCTGGAACTGTTGAGAACATTCACAATAAAGCCCATGACATATTCCCCGTGCCTTTTGAGGGTGGTAGATTAGTTGTCAATAAAGGACTTTCCCCCAACTTCCAAGTTAACCACTCTCTTTCACTAAATTCCGATGAACAATCTGGTTATCGTTTCGGTGTTACGTATGTCGGGCACAACAAAGTTTCAGACACGGAAAGTTATCCGGTTTTGATGGGTGAACTTCAGCCCAGTGGAAATATGCAGGCTCAAATAATTCACCGAATGTTTCCTTCAGTATATGTTCGCTATATTGCTCAGCTTCAACGTCACCGCTTCGGTGGACAACAAGCTTGTGTAGAGTATCGTAAGCCAAAAGTTCAAACGTCTTTAACTCTTATCAATCCTGATGTTGGTCGTGGTCAGTGTATGGTTGCGCTAGATGTAATGCGTCAAATCACGAAACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AI976634             [  AATGCAGTGCATGCATCCACTCCCAAGGATGATGTATTTGCTGAGCCTGAACCAACAAAATCGCAAGACAGTCCAAACGTCGAAGGCCCTGGAACTGTTGAGAACATTCACAATAAAGCCCATGACATATTCCCCGTGCCTTTTGAGGGTGGTAGATTAGTTGTCAATAAAGGACTTTCCCCCAACTTCCAAGTTAACCACTCTCTTTCACTAAATTCCGATGAACAATCTGGTTATCGTTTCGGTGTTACGTATGTCGGGCACAACAAAGTTTCAGACACGGAAAGTTATCCGGTTTTGATGGGTGAACTTCAGCCCAGTGGAAATATGCAGGCTCAAATAATTCACCGAATGTTTCCTTCAGTATATGTTCGCTATATTGCTCAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD140502             [                                                                                                        AACATTCACAATAAAGCCCATGACATATTCCCCGTGCCTTTTGAGGGTGGTAGATTAGTTGTCAATAAAGGACTTTCCCCCAACTTCCAAGTTAACCACTCTCTTTCACTAAATTCCGATGAACAATCTGGTTATCGTTTCGGTGTTACGTATGTCGGGCACAACAAAGTTTCAGACACGGAAAGTTATCCGGTTTTGATGGGTGAACTTCAGCCCAGTGGAAATATGCAGGCTCAAATAATTCACCGAATGTTTCCTTCAGTATATGTTCGCTATATTGCTCAGCTTCAACGTCACCGCTTCGGTGGACAACAAGCTTGTGTAGAGTATCGCAAGCCAAAAGTTCAAACGTCTTTAACTCTTATCAATCCTGATGTTGGTCGTGGTCAGTGTATGGTTGCGCTAGATGTAATGCGCCAAATCACGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD202081             [                                                                                                                                                                                              CCAAGTTAACCACTCTCTTTCACTAAATTCCGATGAACAATCTGGTTATCGTTTCGGTGTTACGTATGTCGGGCACAACAAAGTTTCAGACACGGAAAGTTATCCGGTTTTGATGGGTGAACTTCAGCCCAGTGGAAATATGCAGGCTCAAATAATTCACCGAATGTTTCCTTCAGTATATGTTCGCTATATTGCTCAGCTTCAACGTCACCGCTTCGGTGGACAACAAGCTTGTGTAGAGTATCGTAAGCCAAAAGTTCAAACGTCTTTAACTCTTATCAATCCTGATGTTGGTCGTGGTCAGTGTATGGTTGCGCTAGATGTAATGCGTCAAATCACGAAACGATTAGCTCTTGGAAGTGCTTTCTTTTATCAATGCTCTCCCCAGCTGCCTGCAGGGCAAGACGGCGTTTTTAGCTTTGGTGCGAAGTACACATCTTCACATTGGCAAGGTGCTGCAACTATCCGACCATGGCAGAATTCACTTCACGGTAGTTTCCATATTCAAATTGACGAACATCTCCAGTTGGCA GC GGAGTTCGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD202069             [                                                                                                                                                                                              CCAAGTTAACCACTCTCTTTCACTAAATTCCGATGAACAATCTGGTTATCGTTTCGGTGTTACGTATGTCGGGCACAACAGAGTTTCAGACACGGAAAGTTATCCGGTTTTGATGGGTGAACTTCAGCCCAGTGGAAATATGCAGGCTCAAATAATTCACCGAATGTTTCCTTCAGTATATGTTCGCTATATTGCTCAGCTTCAACGTCACCGCTTCGGTGGACAACAAGCTTGTGTAGAGTATCGTAAGCCAAAAGTTCAAACGTCTTTAACTCTTATCAATCCTGATGTTGGTCGTGGTCAGTGTATGGTTGCGCTAGATGTAATGCGTCAAGTCACGAAACGATTAGCTCTTGGAAGTGCTTTCTTTTATCAATGCTCTCCCCAGCTGCCTGCAGGGCAAGACGGCGTTTTTAGCTTTGGTGCGAAGTACACATCTTCACATTGGCAAGGTGCTGCAACTATCCGACCATGGCAGAATTCACTTCACGGTAGTTTCCATATTCAAATTGACGACAATCTCCAGTTGGCA GCGGGAG TCGAATCTAATTATCANNAC AC ATCANAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD201899             [                                                                                                                                                                                                                                                                                GTTTCAGACACGGAAAGTTATCCGGTTTTGATGGGTGAACTTCAGCCCAGTGGAAATATGCAGGCTCAAATAATTCACCGAATGTTTCCATCAGTATATGTTCGCTATATTGCTCAGCTTCAACGTCACCGCTTCGGTGGACAACAAGCTTGTGTAGAGTATCGTAAGCCAAAAGTTCAAACGTCTTTAACTCTTATCAATCCTGATGTTGGTCGTGGTCAGTGTATGGTTGCGCTAGATGTAATGCGTCAAATCACGAAACGATCAGCTCTTGGAAGTGCTTTCTTTTATCAATGCTCTCCCCAGCTGCCTGCAGGGCAAGACGGCGTTTTTAGCTTTGGTGCGAAGTACACATCTTCACATTGGCAAGGTGCTGCAACTATCCGACCATGGCAGAATTCACTTCACGGTAGTTTCCATATTCAAATTGACGACAATCTCCAGTTGGCA GC GGAGTTCGAATCTAATTATCA  ACAACAATCAAATA CTACCACTTTAGGTTACAAATATGATATTCCCAAGGCGAATTTCACCTTCAAAGCACAAATAGACTCCAACGGGAACATAGCTTCCTCT TTCGAAAAANAATTAACTCCATTTCCTTTCACATTTTCTCTTTGTGCAATGTGCAACCCAGTAAA GCCAAATACTCTTTTGGCATTGGACTTATGGGTTGGTAAGGNTTTTATGTNTCTTNGTTTGTGCAT                                                                                                                                                                                                                                                            ]
[-] EMBL CD145215             [                                                                                                                                                                                                                                                                                                                                                                                                                                                           AAAGTTCAAACGTCTTTACTTCTTATCAATCCTGATGTTGGTCGTGGTCAGCGTATGGTTGCGCTAGATGTAATGCGTCAAATCACGAAACGATTAGCTCTTGGAAGTGCTTTCTTTTATCAATGCTCTCCCCAGCTGCCTGCAGGGCAAGACGGCGTTTTTAGCTTTGGTGCGAAGTACACATCTTCACATTGGCAAGGTGCTGCAACTATCCGACCATGGCAGAATTCACTTCACGGTAGTTTCCATATTCAAATTGACGACAATCTCCAGTTGGCA GC GGAGTTCGAATCTAATTATCA  ACAACAATCAAATA CTACCACTTTAGGTTACAAATATGATATTCCCAAGGCGAATTTCACCTTCAAAGCACAAATAGACTCCAACGGGAACATAGCTTCCTCT TTCGAAAAAAAATTAACTCCATTTCCTTTCACATTTTCTCTTTGTGCAATGTGCAACCAAGTAAAGGCCAAATACTCTTTTGGCATTGGACTTAT GGTTGGTTAGGATTTTATGT TCTTGTTTTGTG                                                                                                                                                                                                                                                               ]
[-] EMBL CD196570             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ATCCTGATGTTGGTCGTGGTCAGTGTATGGTTGCGCTAGATGTAATGCGTCAAATCACGAAACGATCAGCTCTTGGAAGTGCTTTCTTTTATCAATGCTCTCCCCAGCTGCCTGCAGGGCAAGACGGCGTTTTTAGCTTTGGTGCGAAGTACACATCTTCACATTGGCAAGGTGCTGCAACTATCCGACCATGGCAGAATTCACTTCACGGTAGTTTCCATATTCAAATTGACGACAATCTCCAGTTGGCA GC GGAGTTCGAATCTAATTATCA  ACAACAATCAAATA CTACCACTTTAGGTTACAAATATGATATTCCCAAGGCGAATTTCACCTTCAAAGCACAAATAGACTCCAACGGGAACATAGCTTCCTCT TTCGAAAAAAAATTAACTCCATTTCCTT                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD145264             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TCAGTGTATGGTTGCGCTAGATGTAATGCGTTAAATCACGAAACGATTAGCTCTTGGAAGTGCTTTCTTTTATCAATGCTCTCCCCAGCTGCCTGCAGGGCAAGACGGCGTTTTTAGCTTTGGTGCGAAGTACACATCTTCACATTGGCAAGGTGCTGCAACTATCCGACCATGGCAGAATTCACTTCACGGTAGTTTCCATATTCAAATTGACGACAATCTCCAGTTGGCA GC GGAGTTCGAATCTAATTATCA  ACAACAATCAAATA CTACCACTTTAGGTTACAAATATGATATTCCCAAGGCGAATTTCACCTTCAAAGCACAAATAGACTCCAACGGGAACATAGCTTCCTCT TTCGAAAAAAAATTAACTCCATTTCCTTTCACATTTTCTCTTTGTGCAATGTGCGACCAAGTAAAGGCCAAATACTCTTTTGGCATTGGACTTAT GATTGGTTAGGATTTTATGT TCTTGTTTTGTG                                                                                                                                                                                                                                                               ]
[-] EMBL CD145186             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AGTGCTTTCTTTTATCAATGCTCTCCCCAGCTGCCTGCAGGGCAAGACGGCGTTTTTAGCTTTGGTGCGAAGTACACATCTTCACATTGGCAAGGTGCTGCAACTATCCGACCATGGCAGAATTCACTTCACGGTAGTTTCCATATTCAAATTGACGACAATCTCCAGTTGGCA GC GGAGTTCGAATCTAATTATCA  ACAACAATCAAATA CTACCACTTTAGGTTACAAATATGATATTCCCAAGGCGAATTTCACCTTCAAAGCAC AATAGACTCCAACGGGAACATAGCTTCCTCT TTCGAAAAAAAATTAACTCCATTTCCTTTCACATTTTCTCTTTGTGCAATGTGCAACCAAGTAAAGGCCAAATACTCTTTTGGCATTGGACTTAT GGTTAGTTAGGATTTTATGT TCTTGTTTTGTG                                                                                                                                                                                                                                                               ]
[-] EMBL CD202113             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TGCTCTCCCCAGCTGCCTGCAGGGCAAGACGGCGTTTTTAGCTTTGGTGCGAAGTACACATCTTCACATTGGCAAGGTGCTGCAAGTATCCGACCATGGCAGAATTCACTTCACGGTAGTTTCCATATTCAAATTGACGACAATCTCCAGATGGCATGC GGAGTTCGAATCTAATTATCA  ACAACAATCGAATA CTGCCACTTTAGGTTACAAATATGATATTCCCAAGGCGAATTTCACCTTCAAAGCACAAATAGACTCCAGCGGGAACATAGATTCCTCT TTCGAAAATAAATTAACTCCATTTCCTTTCACATTTTCTCTTTGTGCAATGTGCAACCAAGTAAAGGCCAAATACTCTTTTGGCAGTGGACTTAT GGTTGGTTAGGATTTTATGT TCTTGTTTTGTG                                                                                                                                                                                                                                                               ]
[+] EMBL CD148379             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CCCCAGCTGCCTGCAGGGCAAGACGGCGTTTTTAGCTTTGGTGCGAAGTACACATCTTCACATTGGCAAGGTGCTGCAACTATCTGACCATGGCAGAATTCACTTCACGGTAGTTTCCATATTCAAATTGACGACAATCTCCAGTTGGCA GC GGAGTTCGAATCTAATTATCA  ACAACAATCAAATA CTACCACTTTAGGTTACAAATATGATATTCCCAAGGCGAATTTCACCTTCAAAGCACAAATAGACTCCAACGGGAACATAGCTTCCTCT TTCGAAAAAAAATTAACTCCA TTCCTTTCACATTTTTTCTTTGTGCAATGGGCAACCAAGTAAAGGCCAAATACTCTTTTGGCATTGGACTTAT GGGTGGTTAAGATTTTATGG TCTTGGTTTGT                                                                                                                                                                                                                                                                ]
[+] EMBL CD148361             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CCCCAGCTGCCTGCAGGGCAAGACGGCGTTTTTAGCTTTGGTGCGAAGTACACATCTTCACATTGGCAAGGTGCTGCAACTATCCGACCATGGCAGAATTCACTTCACGGTAGTTTCCATATTCAAATTGACGACAATCTCCAGTTGGCA GC GGAGTTCGAATCTAATTATCA  ACAACAATCAAATA CTACCACTTTAGGTTACAAATATGATATTCCCAAGGCGAATTTCACCTTCAAAGCACAAATAGACTCCAACGGGAACATAGCTTCCTCT TTCGAAAAAAAATTAACTCCATTTCCTTTCACATTTTCTCTTTGTGCTATGTGCAACCAAGTAAAGGCCAAATACTCTTTTGGCATTGGACTTAT GGTTGGTTAGGATTTTATGC TCTTGTTTTGT                                                                                                                                                                                                                                                                ]
[-] EMBL CD148291             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CCCAGCTGCCTGCAGGGCAAGACGGCGTTTTTAGCTTTGGTGCGAAGTACACATCTTCACATTGGCAAGGTGCTGCAACTATCCGACCATGGCAGAATTCACTTCACGGTAGTTTCCATATTCAAATTGACGACAATCTCCAGTTGGCA GC GGAGTTCGAATCTAATTATCA  ACAACGATCAAATA CTACCACTTTAGGTTACAAATATGATATTCCCAAGGCGAATTTCACCTTCAAAGCACAAATAGACTCCAACGGGAACATAGCTTCCTCT TTCGAAAAAAAATTAACTCCATTTCCTTTCACATTTTCTCTTTGTGCAATGTGCAACCAAGTAAAGGCCAAATACTCTTTTGGCATTGGACTTAT GATTGGTTAGGATTTTATGT TCTTGTTTTGTG                                                                                                                                                                                                                                                               ]
[-] EMBL CD148320             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CCCAGCTGCCTGCAGGGCAAGACGGCGTTTTTAGCTTTGGTGCGAAGTACACATCTTCACATTGGCAAGGTGCTGCAACTATCCGACCATGGCAGAATTCACTTCACGGTAGTTTCCATATTCAAATTGACGACAATCTCCAGTTGGCA GC GGAGTTCGAATCTAATTATCA  ACAACAATCAAATA CTACCACTTTAGGTTACAAATATGATATTCCCAAGGCGAATTTCACCTTCAAAGCACAAATAGACTCCAACGGGAACATAGCTTCCTCT TTCGAAAAAAAATTAACTCCATTTCCTTTCACATTTTCTCTTCGTGCAATGTGCAACCAAGTAAAGGCCAAATACTCTTTTGGCATTGGACTTAT GGTTGGTTAGGATTTTATGT TCTTGTTTTGTG                                                                                                                                                                                                                                                               ]
[-] EMBL CD148376             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CCCAGCTGCCTGCAGGGCAAGACGGCGTTTTTAGCTTTGGTGCGAAGTACACATCTTCACATTGGCAAGGTGCTGCAACTATCCGACCATGGCAGAATTCACTTCACGGTAGTTTCCATGTTCAAATTGACGACAATCTCCAGTTGGCA GC GGAGTTCGAATCTAATTATCA  ACAACAATCAAATA CTACCACTTTAGGTTACAAATATGATATTCCCAAGGCGAATTTCACCTTCAAAGCACAAATAGACTCCAACGGGAACATAGCTTCCTCT TTCGAAAAAAAATTAACTCCATTGCCTTTCACATTTTCTCTTTGTGCAATGTGCAACCAAGTAAAGGCCAAATACTCTTTTGGCATTGGACTTAT GGTTGGTTAGGATTTTATGT TCTTGTTTTGTG                                                                                                                                                                                                                                                               ]
[-] EMBL CD148359             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CCCAGCTGCCTGCAGGGCAAGACGGCGTTTTTAGCTTTGGTGCGAAGTACACATCTTCACATTGGCAAGGTGCTGCAACTATCCGACCATGGCAGAATTCACTTCACGGTAGTTTCCATATTCAAATTGACGACAATCTCCAGTTGGCA GC GGAGTTCGAATCTAATTATCA  ACAACAATCAAATA CTACCACTTTAGGTTACAAATATGATATTCCCAAGGCGAATTTCACCTTCAAAGCACAAATAGACTCCAACGGGAACATAGCTTCCTCT TTCGAAAAAAAATTAACTCCATTTCCTTTCACATTTTCTCTTTGTGCAATGTGCAACCAAGTAAAGGCCAAATACTCNNNNGGCATTGGACTTAT GGTTGGTTAGGATTTTATGT TCTTGTTTTGTG                                                                                                                                                                                                                                                               ]
[-] EMBL CD148324             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CCCAGCTGCCTGCAGGGCAAGACGGCGTTTTTAGCTTTGGTGCGAAGTACACATCTTCACATTGGCAAGGTGCTGCAACTATCCGACCATGGCAGAATTCACTTCACGGTAGTTTCCATATTCAAATTGACGACAATCTCCAGTTGGCA GC GGAGTTCGAATCTAATTATCA  ACAACAATCAAATA CTACCACTTTAGGTTACAAATATGATATTCCCAAGGCGAATTTCACCTTCAAAGCACAAATAGACTCCAACGGGAACATAGCTTCCTCT TTCGAAAAAAAATTAACTCCATTTCCTTTCACATTTTCTCTTTGTGCAATGTGCAACCAAGTAAAGGCCAAATACTCTTTTGGCATTGGACTTAT GGTTGGTTAGGATTTTATGT TCTTGTTTTGTG                                                                                                                                                                                                                                                               ]
[-] EMBL CD148343             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CCCAGCTGCCTGCAGGGCAAGACGGCGTTTTTAGCTTTGGTGCGAAGTACACATCTTCACATTGGCAAGGTGCTGCAACTATCCGACCATGGCAGAATTCACTTCACGGTAGTTTCCATATTCAAATGTACGACAATCTCCAGTTGGCA GC GGAGTTCGAATCTAATTATCA  ACAACAATCAAATA CTACCACTTTAGGTTACAAATATGATATTCCCAAGGCGAATTTCACCTTCAAAGCACAAATAGACTCCAACGGGAACATAGCTTCCTCT TTCGAAAAAAAATTAACTCCATTTCCTTTCACATTTTCTCTTTGTGCAATGTGCAACCAAGTAAAGGCCAAATACTCTTTTGGCATTGGACTTAT GGTTGGTTAGGATTTTATGT TCTTGTTTTGTG                                                                                                                                                                                                                                                               ]
[-] EMBL CD148342             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            caCCAACTGCCTGCAGGGCAATGCGGCGTTTTTAGCTTTGGTGCGAAGTCCACATGTTCACATTGGCAAGGTGTTGCAACTATCCGAGCATGGCAGAATTCCCTTCACGGTAGTTTCCATATTCAAATTGAGGACAATCTCCAGTTGTCATGC GGAGTTCGAATCTAATTATCA  TCATCAATCAAATATCTACCACTTTAGGTTACAAATATGATATTCTCAAGGCGAATTTCACCTTCAAAGCACAAATAGTCTCCAACGGGAACATAGCTTCCTCT TTCGAAAAAAAATTAACTCCATTTCCTTTCACATTTTCTCTTTGTGCAATGTGCAACCAAGTAAAGGCCAAATACTCTTTTGGCATTGGACGTAT GGTTGGTTAGGATTATATGT TCTTGTTTTGTG                                                                                                                                                                                                                                                               ]
[-] EMBL CD120531             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              atTCT ATTATCA  ACAACAATCAAATA CTACCAC GTAGGTTACAAATATGATATTCCCAAGGCGAATTTCTCCTTCAAAGCACAAATAGACTCCAACGGGAACATAGCTTCCTCT TTAGAAAAAAAATTAACGCCATTTCCTTTCACATTTTCTCTTTGTGCAATGTGCAACCAAGTAAAGGCCAAAT CTTTTTTGGCATTGGACTTAT GGTTGGTTAGGATTTTATGT TCTTGTT                                                                                                                                                                                                                                                                    ]
[-] EMBL CD097690             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ATCAAATA CTACCACTTTAGGTTACAAATATGATATTCCCAAGGCGAATTTCACCTTCAAAGCACAAATAGACTCCAACGGGAACATAGCTTCCTCT TTCGAAAAAAAATTAACTCCATTTCCTTTCACATTTTCTCTTTGTGCAATGTGCAACCAAGTAAAGGCCAGATACTCTTTTGGCATTGGACTTAT GGTTGGTTAGGATTTTATGT TCTTGTTTTGTG                                                                                                                                                                                                                                                               ]
[-] EMBL CD201889             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TTACAAATATGATATTCCCAAGGCGAATTTCACCTTCAAAGCACAAATAGGCTCCAACGGGAACATAGCTTCCTCT TTCGAAAAAAAATTAACTCCATTTCCTTTCACATTTTCTCTTTGTGCAATGTGCAACCAAGTAAAGGCCAAATACTCTTTTGGCATTGGACTTAT GGTTGGTTAGGATTTTATGT TCTTGTTTTGTG                                                                                                                                                                                                                                                               ]
[-] EMBL CD132408             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CACCTTCAAAGCACAAATAGACTCCAACGGGAACATAGCATCCTCT TTCGAAAAAAAATTAACTCCATTTCCTTTCACATTTTCTCTTTGTGCAATGTGCAACCAAGTAAAGGCCAAATACTCTTTTGGCATTGGACTTAT GGTTGGTTAGGATTTTATGT TCTTGTTTTG                                                                                                                                                                                                                                                                 ]
[-] EMBL AI395134             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AATTAGACTCCAACGGGAACATAGCTT CTCTGTTCGAAAACAAATTAACTCCATTT CTTTCACATTTTCTCTTTGTGCAATGTGCAACCAAGTAAAGGCCAAATACTCTTTTGGCATTGGACTTAT GGTTGGTTAGGATTTTATGT TCTTGTTTTGTGCATATGCCCGGCTTTCCCCCTCTGAATGCACAATCTAGCTACTAGATAATCTTCAATTTTATGTGACCTTGCTGATCGTTTTTGTAAATAGTCGATTATTTATTCTAATCTGTAATCATTAGCTTGTAATACAAGCCTTGATTTTGCAGCGGTGTTCCTGAGTGAGATCATGCTTGTCATAATTCACATTAGTCAGCCAGTCATGTATTATGAATAAAATTAATATCTTTGTAAGTAAAAAAAAAAAAAAAAAAA]
[+] EMBL CD137964             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AGGATTTTATGT TCTTGTTTTGTGCATATGCCCGGCTTTCCCCCTCTGAATGCACAATCTAGCTACTAGATAATCTTCAATTTTACGTGACCTTGCTGATCGTTTTTGTAAATAGTCGATTATTTATTCTAATCTGTAATCATTAGCTTGTAATACAAGCCTTGATTTTGCAGCGGTGTTCCTGAGTGAGATC                                                                                      ]
[+] EMBL CD138073             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AGGATTTTATGT TCTTGTTTTGTGCATATGCCCGGCTTTCCCCCTCTGAATGCACAATCTAGCTACTAGATAATCTTCAATTTTATGTGACCTTGCTGATCGTTTTTGTAAATAGTCGATTATTTATTCTAATCTGTAATCATTAGCTTGTAATACAAGCCTTGATTTTGCAGCGGTGTTCCTGAGTGAGATC                                                                                      ]


>consensus_11011#0 GCAATGCAGTGCATGCATCCACTCCCAAGGATGATGTATTTGCTGAGCCTGAACCAACAA AATCGCAAGACAGTCCAAACGTCGAAGGCCCTGGAACTGTTGAGAACATTCACAATAAAG CCCATGACATATTCCCCGTGCCTTTTGAGGGTGGTAGATTAGTTGTCAATAAAGGACTTT CCCCCAACTTCCAAGTTAACCACTCTCTTTCACTAAATTCCGATGAACAATCTGGTTATC GTTTCGGTGTTACGTATGTCGGGCACAACAAAGTTTCAGACACGGAAAGTTATCCGGTTT TGATGGGTGAACTTCAGCCCAGTGGAAATATGCAGGCTCAAATAATTCACCGAATGTTTC CTTCAGTATATGTTCGCTATATTGCTCAGCTTCAACGTCACCGCTTCGGTGGACAACAAG CTTGTGTAGAGTATCGTAAGCCAAAAGTTCAAACGTCTTTAACTCTTATCAATCCTGATG TTGGTCGTGGTCAGTGTATGGTTGCGCTAGATGTAATGCGTCAAATCACGAAACGATTAG CTCTTGGAAGTGCTTTCTTTTATCAATGCTCTCCCCAGCTGCCTGCAGGGCAAGACGGCG TTTTTAGCTTTGGTGCGAAGTACACATCTTCACATTGGCAAGGTGCTGCAACTATCCGAC CATGGCAGAATTCACTTCACGGTAGTTTCCATATTCAAATTGACGACAATCTCCAGTTGG CAGCGGAGTTCGAATCTAATTATCAACAACAATCAAATACTACCACTTTAGGTTACAAAT ATGATATTCCCAAGGCGAATTTCACCTTCAAAGCACAAATAGACTCCAACGGGAACATAG CTTCCTCTTTCGAAAAAAAATTAACTCCATTTCCTTTCACATTTTCTCTTTGTGCAATGT GCAACCAAGTAAAGGCCAAATACTCTTTTGGCATTGGACTTATGGTTGGTTAGGATTTTA TGTTCTTGTTTTGTGCATATGCCCGGCTTTCCCCCTCTGAATGCACAATCTAGCTACTAG ATAATCTTCAATTTTATGTGACCTTGCTGATCGTTTTTGTAAATAGTCGATTATTTATTC TAATCTGTAATCATTAGCTTGTAATACAAGCCTTGATTTTGCAGCGGTGTTCCTGAGTGA GATCATGCTTGTCATAATTCACATTAGTCAGCCAGTCATGTATTATGAATAAAATTAATA TCTTTGTAAGTAAAAAAAAAAAAAAAAAAA



consensusID : consensus_11011#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 781
fasta sequence
                              [CAACTAATCTACCACTCTCTTTCACTAAATTCCGATGAACAATCTGGTTATCGTTTCGGTGTTACGTATGTCGGGCACAACAAAGTTTCAGACACGGAAAGTTATCCGGTTTTGATGGGTGAACTTCAGCCCAGTGGAAATATGCAGGCTCAAATAATTCACCGAATGTTTCCTTCAGTATATGTTCGCTATATTGCTCAGCTTCAACGTCACCGCTTCGGTGGACAACAAGCTTGTGTAGAGTATCGTAAGCCAAAAGTTCAAACGTCTTTAACTCTTATCAATCCTGATGTTGGTCGTGGTCAGTGTATGGTTGCGCTAGATGTAATGCGTCAAATCACGAAACGATTAGCTCTTGGAAGTGCTTTCTTTTATCAATGCTCTCCCCAGCTGCCTGCAGGGCAAGACGGCGTTTTTAGCTTTGGTGCGAAGTACACATCTTCACATTGGCAAGGTGCTGCAACTATCCGACCATGGCAGAATTCACTTCACGGTAGTTTCCATATTCNAATTGACGACAATCTCCAGTTGGCAGCGGAGTTCGAATCTAATTATCAACCACAATCAAATACTACCACTTTTAGGTACAAATATGATATTCCCTAAGCGAATTTCACCTTCAAAGCAAAATAGACTTCAACGGGGACATAGCTCCCTCTTTCGAAAAAAATTAACTCCTTTCCTTTCAAATTTTCTCTTTGTGCATGTGCCACCAAGTAAAAGGCAAATTACTTTTTTGGCATTGAAACTAAGGTGGGATAGGAATTATGGTCTTGTTTGG]

[+] EMBL CD202129             [CAACTAATCTACCACTCTCTTTCACTAAATTCCGATGAACAATCTGGTTATCGTTTCGGTGTTACGTATGTCGGGCACAACAAAGTTTCAGACACGGAAAGTTATCCGGTTTTGATGGGTGAACTTCAGCCCAGTGGAAATATGCAGGCTCAAATAATTCACCGAATGTTTCCTTCAGTATATGTTCGCTATATTGCTCAGCTTCAACGTCACCGCTTCGGTGGACAACAAGCTTGTGTAGAGTATCGTAAGCCAAAAGTTCAAACGTCTTTAACTCTTATCAATCCTGATGTTGGTCGTGGTCAGTGTATGGTTGCGCTAGATGTAATGCGTCAAATCACGAAACGATTAGCTCTTGGAAGTGCTTTCTTTTATCAATGCTCTCCCCAGCTGCCTGCAGGGCAAGACGGCGTTTTTAGCTTTGGTGCGAAGTACACATCTTCACATTGGCAAGGTGCTGCAACTATCCGACCATGGCAGAATTCACTTCACGGTAGTTTCCATATTCNAATTGACGACAATCTCCAGTTGGCAGCGGAGTTCGAATCTAATTATCAACCACAATCAAATACTACCACTTTTAGGTACAAATATGATATTCCCTAAGCGAATTTCACCTTCAAAGCAAAATAGACTTCAACGGGGACATAGCTCCCTCTTTCGAAAAAAATTAACTCCTTTCCTTTCAAATTTTCTCTTTGTGCATGTGCCACCAAGTAAAAGGCAAATTACTTTTTTGGCATTGAAACTAAGGTGGGATAGGAATTATGGTCTTGTTTGG]


>consensus_11011#1 CAACTAATCTACCACTCTCTTTCACTAAATTCCGATGAACAATCTGGTTATCGTTTCGGT GTTACGTATGTCGGGCACAACAAAGTTTCAGACACGGAAAGTTATCCGGTTTTGATGGGT GAACTTCAGCCCAGTGGAAATATGCAGGCTCAAATAATTCACCGAATGTTTCCTTCAGTA TATGTTCGCTATATTGCTCAGCTTCAACGTCACCGCTTCGGTGGACAACAAGCTTGTGTA GAGTATCGTAAGCCAAAAGTTCAAACGTCTTTAACTCTTATCAATCCTGATGTTGGTCGT GGTCAGTGTATGGTTGCGCTAGATGTAATGCGTCAAATCACGAAACGATTAGCTCTTGGA AGTGCTTTCTTTTATCAATGCTCTCCCCAGCTGCCTGCAGGGCAAGACGGCGTTTTTAGC TTTGGTGCGAAGTACACATCTTCACATTGGCAAGGTGCTGCAACTATCCGACCATGGCAG AATTCACTTCACGGTAGTTTCCATATTCNAATTGACGACAATCTCCAGTTGGCAGCGGAG TTCGAATCTAATTATCAACCACAATCAAATACTACCACTTTTAGGTACAAATATGATATT CCCTAAGCGAATTTCACCTTCAAAGCAAAATAGACTTCAACGGGGACATAGCTCCCTCTT TCGAAAAAAATTAACTCCTTTCCTTTCAAATTTTCTCTTTGTGCATGTGCCACCAAGTAA AAGGCAAATTACTTTTTTGGCATTGAAACTAAGGTGGGATAGGAATTATGGTCTTGTTTG G



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11011#0      GCAATGCAGTGCATGCATCCACTCCCAAGGATGATGTATTTGCTGAGCCTGAACCAACAA 60
consensus_11011#1      ------------------------------------------------------------
                                                                                   

consensus_11011#0      AATCGCAAGACAGTCCAAACGTCGAAGGCCCTGGAACTGTTGAGAACATTCACAATAAAG 120
consensus_11011#1      ------------------------------------------------------------
                                                                                   

consensus_11011#0      CCCATGACATATTCCCCGTGCCTTTTGAGGGTGGTAGATTAGTTGTCAATAAAGGACTTT 180
consensus_11011#1      ------------------------------------------------------------
                                                                                   

consensus_11011#0      CCCCCAACTTCCAAGTTAACCACTCTCTTTCACTAAATTCCGATGAACAATCTGGTTATC 240
consensus_11011#1      ----CAACT----AATCTACCACTCTCTTTCACTAAATTCCGATGAACAATCTGGTTATC 52
                           *****    * *  ******************************************

consensus_11011#0      GTTTCGGTGTTACGTATGTCGGGCACAACAAAGTTTCAGACACGGAAAGTTATCCGGTTT 300
consensus_11011#1      GTTTCGGTGTTACGTATGTCGGGCACAACAAAGTTTCAGACACGGAAAGTTATCCGGTTT 112
                       ************************************************************

consensus_11011#0      TGATGGGTGAACTTCAGCCCAGTGGAAATATGCAGGCTCAAATAATTCACCGAATGTTTC 360
consensus_11011#1      TGATGGGTGAACTTCAGCCCAGTGGAAATATGCAGGCTCAAATAATTCACCGAATGTTTC 172
                       ************************************************************

consensus_11011#0      CTTCAGTATATGTTCGCTATATTGCTCAGCTTCAACGTCACCGCTTCGGTGGACAACAAG 420
consensus_11011#1      CTTCAGTATATGTTCGCTATATTGCTCAGCTTCAACGTCACCGCTTCGGTGGACAACAAG 232
                       ************************************************************

consensus_11011#0      CTTGTGTAGAGTATCGTAAGCCAAAAGTTCAAACGTCTTTAACTCTTATCAATCCTGATG 480
consensus_11011#1      CTTGTGTAGAGTATCGTAAGCCAAAAGTTCAAACGTCTTTAACTCTTATCAATCCTGATG 292
                       ************************************************************

consensus_11011#0      TTGGTCGTGGTCAGTGTATGGTTGCGCTAGATGTAATGCGTCAAATCACGAAACGATTAG 540
consensus_11011#1      TTGGTCGTGGTCAGTGTATGGTTGCGCTAGATGTAATGCGTCAAATCACGAAACGATTAG 352
                       ************************************************************

consensus_11011#0      CTCTTGGAAGTGCTTTCTTTTATCAATGCTCTCCCCAGCTGCCTGCAGGGCAAGACGGCG 600
consensus_11011#1      CTCTTGGAAGTGCTTTCTTTTATCAATGCTCTCCCCAGCTGCCTGCAGGGCAAGACGGCG 412
                       ************************************************************

consensus_11011#0      TTTTTAGCTTTGGTGCGAAGTACACATCTTCACATTGGCAAGGTGCTGCAACTATCCGAC 660
consensus_11011#1      TTTTTAGCTTTGGTGCGAAGTACACATCTTCACATTGGCAAGGTGCTGCAACTATCCGAC 472
                       ************************************************************

consensus_11011#0      CATGGCAGAATTCACTTCACGGTAGTTTCCATATTCAAATTGACGACAATCTCCAGTTGG 720
consensus_11011#1      CATGGCAGAATTCACTTCACGGTAGTTTCCATATTCNAATTGACGACAATCTCCAGTTGG 532
                       ************************************ ***********************

consensus_11011#0      CAGCGGAGTTCGAATCTAATTATCAACAACAATCAAATACTACCACTTTAGGTTACAAAT 780
consensus_11011#1      CAGCGGAGTTCGAATCTAATTATCAACCACAATCAAATACTACCACTTTTAGGTACAAAT 592
                       *************************** *********************  * *******

consensus_11011#0      ATGATATTCCCAAGGCGAATTTCACCTTCAAAGCACAAATAGACTCCAACGGGAACATAG 840
consensus_11011#1      ATGATATTCCCTAAGCGAATTTCACCTTCAAAGCA-AAATAGACTTCAACGGGGACATAG 651
                       *********** * ********************* ********* ******* ******

consensus_11011#0      CTTCCTCTTTCGAAAAAAAATTAACTCCATTTCCTTTCACATTTTCTCTTTGTGCAATGT 900
consensus_11011#1      CTCCCTCTTTCGAAAAAAA-TTAACTCC-TTTCCTTTCAAATTTTCTCTTTGTGCA-TGT 708
                       ** **************** ******** ********** **************** ***

consensus_11011#0      GCAACCAAGTAAAGGCCAAAT-ACTCTTTTGGCATTGGACTTATGGTTGGTTAGGATTTT 959
consensus_11011#1      GCCACCAAGTAAAAGGCAAATTACTTTTTTGGCATTGAAACTAAGGTGGGATAGGAATT- 767
                       ** ********** * ***** *** *********** *  ** *** ** ***** ** 

consensus_11011#0      ATGTTCTTGTTTTGTGCATATGCCCGGCTTTCCCCCTCTGAATGCACAATCTAGCTACTA 1019
consensus_11011#1      ATGGTCTTGTTTGG---------------------------------------------- 781
                       *** ******** *                                              

consensus_11011#0      GATAATCTTCAATTTTATGTGACCTTGCTGATCGTTTTTGTAAATAGTCGATTATTTATT 1079
consensus_11011#1      ------------------------------------------------------------
                                                                                   

consensus_11011#0      CTAATCTGTAATCATTAGCTTGTAATACAAGCCTTGATTTTGCAGCGGTGTTCCTGAGTG 1139
consensus_11011#1      ------------------------------------------------------------
                                                                                   

consensus_11011#0      AGATCATGCTTGTCATAATTCACATTAGTCAGCCAGTCATGTATTATGAATAAAATTAAT 1199
consensus_11011#1      ------------------------------------------------------------
                                                                                   

consensus_11011#0      ATCTTTGTAAGTAAAAAAAAAAAAAAAAAAA 1230
consensus_11011#1      -------------------------------
                                                      




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)